133 homologs were found in PanDaTox collection
for query gene Bcav_0504 on replicon NC_012669
Organism: Beutenbergia cavernae DSM 12333



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012669  Bcav_0504  restriction modification system DNA specificity domain protein  100 
 
 
408 aa  842    Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4394  restriction modification system DNA specificity subunit  37.86 
 
 
414 aa  257  2e-67  Flavobacterium johnsoniae UW101  Bacteria  normal  0.536192  n/a   
 
 
-
 
NC_009707  JJD26997_1851  type I restriction modification DNA specificity domain-containing protein  58.2 
 
 
194 aa  241  2e-62  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2423  restriction modification system DNA specificity subunit  35.57 
 
 
426 aa  172  9e-42  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.57431  normal 
 
 
-
 
NC_013522  Taci_1544  restriction modification system DNA specificity domain protein  31.73 
 
 
374 aa  160  3e-38  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3471  restriction modification system DNA specificity domain protein  31.59 
 
 
419 aa  160  3e-38  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010577  XfasM23_2180  restriction modification system DNA specificity subunit  31.16 
 
 
405 aa  150  3e-35  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1954  restriction modification system DNA specificity subunit  31.76 
 
 
406 aa  147  4.0000000000000006e-34  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009634  Mevan_0080  restriction modification system DNA specificity subunit  29.75 
 
 
392 aa  145  1e-33  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1411  type I restriction modification DNA specificity domain-containing protein  30.23 
 
 
382 aa  140  3e-32  Campylobacter concisus 13826  Bacteria  normal  0.202691  n/a   
 
 
-
 
NC_013174  Jden_1500  restriction modification system DNA specificity domain protein  31.6 
 
 
398 aa  134  3e-30  Jonesia denitrificans DSM 20603  Bacteria  normal  0.100633  normal 
 
 
-
 
NC_009052  Sbal_0816  restriction modification system DNA specificity subunit  35.29 
 
 
267 aa  132  1.0000000000000001e-29  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_2272  type I restriction system specificity protein  39.55 
 
 
399 aa  127  4.0000000000000003e-28  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_04450  restriction modification system DNA specificity domain protein  43.23 
 
 
422 aa  124  2e-27  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_1170  restriction modification system DNA specificity subunit  38.89 
 
 
402 aa  117  5e-25  Methanococcus maripaludis C5  Archaea  normal  0.249165  n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  26.53 
 
 
456 aa  116  7.999999999999999e-25  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_009483  Gura_1027  restriction modification system DNA specificity subunit  36.65 
 
 
420 aa  110  6e-23  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  39.24 
 
 
424 aa  108  2e-22  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_008639  Cpha266_0895  N-6 DNA methylase  25.81 
 
 
834 aa  104  3e-21  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2097  restriction modification system DNA specificity subunit  33.13 
 
 
393 aa  103  4e-21  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1060  restriction modification system DNA specificity subunit  36.81 
 
 
397 aa  101  2e-20  Rhodoferax ferrireducens T118  Bacteria  normal  0.588803  n/a   
 
 
-
 
NC_008043  TM1040_3550  restriction modification system DNA specificity subunit  32 
 
 
417 aa  101  3e-20  Ruegeria sp. TM1040  Bacteria  normal  0.257959  normal  0.256697 
 
 
-
 
NC_009707  JJD26997_1911  hypothetical protein  25.33 
 
 
453 aa  99  1e-19  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.568524  n/a   
 
 
-
 
NC_011206  Lferr_0227  restriction modification system DNA specificity domain  25.95 
 
 
395 aa  99.4  1e-19  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  28.17 
 
 
457 aa  99.4  1e-19  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  32.07 
 
 
477 aa  96.7  7e-19  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007955  Mbur_0508  restriction modification system DNA specificity subunit  34.67 
 
 
511 aa  95.1  2e-18  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_010682  Rpic_0448  restriction modification system DNA specificity domain  34.34 
 
 
435 aa  94.7  2e-18  Ralstonia pickettii 12J  Bacteria  normal  hitchhiker  0.00000159098 
 
 
-
 
NC_011884  Cyan7425_3075  restriction modification system DNA specificity domain protein  27.9 
 
 
388 aa  94.7  3e-18  Cyanothece sp. PCC 7425  Bacteria  normal  0.40504  normal 
 
 
-
 
NC_009719  Plav_2346  restriction modification system DNA specificity subunit  31.09 
 
 
392 aa  94  4e-18  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.104931  normal  0.0105772 
 
 
-
 
NC_011899  Hore_20210  restriction modification system DNA specificity domain protein  31.44 
 
 
565 aa  94  5e-18  Halothermothrix orenii H 168  Bacteria  normal  0.266778  n/a   
 
 
-
 
NC_011729  PCC7424_2086  restriction modification system DNA specificity domain protein  30.95 
 
 
417 aa  92.8  1e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000683293 
 
 
-
 
NC_007925  RPC_3653  type I restriction enzyme StySPI specificity protein  27.2 
 
 
460 aa  91.7  2e-17  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.234587  normal  0.701676 
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  26.92 
 
 
422 aa  91.7  2e-17  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_012669  Bcav_1496  restriction modification system DNA specificity domain protein  28.68 
 
 
427 aa  92  2e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.136919  normal 
 
 
-
 
NC_008699  Noca_1105  restriction modification system DNA specificity subunit  32.57 
 
 
225 aa  90.9  4e-17  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0149  restriction modification system DNA specificity subunit  29.24 
 
 
400 aa  89.7  9e-17  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3089  restriction modification system DNA specificity domain protein  30.97 
 
 
520 aa  89  1e-16  Spirosoma linguale DSM 74  Bacteria  normal  0.497517  normal  0.376247 
 
 
-
 
NC_008043  TM1040_3540  restriction modification system DNA specificity subunit  31.71 
 
 
387 aa  88.6  2e-16  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3129  restriction modification system DNA specificity subunit  26.9 
 
 
416 aa  89  2e-16  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.343622  normal  0.0250234 
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  24.14 
 
 
432 aa  87.4  4e-16  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_009974  Haur_5276  restriction modification system DNA specificity subunit  27.63 
 
 
418 aa  87.4  4e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  25.6 
 
 
438 aa  87  6e-16  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_011898  Ccel_2722  restriction modification system DNA specificity domain protein  24.6 
 
 
385 aa  84.7  0.000000000000002  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3055  restriction modification system DNA specificity subunit  30.65 
 
 
411 aa  81.6  0.00000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.363566  normal 
 
 
-
 
NC_008699  Noca_1106  restriction modification system DNA specificity subunit  42.27 
 
 
161 aa  81.3  0.00000000000003  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  27.14 
 
 
429 aa  80.5  0.00000000000005  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_3940  restriction modification system DNA specificity domain protein  22.97 
 
 
453 aa  80.5  0.00000000000005  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  29.67 
 
 
420 aa  80.1  0.00000000000006  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_1122  restriction endonuclease S subunits-like  28.93 
 
 
428 aa  79  0.0000000000001  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.878738  n/a   
 
 
-
 
NC_011149  SeAg_B4821  type I restriction-modification system, endonuclease S subunit  29.29 
 
 
382 aa  79.3  0.0000000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1195  type II restriction-modification enzyme  23.65 
 
 
1343 aa  78.6  0.0000000000002  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_1220  restriction modification system DNA specificity domain protein  25.26 
 
 
620 aa  78.6  0.0000000000002  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1635  restriction modification system DNA specificity domain protein  30.88 
 
 
419 aa  78.6  0.0000000000002  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0235263  normal 
 
 
-
 
NC_011146  Gbem_3569  restriction modification system DNA specificity domain  34.1 
 
 
395 aa  76.3  0.0000000000009  Geobacter bemidjiensis Bem  Bacteria  normal  0.0185936  n/a   
 
 
-
 
NC_008786  Veis_3010  restriction modification system DNA specificity subunit  30 
 
 
549 aa  75.9  0.000000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.340841  normal 
 
 
-
 
NC_013203  Apar_0198  restriction modification system DNA specificity domain protein  27.21 
 
 
386 aa  75.5  0.000000000002  Atopobium parvulum DSM 20469  Bacteria  normal  0.719886  decreased coverage  0.000218103 
 
 
-
 
NC_009049  Rsph17029_1858  restriction modification system DNA specificity subunit  26.07 
 
 
456 aa  74.3  0.000000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_1103  restriction modification system DNA specificity domain protein  29.86 
 
 
400 aa  74.3  0.000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0442932  normal 
 
 
-
 
NC_010803  Clim_0128  N-6 DNA methylase  26.95 
 
 
846 aa  74.3  0.000000000004  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0132  restriction modification system DNA specificity subunit  25.1 
 
 
427 aa  73.2  0.000000000008  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.47299 
 
 
-
 
NC_009483  Gura_4042  restriction modification system DNA specificity subunit  29.22 
 
 
428 aa  72.8  0.000000000009  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1502  restriction modification system DNA specificity domain  24.93 
 
 
393 aa  72.4  0.00000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1015  restriction modification system DNA specificity subunit  25.43 
 
 
575 aa  71.6  0.00000000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  27.65 
 
 
616 aa  72  0.00000000002  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0842  type I restriction-modification enzyme, S subunit, putative  29.76 
 
 
476 aa  71.6  0.00000000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  28.72 
 
 
414 aa  70.9  0.00000000003  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4252  restriction modification system DNA specificity domain protein  26.29 
 
 
462 aa  69.7  0.00000000008  Dickeya zeae Ech1591  Bacteria  normal  0.132013  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  23.75 
 
 
425 aa  69.7  0.00000000008  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_007298  Daro_1307  restriction modification system DNA specificity subunit  28.24 
 
 
285 aa  69.3  0.0000000001  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.186237 
 
 
-
 
NC_008577  Shewana3_2028  restriction modification system DNA specificity subunit  29.47 
 
 
391 aa  68.9  0.0000000001  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.000400239 
 
 
-
 
NC_013946  Mrub_2452  restriction modification system DNA specificity domain-containing protein  28.57 
 
 
419 aa  68.9  0.0000000001  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.587532 
 
 
-
 
NC_011668  Sbal223_4454  restriction modification system DNA specificity domain protein  22.79 
 
 
406 aa  69.7  0.0000000001  Shewanella baltica OS223  Bacteria  normal  0.859615  normal 
 
 
-
 
NC_011830  Dhaf_3953  restriction modification system DNA specificity domain protein  22.83 
 
 
413 aa  67.8  0.0000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  23.42 
 
 
409 aa  67  0.0000000006  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_008573  Shewana3_4163  restriction modification system DNA specificity subunit  29.19 
 
 
405 aa  66.6  0.0000000007  Shewanella sp. ANA-3  Bacteria  normal  0.864984  normal  0.0584456 
 
 
-
 
NC_011901  Tgr7_0599  type I restriction-modification system, S subunit  20.65 
 
 
458 aa  66.6  0.0000000007  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011061  Paes_2397  restriction modification system DNA specificity domain  25 
 
 
417 aa  66.6  0.0000000008  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000238697  n/a   
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  23.42 
 
 
426 aa  66.6  0.0000000008  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_008740  Maqu_0414  restriction modification system DNA specificity subunit  25.98 
 
 
439 aa  66.2  0.0000000009  Marinobacter aquaeolei VT8  Bacteria  normal  0.405933  n/a   
 
 
-
 
NC_008573  Shewana3_4241  restriction modification system DNA specificity subunit  30.06 
 
 
411 aa  65.9  0.000000001  Shewanella sp. ANA-3  Bacteria  normal  0.491612  hitchhiker  0.00127278 
 
 
-
 
NC_004311  BRA0841  type I restriction-modification system, S subunit  27.27 
 
 
407 aa  64.7  0.000000003  Brucella suis 1330  Bacteria  normal  0.629279  n/a   
 
 
-
 
NC_009504  BOV_A0789  type I restriction-modification system, S subunit  27.27 
 
 
407 aa  64.7  0.000000003  Brucella ovis ATCC 25840  Bacteria  normal  0.190219  n/a   
 
 
-
 
NC_013411  GYMC61_0287  restriction modification system DNA specificity domain protein  26.55 
 
 
429 aa  64.3  0.000000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007908  Rfer_0030  restriction modification system DNA specificity subunit  22.83 
 
 
447 aa  63.9  0.000000005  Rhodoferax ferrireducens T118  Bacteria  normal  0.539395  n/a   
 
 
-
 
NC_009720  Xaut_1095  restriction modification system DNA specificity subunit  28.83 
 
 
450 aa  63.9  0.000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2909  restriction modification system DNA specificity subunit  24.6 
 
 
440 aa  63.2  0.000000008  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1852  anti-codon nuclease masking agent  24.24 
 
 
165 aa  63.2  0.000000008  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3425  restriction endonuclease S subunits-like  23.27 
 
 
390 aa  62.8  0.00000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.835151  n/a   
 
 
-
 
NC_007947  Mfla_1176  restriction modification system DNA specificity subunit  28.64 
 
 
408 aa  62.8  0.00000001  Methylobacillus flagellatus KT  Bacteria  normal  0.882603  normal 
 
 
-
 
NC_013456  VEA_003235  type I restriction-modification system specificity subunit S  25.42 
 
 
437 aa  61.6  0.00000002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_2673  restriction modification system DNA specificity subunit  26 
 
 
415 aa  61.2  0.00000003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.574489 
 
 
-
 
NC_011374  UUR10_0107  type I restriction modification DNA specificity family protein  37.14 
 
 
85 aa  61.2  0.00000003  Ureaplasma urealyticum serovar 10 str. ATCC 33699  Bacteria  normal  0.517925  n/a   
 
 
-
 
NC_011726  PCC8801_2978  restriction modification system DNA specificity domain protein  31.1 
 
 
194 aa  60.8  0.00000004  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009715  CCV52592_1061  putative type I restriction-modification system, S subunit  27.01 
 
 
528 aa  59.7  0.00000009  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1064  type I restriction-modification  23.64 
 
 
453 aa  58.9  0.0000001  Synechococcus elongatus PCC 7942  Bacteria  hitchhiker  0.00000898872  normal  0.027841 
 
 
-
 
NC_009513  Lreu_0871  restriction modification system DNA specificity subunit  32.99 
 
 
211 aa  59.7  0.0000001  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0188  N-6 DNA methylase  27.36 
 
 
775 aa  58.9  0.0000001  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.113729  normal 
 
 
-
 
NC_011060  Ppha_1219  restriction modification system DNA specificity domain  21.81 
 
 
412 aa  59.3  0.0000001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3267  restriction modification system DNA specificity subunit  22.34 
 
 
557 aa  58.5  0.0000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0920403  decreased coverage  0.00535253 
 
 
-
 
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