162 homologs were found in PanDaTox collection
for query gene Smal_1037 on replicon NC_011071
Organism: Stenotrophomonas maltophilia R551-3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011071  Smal_1037  restriction modification system DNA specificity domain  100 
 
 
364 aa  752    Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0890662  normal 
 
 
-
 
NC_013946  Mrub_2452  restriction modification system DNA specificity domain-containing protein  32.6 
 
 
419 aa  166  4e-40  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.587532 
 
 
-
 
NC_009975  MmarC6_0041  restriction modification system DNA specificity subunit  29.63 
 
 
397 aa  153  5e-36  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3075  restriction modification system DNA specificity domain protein  30.54 
 
 
388 aa  150  2e-35  Cyanothece sp. PCC 7425  Bacteria  normal  0.40504  normal 
 
 
-
 
NC_008761  Pnap_4778  restriction modification system DNA specificity subunit  31.82 
 
 
415 aa  148  1.0000000000000001e-34  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.16943  normal 
 
 
-
 
NC_010658  SbBS512_E4810  putative type I restriction-modification system specificity subunit  37.82 
 
 
360 aa  143  6e-33  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  31.17 
 
 
413 aa  142  9.999999999999999e-33  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_002977  MCA0836  type I restriction-modification system S subunit  41.62 
 
 
416 aa  141  1.9999999999999998e-32  Methylococcus capsulatus str. Bath  Bacteria  normal  0.444813  n/a   
 
 
-
 
NC_008577  Shewana3_2028  restriction modification system DNA specificity subunit  37.54 
 
 
391 aa  140  3.9999999999999997e-32  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.000400239 
 
 
-
 
NC_011761  AFE_2791  type I restriction-modification system, S subunit  41.86 
 
 
418 aa  136  5e-31  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2415  restriction modification system DNA specificity domain  41.86 
 
 
418 aa  136  5e-31  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.589349  normal  0.260014 
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  48.15 
 
 
414 aa  132  1.0000000000000001e-29  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1094  restriction modification system DNA specificity domain protein  41.55 
 
 
205 aa  128  2.0000000000000002e-28  Methanosphaerula palustris E1-9c  Archaea  normal  0.0782363  normal  0.473834 
 
 
-
 
NC_004578  PSPTO_1087  type I restriction-modification system, S subunit  39.08 
 
 
422 aa  125  1e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.247708  n/a   
 
 
-
 
NC_009483  Gura_2097  restriction modification system DNA specificity subunit  32.32 
 
 
393 aa  124  4e-27  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3768  restriction modification system DNA specificity subunit  42.45 
 
 
374 aa  123  6e-27  Frankia sp. EAN1pec  Bacteria  normal  0.36553  normal 
 
 
-
 
NC_009483  Gura_0549  restriction modification system DNA specificity subunit  35.92 
 
 
385 aa  122  9e-27  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009939  Dgeo_3109  restriction modification system DNA specificity subunit  30.34 
 
 
426 aa  122  9.999999999999999e-27  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_3199  restriction modification system DNA specificity subunit  31.33 
 
 
400 aa  120  3e-26  Marinomonas sp. MWYL1  Bacteria  normal  0.365834  normal 
 
 
-
 
NC_007955  Mbur_1218  restriction modification system DNA specificity subunit  28.12 
 
 
351 aa  120  4.9999999999999996e-26  Methanococcoides burtonii DSM 6242  Archaea  normal  0.67755  n/a   
 
 
-
 
NC_013158  Huta_0102  restriction modification system DNA specificity domain protein  34.15 
 
 
442 aa  118  1.9999999999999998e-25  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_007413  Ava_3499  restriction modification system DNA specificity subunit  36.25 
 
 
405 aa  117  3.9999999999999997e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.082109 
 
 
-
 
NC_009943  Dole_2726  restriction modification system DNA specificity subunit  27.32 
 
 
500 aa  114  3e-24  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2910  putative type I restriction-modification system, S subunit  35.8 
 
 
373 aa  112  1.0000000000000001e-23  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2421  restriction modification system DNA specificity subunit  39.77 
 
 
402 aa  109  9.000000000000001e-23  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.318068 
 
 
-
 
NC_009523  RoseRS_0735  restriction modification system DNA specificity subunit  25.89 
 
 
392 aa  107  2e-22  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.142305 
 
 
-
 
NC_009051  Memar_1093  restriction modification system DNA specificity subunit  26.17 
 
 
394 aa  105  1e-21  Methanoculleus marisnigri JR1  Archaea  normal  0.614941  n/a   
 
 
-
 
NC_009379  Pnuc_1132  restriction modification system DNA specificity subunit  34.78 
 
 
556 aa  103  4e-21  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.817215  n/a   
 
 
-
 
NC_008025  Dgeo_2016  restriction modification system DNA specificity subunit  34.52 
 
 
417 aa  99.8  7e-20  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0839323  normal 
 
 
-
 
NC_011083  SeHA_C4714  restriction modification system DNA specificity domain  30.08 
 
 
380 aa  97.8  2e-19  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.232226  normal 
 
 
-
 
NC_007908  Rfer_1060  restriction modification system DNA specificity subunit  50.55 
 
 
397 aa  98.2  2e-19  Rhodoferax ferrireducens T118  Bacteria  normal  0.588803  n/a   
 
 
-
 
NC_011761  AFE_1576  type I restriction-modification system, S subunit  30.94 
 
 
399 aa  97.4  3e-19  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.200835  n/a   
 
 
-
 
NC_011663  Sbal223_4189  restriction modification system DNA specificity domain protein  29.93 
 
 
401 aa  95.1  2e-18  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_0727  restriction modification system DNA specificity domain protein  30.68 
 
 
400 aa  94.4  3e-18  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0968972 
 
 
-
 
NC_008740  Maqu_0414  restriction modification system DNA specificity subunit  25.75 
 
 
439 aa  94.4  3e-18  Marinobacter aquaeolei VT8  Bacteria  normal  0.405933  n/a   
 
 
-
 
NC_008541  Arth_0987  restriction modification system DNA specificity subunit  32.37 
 
 
390 aa  93.2  7e-18  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3180  restriction modification system DNA specificity domain protein  31.15 
 
 
390 aa  92.4  1e-17  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0198  restriction modification system DNA specificity domain protein  27.91 
 
 
386 aa  91.3  2e-17  Atopobium parvulum DSM 20469  Bacteria  normal  0.719886  decreased coverage  0.000218103 
 
 
-
 
NC_010577  XfasM23_2176  restriction modification system DNA specificity subunit  31.4 
 
 
444 aa  90.5  4e-17  Xylella fastidiosa M23  Bacteria  normal  0.962317  n/a   
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  26.69 
 
 
426 aa  90.1  5e-17  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_009135  MmarC5_1170  restriction modification system DNA specificity subunit  29.29 
 
 
402 aa  89.7  7e-17  Methanococcus maripaludis C5  Archaea  normal  0.249165  n/a   
 
 
-
 
NC_008786  Veis_1566  restriction modification system DNA specificity subunit  29.6 
 
 
403 aa  89.4  1e-16  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0293394  unclonable  0.0000192379 
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  27.53 
 
 
409 aa  88.2  2e-16  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_010571  Oter_3010  restriction endonuclease S subunits-like protein  50.67 
 
 
388 aa  86.7  6e-16  Opitutus terrae PB90-1  Bacteria  normal  0.116402  normal  0.20864 
 
 
-
 
NC_011149  SeAg_B4821  type I restriction-modification system, endonuclease S subunit  24.44 
 
 
382 aa  85.9  9e-16  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_0162  restriction modification system DNA specificity subunit  27.38 
 
 
383 aa  85.9  0.000000000000001  Maricaulis maris MCS10  Bacteria  normal  normal  0.323401 
 
 
-
 
NC_008312  Tery_4472  restriction modification system DNA specificity subunit  31.45 
 
 
415 aa  85.1  0.000000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  0.270866  normal  0.0902542 
 
 
-
 
NC_012912  Dd1591_4240  Restriction endonuclease S subunits-like protein  28 
 
 
436 aa  83.6  0.000000000000005  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_1061  putative type I restriction-modification system, S subunit  28.74 
 
 
528 aa  83.2  0.000000000000006  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2682  putative restriction endonuclease S subunit  21.57 
 
 
400 aa  83.2  0.000000000000007  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.845062  normal 
 
 
-
 
NC_008599  CFF8240_1393  restriction and modification enzyme CjeI  38.85 
 
 
1285 aa  82.8  0.000000000000007  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  27.73 
 
 
457 aa  82.8  0.00000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009565  TBFG_12768  type I restriction/modification system specificity determinant hsdS.1  44.32 
 
 
91 aa  81.3  0.00000000000002  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1672  restriction modification system DNA specificity domain protein  29.21 
 
 
493 aa  80.1  0.00000000000006  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0808  specificity determinant HsdS-like  31.87 
 
 
363 aa  79  0.0000000000001  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.361917  n/a   
 
 
-
 
NC_011004  Rpal_1502  restriction modification system DNA specificity domain  28.05 
 
 
393 aa  79.3  0.0000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0804  restriction modification system DNA specificity subunit  31.58 
 
 
368 aa  79  0.0000000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.526121  normal  0.427419 
 
 
-
 
NC_011726  PCC8801_2988  restriction modification system DNA specificity domain protein  29.82 
 
 
386 aa  78.6  0.0000000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007969  Pcryo_0951  restriction modification system DNA specificity subunit  22.22 
 
 
419 aa  77  0.0000000000004  Psychrobacter cryohalolentis K5  Bacteria  normal  unclonable  0.0000406123 
 
 
-
 
NC_009052  Sbal_4348  restriction modification system DNA specificity subunit  27.59 
 
 
363 aa  76.6  0.0000000000006  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011668  Sbal223_4454  restriction modification system DNA specificity domain protein  29.38 
 
 
406 aa  75.9  0.0000000000009  Shewanella baltica OS223  Bacteria  normal  0.859615  normal 
 
 
-
 
NC_009832  Spro_4083  restriction modification system DNA specificity subunit  24.91 
 
 
409 aa  75.1  0.000000000002  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_2673  restriction modification system DNA specificity subunit  32.88 
 
 
415 aa  74.7  0.000000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.574489 
 
 
-
 
NC_008532  STER_0750  restriction endonuclease S subunit  22.14 
 
 
387 aa  74.3  0.000000000003  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1131  restriction modification system DNA specificity subunit  25.18 
 
 
413 aa  73.9  0.000000000004  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1153  restriction modification system DNA specificity subunit  23.14 
 
 
429 aa  73.9  0.000000000004  Halorhodospira halophila SL1  Bacteria  normal  0.487263  n/a   
 
 
-
 
NC_009483  Gura_1027  restriction modification system DNA specificity subunit  36.36 
 
 
420 aa  73.9  0.000000000004  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2194  restriction modification system DNA specificity subunit  26.81 
 
 
427 aa  73.9  0.000000000004  Shewanella baltica OS185  Bacteria  normal  0.122675  n/a   
 
 
-
 
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  25.78 
 
 
616 aa  73.2  0.000000000006  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03610  type I site-specific deoxyribonuclease  26.15 
 
 
360 aa  73.2  0.000000000007  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0149  restriction modification system DNA specificity subunit  28.35 
 
 
400 aa  71.6  0.00000000002  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009513  Lreu_1433  restriction modification system DNA specificity subunit  25.7 
 
 
372 aa  71.6  0.00000000002  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1452  restriction modification system DNA specificity domain  25.34 
 
 
392 aa  70.5  0.00000000005  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.0462219  n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  23.91 
 
 
456 aa  70.1  0.00000000006  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_012917  PC1_2875  restriction modification system DNA specificity domain protein  47.89 
 
 
390 aa  69.7  0.00000000007  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_1435  restriction modification system DNA specificity subunit  25.86 
 
 
340 aa  69.3  0.0000000001  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_0901  restriction endonuclease S subunit  24.83 
 
 
363 aa  68.6  0.0000000002  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.000000124976  hitchhiker  0.000000573897 
 
 
-
 
NC_008751  Dvul_0487  restriction modification system DNA specificity subunit  26.18 
 
 
438 aa  68.6  0.0000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  0.700794  normal  0.0187002 
 
 
-
 
NC_009441  Fjoh_2698  restriction modification system DNA specificity subunit  27.36 
 
 
267 aa  68.6  0.0000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0854775  n/a   
 
 
-
 
NC_009565  TBFG_12774  type I restriction/modification system specificity determinant hsdS  29.1 
 
 
364 aa  67.8  0.0000000003  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0249  restriction modification system DNA specificity subunit  24.54 
 
 
393 aa  67.8  0.0000000003  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0005  restriction modification system DNA specificity domain protein  22.6 
 
 
378 aa  67.4  0.0000000004  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE2743  type I restriction-modification system, S subunit, truncation  25.85 
 
 
175 aa  67  0.0000000005  Treponema denticola ATCC 35405  Bacteria  normal  0.441032  n/a   
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  23.05 
 
 
432 aa  67  0.0000000005  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_011206  Lferr_0227  restriction modification system DNA specificity domain  25.48 
 
 
395 aa  66.2  0.0000000009  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3540  restriction modification system DNA specificity subunit  26.58 
 
 
387 aa  65.5  0.000000002  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  23.94 
 
 
422 aa  64.7  0.000000002  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_009661  Shew185_4455  restriction modification system DNA specificity subunit  22.16 
 
 
388 aa  64.7  0.000000002  Shewanella baltica OS185  Bacteria  normal  0.353509  normal 
 
 
-
 
NC_013411  GYMC61_0287  restriction modification system DNA specificity domain protein  24.18 
 
 
429 aa  64.3  0.000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008530  LGAS_0899  restriction endonuclease S subunit  27.96 
 
 
396 aa  63.5  0.000000005  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.0000000681459  hitchhiker  0.00000169581 
 
 
-
 
NC_008255  CHU_3351  type I site-specific deoxyribonuclease S subunit  21.78 
 
 
354 aa  62  0.00000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00146581  normal  0.0102246 
 
 
-
 
NC_013093  Amir_0959  restriction modification system DNA specificity domain protein  23.41 
 
 
442 aa  62.4  0.00000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3129  restriction modification system DNA specificity subunit  24.47 
 
 
416 aa  62.8  0.00000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.343622  normal  0.0250234 
 
 
-
 
NC_007519  Dde_3425  restriction endonuclease S subunits-like  23.61 
 
 
390 aa  61.6  0.00000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.835151  n/a   
 
 
-
 
NC_008346  Swol_0515  type I restriction-modification system (specificity subunit)  24.62 
 
 
263 aa  61.6  0.00000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  24.23 
 
 
420 aa  60.1  0.00000006  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0347  type I restriction-modification system, S subunit  24.91 
 
 
390 aa  59.7  0.00000008  Campylobacter lari RM2100  Bacteria  hitchhiker  0.00000269296  n/a   
 
 
-
 
NC_008576  Mmc1_0132  restriction modification system DNA specificity subunit  22.73 
 
 
427 aa  59.3  0.0000001  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.47299 
 
 
-
 
NC_009438  Sputcn32_2909  restriction modification system DNA specificity subunit  22.94 
 
 
440 aa  58.9  0.0000001  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2093  restriction modification system DNA specificity subunit  29.79 
 
 
477 aa  58.5  0.0000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
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