239 homologs were found in PanDaTox collection
for query gene Gura_2097 on replicon NC_009483
Organism: Geobacter uraniireducens Rf4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009483  Gura_2097  restriction modification system DNA specificity subunit  100 
 
 
393 aa  812    Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1502  restriction modification system DNA specificity domain  51.13 
 
 
393 aa  410  1e-113  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_2652  Restriction endonuclease S subunits-like protein  49.84 
 
 
413 aa  281  1e-74  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.252104  n/a   
 
 
-
 
NC_008043  TM1040_3540  restriction modification system DNA specificity subunit  36.8 
 
 
387 aa  245  6.999999999999999e-64  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_2421  restriction modification system DNA specificity subunit  36.48 
 
 
402 aa  238  1e-61  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.318068 
 
 
-
 
NC_007908  Rfer_1060  restriction modification system DNA specificity subunit  31.51 
 
 
397 aa  182  6e-45  Rhodoferax ferrireducens T118  Bacteria  normal  0.588803  n/a   
 
 
-
 
NC_009135  MmarC5_1170  restriction modification system DNA specificity subunit  31.91 
 
 
402 aa  182  7e-45  Methanococcus maripaludis C5  Archaea  normal  0.249165  n/a   
 
 
-
 
NC_009483  Gura_1027  restriction modification system DNA specificity subunit  29.83 
 
 
420 aa  154  2.9999999999999998e-36  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3199  restriction modification system DNA specificity subunit  30.83 
 
 
400 aa  154  2.9999999999999998e-36  Marinomonas sp. MWYL1  Bacteria  normal  0.365834  normal 
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  27.97 
 
 
477 aa  152  8e-36  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008639  Cpha266_1131  restriction modification system DNA specificity subunit  29.26 
 
 
413 aa  148  1.0000000000000001e-34  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2028  restriction modification system DNA specificity subunit  27.76 
 
 
391 aa  146  8.000000000000001e-34  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.000400239 
 
 
-
 
NC_011060  Ppha_1452  restriction modification system DNA specificity domain  28.61 
 
 
392 aa  143  6e-33  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.0462219  n/a   
 
 
-
 
NC_010085  Nmar_0605  restriction modification system DNA specificity subunit  39.56 
 
 
453 aa  142  7e-33  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_008043  TM1040_3550  restriction modification system DNA specificity subunit  43.55 
 
 
417 aa  139  1e-31  Ruegeria sp. TM1040  Bacteria  normal  0.257959  normal  0.256697 
 
 
-
 
NC_013161  Cyan8802_0727  restriction modification system DNA specificity domain protein  32.17 
 
 
400 aa  135  9.999999999999999e-31  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0968972 
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  26.09 
 
 
456 aa  134  3.9999999999999996e-30  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_009483  Gura_4042  restriction modification system DNA specificity subunit  25.32 
 
 
428 aa  133  6.999999999999999e-30  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0842  type I restriction-modification enzyme, S subunit, putative  26.61 
 
 
476 aa  128  2.0000000000000002e-28  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2423  restriction modification system DNA specificity subunit  27.48 
 
 
426 aa  127  4.0000000000000003e-28  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.57431  normal 
 
 
-
 
NC_013440  Hoch_5008  Restriction endonuclease S subunits-like protein  30.6 
 
 
465 aa  127  5e-28  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.441656 
 
 
-
 
NC_011071  Smal_1037  restriction modification system DNA specificity domain  32.32 
 
 
364 aa  124  4e-27  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0890662  normal 
 
 
-
 
NC_011662  Tmz1t_3180  restriction modification system DNA specificity domain protein  29.43 
 
 
390 aa  122  9.999999999999999e-27  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3010  restriction endonuclease S subunits-like protein  28.17 
 
 
388 aa  120  3.9999999999999996e-26  Opitutus terrae PB90-1  Bacteria  normal  0.116402  normal  0.20864 
 
 
-
 
NC_009720  Xaut_1095  restriction modification system DNA specificity subunit  27.8 
 
 
450 aa  118  9.999999999999999e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03610  type I site-specific deoxyribonuclease  29.49 
 
 
360 aa  119  9.999999999999999e-26  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  37.99 
 
 
426 aa  113  5e-24  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  38.42 
 
 
409 aa  113  7.000000000000001e-24  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_007514  Cag_1526  restriction endonuclease S subunits-like  30.2 
 
 
386 aa  112  9e-24  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2607  restriction modification system DNA specificity subunit  32.14 
 
 
462 aa  111  2.0000000000000002e-23  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1911  hypothetical protein  32.51 
 
 
453 aa  110  4.0000000000000004e-23  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.568524  n/a   
 
 
-
 
NC_011083  SeHA_C4714  restriction modification system DNA specificity domain  28.01 
 
 
380 aa  108  1e-22  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.232226  normal 
 
 
-
 
NC_011899  Hore_04450  restriction modification system DNA specificity domain protein  23.27 
 
 
422 aa  107  3e-22  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_4189  restriction modification system DNA specificity domain protein  25.32 
 
 
401 aa  104  2e-21  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0599  type I restriction-modification system, S subunit  35.26 
 
 
458 aa  104  3e-21  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4252  restriction modification system DNA specificity domain protein  26.12 
 
 
462 aa  103  4e-21  Dickeya zeae Ech1591  Bacteria  normal  0.132013  n/a   
 
 
-
 
NC_012669  Bcav_0504  restriction modification system DNA specificity domain protein  33.13 
 
 
408 aa  103  5e-21  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011061  Paes_2397  restriction modification system DNA specificity domain  25 
 
 
417 aa  103  5e-21  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000238697  n/a   
 
 
-
 
NC_011899  Hore_20210  restriction modification system DNA specificity domain protein  38.04 
 
 
565 aa  101  2e-20  Halothermothrix orenii H 168  Bacteria  normal  0.266778  n/a   
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  36.08 
 
 
438 aa  100  4e-20  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_009513  Lreu_1433  restriction modification system DNA specificity subunit  27.27 
 
 
372 aa  99.8  7e-20  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_17660  restriction endonuclease S subunit  25.12 
 
 
416 aa  99.8  7e-20  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_008639  Cpha266_0895  N-6 DNA methylase  24.2 
 
 
834 aa  99.8  7e-20  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0804  restriction modification system DNA specificity subunit  26.67 
 
 
368 aa  99.4  1e-19  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.526121  normal  0.427419 
 
 
-
 
NC_012039  Cla_0347  type I restriction-modification system, S subunit  26.2 
 
 
390 aa  95.5  2e-18  Campylobacter lari RM2100  Bacteria  hitchhiker  0.00000269296  n/a   
 
 
-
 
NC_013161  Cyan8802_3989  restriction modification system DNA specificity domain protein  31.12 
 
 
456 aa  94.7  2e-18  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0737122 
 
 
-
 
NC_013730  Slin_3089  restriction modification system DNA specificity domain protein  29.31 
 
 
520 aa  94.7  2e-18  Spirosoma linguale DSM 74  Bacteria  normal  0.497517  normal  0.376247 
 
 
-
 
NC_012669  Bcav_1496  restriction modification system DNA specificity domain protein  31.18 
 
 
427 aa  94.7  2e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.136919  normal 
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  33.89 
 
 
422 aa  93.6  6e-18  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_009051  Memar_1093  restriction modification system DNA specificity subunit  25.15 
 
 
394 aa  90.5  4e-17  Methanoculleus marisnigri JR1  Archaea  normal  0.614941  n/a   
 
 
-
 
NC_013093  Amir_0959  restriction modification system DNA specificity domain protein  32.24 
 
 
442 aa  89.4  1e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  27.78 
 
 
432 aa  88.6  2e-16  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_009049  Rsph17029_1858  restriction modification system DNA specificity subunit  31.21 
 
 
456 aa  88.6  2e-16  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_1635  restriction modification system DNA specificity domain protein  26.18 
 
 
419 aa  87.8  3e-16  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0235263  normal 
 
 
-
 
NC_010658  SbBS512_E4810  putative type I restriction-modification system specificity subunit  26.76 
 
 
360 aa  87.4  4e-16  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0287  type I restriction modification DNA specificity domain-containing protein  29.59 
 
 
471 aa  85.9  0.000000000000001  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2875  restriction modification system DNA specificity domain protein  25.85 
 
 
390 aa  85.1  0.000000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0614  restriction modification system DNA specificity domain protein  26.6 
 
 
401 aa  84.7  0.000000000000002  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2726  restriction modification system DNA specificity subunit  26.38 
 
 
500 aa  85.1  0.000000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0132  restriction modification system DNA specificity subunit  26.2 
 
 
427 aa  85.1  0.000000000000002  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.47299 
 
 
-
 
NC_008347  Mmar10_0162  restriction modification system DNA specificity subunit  29.86 
 
 
383 aa  84.3  0.000000000000003  Maricaulis maris MCS10  Bacteria  normal  normal  0.323401 
 
 
-
 
NC_011830  Dhaf_3953  restriction modification system DNA specificity domain protein  24.63 
 
 
413 aa  84.3  0.000000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  29.03 
 
 
457 aa  83.2  0.000000000000007  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_002977  MCA1890  type I restriction-modification system, S subunit  27.37 
 
 
416 aa  83.2  0.000000000000008  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_011668  Sbal223_4454  restriction modification system DNA specificity domain protein  24.25 
 
 
406 aa  83.2  0.000000000000008  Shewanella baltica OS223  Bacteria  normal  0.859615  normal 
 
 
-
 
NC_011773  BCAH820_0845  restriction modification system DNA specificity domain protein  26.71 
 
 
495 aa  83.2  0.000000000000008  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.31571e-19 
 
 
-
 
NC_009974  Haur_5276  restriction modification system DNA specificity subunit  30.06 
 
 
418 aa  82.8  0.000000000000009  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3569  restriction modification system DNA specificity domain  24.3 
 
 
395 aa  82.4  0.00000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  0.0185936  n/a   
 
 
-
 
NC_011663  Sbal223_3471  restriction modification system DNA specificity domain protein  24.18 
 
 
419 aa  82.4  0.00000000000001  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_1144  restriction modification system DNA specificity subunit  26.85 
 
 
473 aa  81.3  0.00000000000003  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B4821  type I restriction-modification system, endonuclease S subunit  30.17 
 
 
382 aa  80.5  0.00000000000004  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0414  restriction modification system DNA specificity subunit  31.03 
 
 
439 aa  80.9  0.00000000000004  Marinobacter aquaeolei VT8  Bacteria  normal  0.405933  n/a   
 
 
-
 
NC_007908  Rfer_0030  restriction modification system DNA specificity subunit  26.11 
 
 
447 aa  80.5  0.00000000000005  Rhodoferax ferrireducens T118  Bacteria  normal  0.539395  n/a   
 
 
-
 
NC_009707  JJD26997_1851  type I restriction modification DNA specificity domain-containing protein  27.16 
 
 
194 aa  80.5  0.00000000000005  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_0508  restriction modification system DNA specificity subunit  29.87 
 
 
511 aa  79.7  0.00000000000008  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  27.66 
 
 
429 aa  79.3  0.0000000000001  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2724  restriction modification system DNA specificity domain protein  30.1 
 
 
409 aa  79.3  0.0000000000001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  28.8 
 
 
424 aa  78.2  0.0000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_011729  PCC7424_2086  restriction modification system DNA specificity domain protein  23.47 
 
 
417 aa  78.6  0.0000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000683293 
 
 
-
 
NC_007519  Dde_3425  restriction endonuclease S subunits-like  25.73 
 
 
390 aa  77.8  0.0000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.835151  n/a   
 
 
-
 
NC_007969  Pcryo_1360  restriction modification system DNA specificity subunit  27.36 
 
 
453 aa  77.8  0.0000000000003  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.502069 
 
 
-
 
NC_011898  Ccel_2722  restriction modification system DNA specificity domain protein  30.1 
 
 
385 aa  78.2  0.0000000000003  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  29.93 
 
 
616 aa  77.4  0.0000000000004  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2249  restriction modification system DNA specificity domain protein  29.78 
 
 
384 aa  77.4  0.0000000000004  Jonesia denitrificans DSM 20603  Bacteria  normal  0.153937  normal 
 
 
-
 
NC_012912  Dd1591_4240  Restriction endonuclease S subunits-like protein  26.23 
 
 
436 aa  75.1  0.000000000002  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1015  hypothetical protein  26.89 
 
 
477 aa  74.7  0.000000000003  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_008345  Sfri_1954  restriction modification system DNA specificity subunit  31.61 
 
 
406 aa  74.7  0.000000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3081  restriction modification system DNA specificity domain protein  25.59 
 
 
415 aa  73.9  0.000000000005  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.758933 
 
 
-
 
NC_008573  Shewana3_4163  restriction modification system DNA specificity subunit  26.97 
 
 
405 aa  73.6  0.000000000006  Shewanella sp. ANA-3  Bacteria  normal  0.864984  normal  0.0584456 
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  26.14 
 
 
425 aa  73.2  0.000000000007  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_011083  SeHA_C4930  type I restriction enzyme StySJI specificity protein  24.32 
 
 
469 aa  73.2  0.000000000008  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3010  restriction modification system DNA specificity subunit  34.04 
 
 
549 aa  73.2  0.000000000008  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.340841  normal 
 
 
-
 
NC_010814  Glov_0844  restriction endonuclease S subunits-like protein  24.12 
 
 
386 aa  72.8  0.000000000009  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0287  restriction modification system DNA specificity domain protein  32.58 
 
 
429 aa  72.8  0.00000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_2909  restriction modification system DNA specificity subunit  28.78 
 
 
440 aa  72.4  0.00000000001  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05614  type I restriction-modification system S subunit  20.45 
 
 
432 aa  72  0.00000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003235  type I restriction-modification system specificity subunit S  25.97 
 
 
437 aa  71.6  0.00000000002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3129  restriction modification system DNA specificity subunit  32.17 
 
 
416 aa  72  0.00000000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.343622  normal  0.0250234 
 
 
-
 
NC_010831  Cphamn1_2548  restriction modification system DNA specificity domain  25.37 
 
 
405 aa  71.6  0.00000000002  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_009513  Lreu_0871  restriction modification system DNA specificity subunit  25 
 
 
211 aa  71.2  0.00000000003  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
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