Gene TM1040_3540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3540 
Symbol 
ID4075218 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp579025 
End bp580188 
Gene Length1164 bp 
Protein Length387 aa 
Translation table11 
GC content55% 
IMG OID638005054 
Productrestriction modification system DNA specificity subunit 
Protein accessionYP_611773 
Protein GI99078515 
COG category[V] Defense mechanisms 
COG ID[COG0732] Restriction endonuclease S subunits 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTCAG TGGCCCTCGG TGAGTTGGTT GAAATCAGAG GCGGCGGCAC GCCGGACAAG 
AAGGTTCCAG ATTACTGGGA CGGCGATATT CCTTGGGCAT CTGTGAAGGA CTTCAAAAGC
ACATCGCTCG CCTCAACCAT CGACCGGATA ACGCAAGCGG GTGTCGCGAA CTCTGCCACT
CAAGTTATCC CTGCTGGAAA CATTATCGTC CCGACGCGTA TGGCGGTTGG TAAGGCAGCA
ATCAATGAGA TCGACCTAGC GATCAATCAA GACCTGAAGG CGCTGATCCC AAGCCAACGG
ATCGACCGCC AATACCTTCT GCATGCCCTT CTAGCCAACG CAAAGACGCT CGAAGACCAA
GCCACAGGGG CTACCGTGAA GGGCATCAAG CTTGATGCTT TGAGATCTTT ACAAATCCCC
CTCCCTCCGT TGCAGGAGCA GAGGCGGATT GCGGGAATAC TGGATCAGGC AGACGCGCTC
CGCCGCTTCC GCACCCGCGC CCTCGACAAA CTGGGCACCC TCGGCCAGGC GATCTTTCAT
GAGATGTTTG GGGCAAGCTC TCCTGACCAT GCTGCGTGGG AGAAAATCAA TCTGAGCGAA
CTGGTTCTGC CTGATGACCG CATCAATTAT GGTGTCGTAC AGCCTGGCCC TCACGACCCC
GAAGGGGTTC CGATCATTCG TGTCGCCGAT CTAGCGAGCC CGGTGGTCGC TTTTGATTCA
ATCAAACGGA TCGCCCCGAG CATTGATGCA GAGTACGGGC GTTCAAGATT GAAGGGCGGT
GAAGTGCTAA TCGGCTGCGT CGGTTCGATT GGCACGACAA TCATCGCTCC TCCAGAGTTC
GCAGGAGCAA ATGTTGCTCG CGCGGTTGCG CGTGTTCCCC TCGACACCAG CAGATGTGAA
CCGAGGTTTG TCGCTGAGCA ACTACGATCT CAGCGGATAC AAAATTACTT CACAAAAGAG
GTCCGGCTTG TTGCGCAGCC CACCCTGAAC ATCAAGCAAA TTCGCGAGAC AGAAATCATT
CTTCCGCCAA AGGAGCTGCA GGTTTCGTTT GTTGAACGTG TTCATGAAAT CGAAGCCCAA
AAAGCCCAGC ACGCAGCAGC TCTGACGGCA TGCGACGTGC TCTTTGCTTC CCTTCAGTCA
ACGGCTTTCC GGGGGGAAGT GTAA
 
Protein sequence
MSSVALGELV EIRGGGTPDK KVPDYWDGDI PWASVKDFKS TSLASTIDRI TQAGVANSAT 
QVIPAGNIIV PTRMAVGKAA INEIDLAINQ DLKALIPSQR IDRQYLLHAL LANAKTLEDQ
ATGATVKGIK LDALRSLQIP LPPLQEQRRI AGILDQADAL RRFRTRALDK LGTLGQAIFH
EMFGASSPDH AAWEKINLSE LVLPDDRINY GVVQPGPHDP EGVPIIRVAD LASPVVAFDS
IKRIAPSIDA EYGRSRLKGG EVLIGCVGSI GTTIIAPPEF AGANVARAVA RVPLDTSRCE
PRFVAEQLRS QRIQNYFTKE VRLVAQPTLN IKQIRETEII LPPKELQVSF VERVHEIEAQ
KAQHAAALTA CDVLFASLQS TAFRGEV