246 homologs were found in PanDaTox collection
for query gene Shewana3_3793 on replicon NC_008577
Organism: Shewanella sp. ANA-3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008577  Shewana3_3793  restriction modification system DNA specificity subunit  100 
 
 
425 aa  874    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0382  type I restriction-modification system, S subunit  38.23 
 
 
439 aa  218  1e-55  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007484  Noc_2904  restriction modification system DNA specificity subunit  34.78 
 
 
425 aa  210  3e-53  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2391  restriction modification system DNA specificity subunit  38.22 
 
 
374 aa  190  2.9999999999999997e-47  Marinobacter aquaeolei VT8  Bacteria  normal  0.164769  n/a   
 
 
-
 
NC_009654  Mmwyl1_3199  restriction modification system DNA specificity subunit  30.58 
 
 
400 aa  177  3e-43  Marinomonas sp. MWYL1  Bacteria  normal  0.365834  normal 
 
 
-
 
NC_007575  Suden_0944  restriction modification system DNA specificity subunit  30.28 
 
 
420 aa  166  8e-40  Sulfurimonas denitrificans DSM 1251  Bacteria  hitchhiker  0.00000962716  n/a   
 
 
-
 
NC_013161  Cyan8802_0727  restriction modification system DNA specificity domain protein  36.03 
 
 
400 aa  157  4e-37  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0968972 
 
 
-
 
NC_007355  Mbar_A3272  type I restriction-modification system specificity subunit  31.38 
 
 
492 aa  140  3.9999999999999997e-32  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.425878  normal  0.243207 
 
 
-
 
NC_008346  Swol_2257  restriction endonuclease S subunits-like protein  29.11 
 
 
413 aa  134  3.9999999999999996e-30  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2792  restriction modification system DNA specificity domain protein  29.65 
 
 
423 aa  129  1.0000000000000001e-28  Haliangium ochraceum DSM 14365  Bacteria  normal  0.313089  normal 
 
 
-
 
NC_010003  Pmob_1071  restriction modification system DNA specificity subunit  35.19 
 
 
429 aa  127  4.0000000000000003e-28  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  31.72 
 
 
429 aa  125  1e-27  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05614  type I restriction-modification system S subunit  26.3 
 
 
432 aa  123  6e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010085  Nmar_0605  restriction modification system DNA specificity subunit  28.11 
 
 
453 aa  121  1.9999999999999998e-26  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_009483  Gura_4042  restriction modification system DNA specificity subunit  25.12 
 
 
428 aa  120  3e-26  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2598  type I restriction-modification enzyme, S subunit  29.3 
 
 
417 aa  120  3.9999999999999996e-26  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0133376  n/a   
 
 
-
 
NC_013158  Huta_0102  restriction modification system DNA specificity domain protein  31.93 
 
 
442 aa  120  3.9999999999999996e-26  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_013889  TK90_1635  restriction modification system DNA specificity domain protein  27.2 
 
 
419 aa  120  7e-26  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0235263  normal 
 
 
-
 
NC_008340  Mlg_0500  restriction modification system DNA specificity subunit  31.09 
 
 
413 aa  115  1.0000000000000001e-24  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.565018  normal 
 
 
-
 
NC_011899  Hore_04450  restriction modification system DNA specificity domain protein  26.27 
 
 
422 aa  115  1.0000000000000001e-24  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0387  restriction modification system DNA specificity domain  27.52 
 
 
435 aa  115  2.0000000000000002e-24  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0681662  n/a   
 
 
-
 
NC_009439  Pmen_0564  restriction modification system DNA specificity subunit  31.27 
 
 
415 aa  115  2.0000000000000002e-24  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00017151  decreased coverage  6.20122e-17 
 
 
-
 
NC_011884  Cyan7425_1201  restriction modification system DNA specificity domain protein  36.68 
 
 
572 aa  112  1.0000000000000001e-23  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0006  type I restriction-modification system, S subunit, EcoA family  28.69 
 
 
435 aa  111  2.0000000000000002e-23  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2237  restriction modification system DNA specificity subunit  25.27 
 
 
412 aa  109  9.000000000000001e-23  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1805  restriction modification system DNA specificity domain protein  26.97 
 
 
423 aa  108  2e-22  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.745604  normal  0.535567 
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  26.3 
 
 
438 aa  107  3e-22  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_013501  Rmar_1091  restriction modification system DNA specificity domain protein  27.4 
 
 
444 aa  106  7e-22  Rhodothermus marinus DSM 4252  Bacteria  normal  0.17387  n/a   
 
 
-
 
NC_009135  MmarC5_0615  restriction modification system DNA specificity subunit  26.71 
 
 
417 aa  106  8e-22  Methanococcus maripaludis C5  Archaea  normal  0.0545068  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  31.05 
 
 
425 aa  106  1e-21  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_013161  Cyan8802_3989  restriction modification system DNA specificity domain protein  29.13 
 
 
456 aa  105  2e-21  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0737122 
 
 
-
 
NC_007969  Pcryo_2364  restriction modification system DNA specificity subunit  27.65 
 
 
413 aa  104  3e-21  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.188022 
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  30 
 
 
424 aa  103  4e-21  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_009656  PSPA7_0076  type I restriction-modification system subunit S  23.93 
 
 
464 aa  103  8e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0347  type I restriction-modification system, S subunit  28.01 
 
 
390 aa  102  1e-20  Campylobacter lari RM2100  Bacteria  hitchhiker  0.00000269296  n/a   
 
 
-
 
NC_007413  Ava_1158  restriction modification system DNA specificity subunit  24.02 
 
 
454 aa  101  2e-20  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000117149  normal 
 
 
-
 
NC_007204  Psyc_0878  type I restriction modification system methylase  32.8 
 
 
424 aa  100  5e-20  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.707045 
 
 
-
 
NC_007947  Mfla_2606  restriction modification system DNA specificity subunit  31.84 
 
 
429 aa  99.8  7e-20  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  27.42 
 
 
420 aa  99.8  8e-20  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1015  hypothetical protein  26.11 
 
 
477 aa  99  2e-19  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_010003  Pmob_1897  restriction modification system DNA specificity subunit  24.09 
 
 
433 aa  99  2e-19  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_3940  restriction modification system DNA specificity domain protein  24.55 
 
 
453 aa  97.4  4e-19  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_002977  MCA1890  type I restriction-modification system, S subunit  25.13 
 
 
416 aa  97.4  5e-19  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  23.11 
 
 
457 aa  95.9  1e-18  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  25.07 
 
 
456 aa  95.1  2e-18  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_009943  Dole_2926  restriction modification system DNA specificity subunit  26.88 
 
 
434 aa  95.5  2e-18  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2976  restriction modification system DNA specificity domain protein  32.77 
 
 
238 aa  95.5  2e-18  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  25.85 
 
 
426 aa  95.1  2e-18  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_009483  Gura_1481  restriction endonuclease S subunits-like protein  28.57 
 
 
443 aa  94.4  4e-18  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1671  restriction modification system DNA specificity subunit  23.27 
 
 
442 aa  94  5e-18  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.517259  hitchhiker  0.00037426 
 
 
-
 
NC_010717  PXO_02063  type I restriction-modification system, S subunit  24.86 
 
 
501 aa  92.4  1e-17  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0686  type I restriction-modification system, S subunit, putative  31.46 
 
 
561 aa  90.9  4e-17  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.840975  n/a   
 
 
-
 
NC_007760  Adeh_2328  type I restriction-modification system specificity subunit  22.57 
 
 
404 aa  90.9  4e-17  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0988  type I restriction-modification system, S subunit  24.71 
 
 
401 aa  90.9  4e-17  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.271922  n/a   
 
 
-
 
NC_011206  Lferr_0835  restriction modification system DNA specificity domain  31.46 
 
 
563 aa  90.5  5e-17  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.835919  normal  0.945638 
 
 
-
 
NC_012794  GWCH70_3443  restriction modification system DNA specificity domain protein  28.57 
 
 
445 aa  90.1  6e-17  Geobacillus sp. WCH70  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_5008  Restriction endonuclease S subunits-like protein  22.77 
 
 
465 aa  89.7  8e-17  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.441656 
 
 
-
 
NC_010831  Cphamn1_0334  restriction modification system DNA specificity domain  23.64 
 
 
430 aa  89.7  9e-17  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.284396 
 
 
-
 
NC_007777  Francci3_4012  restriction modification system DNA specificity subunit  26.45 
 
 
436 aa  89.4  1e-16  Frankia sp. CcI3  Bacteria  normal  0.848484  normal  0.567977 
 
 
-
 
NC_011773  BCAH820_0845  restriction modification system DNA specificity domain protein  22.62 
 
 
495 aa  89.4  1e-16  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.31571e-19 
 
 
-
 
NC_010506  Swoo_0501  restriction modification system DNA specificity subunit  31.68 
 
 
612 aa  88.6  2e-16  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.435558 
 
 
-
 
NC_008786  Veis_3549  restriction modification system DNA specificity subunit  26.91 
 
 
296 aa  87.4  4e-16  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.348533  normal 
 
 
-
 
NC_011060  Ppha_0745  restriction modification system DNA specificity domain  27.02 
 
 
411 aa  84.7  0.000000000000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.189202  n/a   
 
 
-
 
NC_011761  AFE_2378  type I restriction-modification system, S subunit  26.13 
 
 
383 aa  85.1  0.000000000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2009  restriction modification system DNA specificity domain  26.13 
 
 
423 aa  85.1  0.000000000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.999718  normal  0.91224 
 
 
-
 
NC_012912  Dd1591_4252  restriction modification system DNA specificity domain protein  24.72 
 
 
462 aa  84.7  0.000000000000003  Dickeya zeae Ech1591  Bacteria  normal  0.132013  n/a   
 
 
-
 
NC_007406  Nwi_0268  restriction endonuclease S subunits  27.78 
 
 
444 aa  84  0.000000000000004  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.277222  normal 
 
 
-
 
NC_009438  Sputcn32_0160  restriction modification system DNA specificity subunit  26.79 
 
 
399 aa  84  0.000000000000005  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1253  Type I restriction enzyme EcoAI specificity protein  33.33 
 
 
597 aa  83.6  0.000000000000007  Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  0.00376854  normal 
 
 
-
 
NC_009939  Dgeo_3109  restriction modification system DNA specificity subunit  24.42 
 
 
426 aa  83.2  0.000000000000008  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_007355  Mbar_A2665  type I restriction-modification system specificity subunit  22.07 
 
 
446 aa  83.2  0.000000000000008  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0650221  normal  0.332066 
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  28.33 
 
 
413 aa  83.2  0.000000000000008  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_009523  RoseRS_2689  restriction modification system DNA specificity subunit  26.22 
 
 
290 aa  83.2  0.000000000000008  Roseiflexus sp. RS-1  Bacteria  normal  0.841682  normal 
 
 
-
 
NC_013161  Cyan8802_2277  restriction modification system DNA specificity domain protein  23.81 
 
 
433 aa  82.8  0.00000000000001  Cyanothece sp. PCC 8802  Bacteria  normal  0.200455  hitchhiker  0.00000677276 
 
 
-
 
NC_012917  PC1_2875  restriction modification system DNA specificity domain protein  25.9 
 
 
390 aa  82.4  0.00000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  32.53 
 
 
409 aa  82  0.00000000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_009715  CCV52592_1061  putative type I restriction-modification system, S subunit  28.66 
 
 
528 aa  80.5  0.00000000000005  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2346  restriction modification system DNA specificity subunit  26.63 
 
 
392 aa  80.1  0.00000000000007  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.104931  normal  0.0105772 
 
 
-
 
NC_007969  Pcryo_0951  restriction modification system DNA specificity subunit  24.13 
 
 
419 aa  79.7  0.00000000000009  Psychrobacter cryohalolentis K5  Bacteria  normal  unclonable  0.0000406123 
 
 
-
 
NC_008740  Maqu_0233  restriction modification system DNA specificity subunit  23.61 
 
 
461 aa  79.3  0.0000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.0967889  n/a   
 
 
-
 
NC_009077  Mjls_2226  restriction modification system DNA specificity subunit  25.78 
 
 
451 aa  78.2  0.0000000000002  Mycobacterium sp. JLS  Bacteria  normal  0.890862  normal 
 
 
-
 
NC_002967  TDE2744  type I restriction-modification system, S subunit  23.61 
 
 
532 aa  78.2  0.0000000000003  Treponema denticola ATCC 35405  Bacteria  normal  0.0181132  n/a   
 
 
-
 
NC_014165  Tbis_2508  restriction modification system DNA specificity domain-containing protein  27.75 
 
 
401 aa  77.4  0.0000000000004  Thermobispora bispora DSM 43833  Bacteria  normal  0.39699  normal  0.700746 
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  22.62 
 
 
432 aa  77  0.0000000000006  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_008340  Mlg_1791  restriction modification system DNA specificity subunit  23.82 
 
 
419 aa  77  0.0000000000007  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.365715  normal 
 
 
-
 
NC_009665  Shew185_2194  restriction modification system DNA specificity subunit  30.14 
 
 
427 aa  76.6  0.0000000000008  Shewanella baltica OS185  Bacteria  normal  0.122675  n/a   
 
 
-
 
NC_010803  Clim_2467  restriction modification system DNA specificity domain  29.73 
 
 
438 aa  76.3  0.0000000000009  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0614  restriction modification system DNA specificity domain protein  24.46 
 
 
401 aa  76.3  0.0000000000009  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003235  type I restriction-modification system specificity subunit S  25.85 
 
 
437 aa  75.9  0.000000000001  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3129  restriction modification system DNA specificity subunit  25.15 
 
 
416 aa  75.9  0.000000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.343622  normal  0.0250234 
 
 
-
 
NC_008576  Mmc1_0132  restriction modification system DNA specificity subunit  23.27 
 
 
427 aa  75.5  0.000000000002  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.47299 
 
 
-
 
NC_009135  MmarC5_0640  restriction modification system DNA specificity subunit  26.07 
 
 
447 aa  75.5  0.000000000002  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_008345  Sfri_2607  restriction modification system DNA specificity subunit  24.47 
 
 
462 aa  74.7  0.000000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2869  type I restriction-modification system, S subunit  26.18 
 
 
448 aa  74.3  0.000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0947716  n/a   
 
 
-
 
NC_010498  EcSMS35_4761  type I restriction modification DNA specificity domain-containing protein  23.67 
 
 
428 aa  73.9  0.000000000005  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_0287  restriction modification system DNA specificity domain protein  23.4 
 
 
429 aa  73.9  0.000000000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009632  SaurJH1_1894  restriction modification system DNA specificity subunit  25.11 
 
 
409 aa  73.6  0.000000000006  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.850685  n/a   
 
 
-
 
NC_009487  SaurJH9_1859  restriction modification system DNA specificity subunit  25.11 
 
 
409 aa  73.6  0.000000000006  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.777891  n/a   
 
 
-
 
NC_010831  Cphamn1_2548  restriction modification system DNA specificity domain  25 
 
 
405 aa  73.2  0.000000000009  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2939  type I restriction-modification system  22.93 
 
 
432 aa  72  0.00000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0304782 
 
 
-
 
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