234 homologs were found in PanDaTox collection
for query gene Pmob_1071 on replicon NC_010003
Organism: Petrotoga mobilis SJ95



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010003  Pmob_1071  restriction modification system DNA specificity subunit  100 
 
 
429 aa  872    Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  41.23 
 
 
429 aa  195  1e-48  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013158  Huta_0102  restriction modification system DNA specificity domain protein  31.69 
 
 
442 aa  167  2e-40  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_008346  Swol_2257  restriction endonuclease S subunits-like protein  31.88 
 
 
413 aa  152  1e-35  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4042  restriction modification system DNA specificity subunit  31.62 
 
 
428 aa  150  6e-35  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_04450  restriction modification system DNA specificity domain protein  35.78 
 
 
422 aa  140  3.9999999999999997e-32  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  34.14 
 
 
424 aa  137  3.0000000000000003e-31  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_009439  Pmen_0564  restriction modification system DNA specificity subunit  26.99 
 
 
415 aa  137  4e-31  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00017151  decreased coverage  6.20122e-17 
 
 
-
 
NC_013440  Hoch_5008  Restriction endonuclease S subunits-like protein  29.3 
 
 
465 aa  135  9.999999999999999e-31  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.441656 
 
 
-
 
NC_011726  PCC8801_2976  restriction modification system DNA specificity domain protein  38.96 
 
 
238 aa  130  4.0000000000000003e-29  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007925  RPC_3653  type I restriction enzyme StySPI specificity protein  32.74 
 
 
460 aa  129  1.0000000000000001e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.234587  normal  0.701676 
 
 
-
 
NC_008740  Maqu_2391  restriction modification system DNA specificity subunit  35.25 
 
 
374 aa  129  1.0000000000000001e-28  Marinobacter aquaeolei VT8  Bacteria  normal  0.164769  n/a   
 
 
-
 
NC_007484  Noc_2904  restriction modification system DNA specificity subunit  30.77 
 
 
425 aa  127  4.0000000000000003e-28  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3055  restriction modification system DNA specificity subunit  49.6 
 
 
411 aa  127  4.0000000000000003e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.363566  normal 
 
 
-
 
NC_008577  Shewana3_3793  restriction modification system DNA specificity subunit  35.19 
 
 
425 aa  127  4.0000000000000003e-28  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0382  type I restriction-modification system, S subunit  29.97 
 
 
439 aa  122  9.999999999999999e-27  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009784  VIBHAR_05614  type I restriction-modification system S subunit  30.84 
 
 
432 aa  118  1.9999999999999998e-25  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008261  CPF_2598  type I restriction-modification enzyme, S subunit  34.11 
 
 
417 aa  114  4.0000000000000004e-24  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0133376  n/a   
 
 
-
 
NC_009076  BURPS1106A_0098  restriction endonuclease S subunits  32.35 
 
 
315 aa  112  1.0000000000000001e-23  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0951  restriction modification system DNA specificity subunit  24.06 
 
 
419 aa  108  2e-22  Psychrobacter cryohalolentis K5  Bacteria  normal  unclonable  0.0000406123 
 
 
-
 
NC_010730  SYO3AOP1_0387  restriction modification system DNA specificity domain  27.13 
 
 
435 aa  107  4e-22  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0681662  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  29.64 
 
 
425 aa  105  2e-21  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_008340  Mlg_0500  restriction modification system DNA specificity subunit  26.7 
 
 
413 aa  102  2e-20  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.565018  normal 
 
 
-
 
NC_007644  Moth_1671  restriction modification system DNA specificity subunit  28.26 
 
 
442 aa  99.8  8e-20  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.517259  hitchhiker  0.00037426 
 
 
-
 
NC_013440  Hoch_2792  restriction modification system DNA specificity domain protein  29.43 
 
 
423 aa  98.2  2e-19  Haliangium ochraceum DSM 14365  Bacteria  normal  0.313089  normal 
 
 
-
 
NC_009049  Rsph17029_1858  restriction modification system DNA specificity subunit  29.07 
 
 
456 aa  98.2  2e-19  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_1897  restriction modification system DNA specificity subunit  30.32 
 
 
433 aa  97.8  3e-19  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1496  restriction modification system DNA specificity domain protein  33.73 
 
 
427 aa  97.8  3e-19  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.136919  normal 
 
 
-
 
NC_007519  Dde_2869  type I restriction-modification system, S subunit  27.97 
 
 
448 aa  97.4  5e-19  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0947716  n/a   
 
 
-
 
NC_010085  Nmar_0605  restriction modification system DNA specificity subunit  33.33 
 
 
453 aa  96.7  8e-19  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_013174  Jden_2249  restriction modification system DNA specificity domain protein  28.65 
 
 
384 aa  96.3  1e-18  Jonesia denitrificans DSM 20603  Bacteria  normal  0.153937  normal 
 
 
-
 
NC_009943  Dole_2926  restriction modification system DNA specificity subunit  28.3 
 
 
434 aa  94.7  3e-18  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1144  restriction modification system DNA specificity subunit  32.75 
 
 
473 aa  94.4  3e-18  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0347  type I restriction-modification system, S subunit  25.96 
 
 
390 aa  92.8  1e-17  Campylobacter lari RM2100  Bacteria  hitchhiker  0.00000269296  n/a   
 
 
-
 
NC_008345  Sfri_2607  restriction modification system DNA specificity subunit  26.74 
 
 
462 aa  92.4  1e-17  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3549  restriction modification system DNA specificity subunit  28.25 
 
 
296 aa  92.8  1e-17  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.348533  normal 
 
 
-
 
NC_007908  Rfer_0030  restriction modification system DNA specificity subunit  29.06 
 
 
447 aa  90.5  5e-17  Rhodoferax ferrireducens T118  Bacteria  normal  0.539395  n/a   
 
 
-
 
NC_008789  Hhal_1153  restriction modification system DNA specificity subunit  23.24 
 
 
429 aa  90.5  5e-17  Halorhodospira halophila SL1  Bacteria  normal  0.487263  n/a   
 
 
-
 
NC_004578  PSPTO_0006  type I restriction-modification system, S subunit, EcoA family  25.12 
 
 
435 aa  90.1  7e-17  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1015  hypothetical protein  26.73 
 
 
477 aa  89.7  9e-17  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_009634  Mevan_0264  restriction modification system DNA specificity subunit  26.96 
 
 
407 aa  89.7  1e-16  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_011831  Cagg_1805  restriction modification system DNA specificity domain protein  25.9 
 
 
423 aa  86.7  7e-16  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.745604  normal  0.535567 
 
 
-
 
NC_013161  Cyan8802_3989  restriction modification system DNA specificity domain protein  28.67 
 
 
456 aa  86.7  7e-16  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0737122 
 
 
-
 
NC_009523  RoseRS_2689  restriction modification system DNA specificity subunit  27.24 
 
 
290 aa  85.5  0.000000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.841682  normal 
 
 
-
 
NC_013501  Rmar_1091  restriction modification system DNA specificity domain protein  28.92 
 
 
444 aa  85.1  0.000000000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  0.17387  n/a   
 
 
-
 
NC_013235  Namu_4622  Restriction endonuclease S subunits-like protein  29.03 
 
 
411 aa  84.7  0.000000000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.156513 
 
 
-
 
NC_007969  Pcryo_1360  restriction modification system DNA specificity subunit  31.05 
 
 
453 aa  84.7  0.000000000000003  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.502069 
 
 
-
 
NC_014210  Ndas_3081  restriction modification system DNA specificity domain protein  30.48 
 
 
415 aa  84.3  0.000000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.758933 
 
 
-
 
NC_009135  MmarC5_0615  restriction modification system DNA specificity subunit  31.11 
 
 
417 aa  83.6  0.000000000000007  Methanococcus maripaludis C5  Archaea  normal  0.0545068  n/a   
 
 
-
 
NC_009783  VIBHAR_01116  hypothetical protein  21.9 
 
 
400 aa  82  0.00000000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009656  PSPA7_0076  type I restriction-modification system subunit S  29.19 
 
 
464 aa  82  0.00000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2194  restriction modification system DNA specificity subunit  28.94 
 
 
427 aa  81.6  0.00000000000002  Shewanella baltica OS185  Bacteria  normal  0.122675  n/a   
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  27.94 
 
 
438 aa  82.4  0.00000000000002  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_007777  Francci3_4012  restriction modification system DNA specificity subunit  26.76 
 
 
436 aa  81.3  0.00000000000003  Frankia sp. CcI3  Bacteria  normal  0.848484  normal  0.567977 
 
 
-
 
NC_008146  Mmcs_3777  restriction endonuclease S subunits-like protein  28.57 
 
 
419 aa  80.5  0.00000000000005  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2421  restriction modification system DNA specificity subunit  23.87 
 
 
402 aa  80.9  0.00000000000005  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.318068 
 
 
-
 
NC_008705  Mkms_3850  restriction endonuclease S subunits-like protein  28.57 
 
 
419 aa  80.5  0.00000000000005  Mycobacterium sp. KMS  Bacteria  normal  0.554786  normal 
 
 
-
 
NC_012794  GWCH70_3443  restriction modification system DNA specificity domain protein  25.72 
 
 
445 aa  79.7  0.00000000000009  Geobacillus sp. WCH70  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_2548  restriction modification system DNA specificity domain  29.73 
 
 
405 aa  79.7  0.0000000000001  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_3940  restriction modification system DNA specificity domain protein  27.83 
 
 
453 aa  75.1  0.000000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_012912  Dd1591_4252  restriction modification system DNA specificity domain protein  25.26 
 
 
462 aa  75.1  0.000000000002  Dickeya zeae Ech1591  Bacteria  normal  0.132013  n/a   
 
 
-
 
NC_012669  Bcav_3914  Restriction endonuclease S subunit  27.68 
 
 
405 aa  73.9  0.000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1783  restriction modification system DNA specificity subunit  23.86 
 
 
448 aa  73.9  0.000000000004  Shewanella sp. MR-7  Bacteria  normal  normal  0.311566 
 
 
-
 
NC_013161  Cyan8802_2277  restriction modification system DNA specificity domain protein  25.98 
 
 
433 aa  73.6  0.000000000007  Cyanothece sp. PCC 8802  Bacteria  normal  0.200455  hitchhiker  0.00000677276 
 
 
-
 
NC_009438  Sputcn32_0160  restriction modification system DNA specificity subunit  27.69 
 
 
399 aa  73.6  0.000000000007  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0944  restriction modification system DNA specificity subunit  24.95 
 
 
420 aa  73.2  0.00000000001  Sulfurimonas denitrificans DSM 1251  Bacteria  hitchhiker  0.00000962716  n/a   
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  27.38 
 
 
413 aa  72.4  0.00000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_009715  CCV52592_1061  putative type I restriction-modification system, S subunit  27.64 
 
 
528 aa  72.8  0.00000000001  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  24.07 
 
 
422 aa  72.4  0.00000000001  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_009975  MmarC6_0041  restriction modification system DNA specificity subunit  25.71 
 
 
397 aa  72  0.00000000002  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0988  type I restriction-modification system, S subunit  26.37 
 
 
401 aa  72  0.00000000002  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.271922  n/a   
 
 
-
 
NC_013730  Slin_6260  restriction modification system DNA specificity domain protein  25.52 
 
 
441 aa  72  0.00000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1778  type I restriction-modification system specificity subunit  25.37 
 
 
419 aa  70.5  0.00000000005  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.926504  n/a   
 
 
-
 
NC_009707  JJD26997_1911  hypothetical protein  28.37 
 
 
453 aa  70.1  0.00000000008  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.568524  n/a   
 
 
-
 
NC_007204  Psyc_0416  type I restriction-modification system S subunit  21.38 
 
 
457 aa  68.9  0.0000000001  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.0531711 
 
 
-
 
NC_009483  Gura_2097  restriction modification system DNA specificity subunit  23.4 
 
 
393 aa  68.2  0.0000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_0640  restriction modification system DNA specificity subunit  23.33 
 
 
447 aa  68.6  0.0000000002  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_011374  UUR10_0040  restriction-modification enzyme subunit s3a  33.55 
 
 
372 aa  68.2  0.0000000003  Ureaplasma urealyticum serovar 10 str. ATCC 33699  Bacteria  normal  0.0522579  n/a   
 
 
-
 
NC_012793  GWCH70_1643  restriction modification system DNA specificity domain protein  25.77 
 
 
428 aa  67.8  0.0000000004  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0334  restriction modification system DNA specificity domain  23.98 
 
 
430 aa  67.8  0.0000000004  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.284396 
 
 
-
 
NC_009939  Dgeo_3109  restriction modification system DNA specificity subunit  21.02 
 
 
426 aa  67.4  0.0000000004  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_3144  restriction modification system DNA specificity domain protein  26.53 
 
 
412 aa  67.4  0.0000000005  Cyanothece sp. PCC 7425  Bacteria  normal  0.527027  normal 
 
 
-
 
NC_002977  MCA1890  type I restriction-modification system, S subunit  29.84 
 
 
416 aa  67.4  0.0000000005  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  23.47 
 
 
457 aa  67  0.0000000005  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_1158  restriction modification system DNA specificity subunit  24.16 
 
 
454 aa  67  0.0000000006  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000117149  normal 
 
 
-
 
NC_007498  Pcar_2924  restriction endonuclease S subunit  23.6 
 
 
394 aa  67  0.0000000006  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_0023  type I restriction-modification system specificity subunit  28.03 
 
 
411 aa  66.2  0.000000001  Mycobacterium sp. MCS  Bacteria  normal  0.834107  n/a   
 
 
-
 
NC_008705  Mkms_0031  type I restriction-modification system specificity subunit  28.03 
 
 
411 aa  66.2  0.000000001  Mycobacterium sp. KMS  Bacteria  normal  0.404176  normal  0.032892 
 
 
-
 
NC_009719  Plav_2346  restriction modification system DNA specificity subunit  27.01 
 
 
392 aa  66.2  0.000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.104931  normal  0.0105772 
 
 
-
 
NC_011884  Cyan7425_3075  restriction modification system DNA specificity domain protein  24.41 
 
 
388 aa  65.5  0.000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.40504  normal 
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  25.7 
 
 
477 aa  65.1  0.000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_3199  restriction modification system DNA specificity subunit  26.79 
 
 
400 aa  65.1  0.000000002  Marinomonas sp. MWYL1  Bacteria  normal  0.365834  normal 
 
 
-
 
NC_009953  Sare_2852  restriction endonuclease S subunits-like protein  24.55 
 
 
412 aa  64.7  0.000000003  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0584008 
 
 
-
 
NC_008740  Maqu_0233  restriction modification system DNA specificity subunit  20.49 
 
 
461 aa  64.7  0.000000003  Marinobacter aquaeolei VT8  Bacteria  normal  0.0967889  n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  22.91 
 
 
456 aa  65.1  0.000000003  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_011083  SeHA_C4930  type I restriction enzyme StySJI specificity protein  22.84 
 
 
469 aa  64.3  0.000000004  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  24.38 
 
 
426 aa  64.3  0.000000005  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_008825  Mpe_A0006  restriction modification system, type I  26.32 
 
 
412 aa  63.2  0.000000008  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_4761  type I restriction modification DNA specificity domain-containing protein  25.28 
 
 
428 aa  63.2  0.000000009  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_1219  restriction modification system DNA specificity domain  28.24 
 
 
412 aa  63.2  0.00000001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
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