| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0864 |
|---|
| Symbol | |
|---|
| ID | 8131789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1005819 |
|---|
| End bp | 1007060 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644864145 |
|---|
| Product | restriction modification system DNA specificity domain protein |
|---|
| Protein accession | YP_003016451 |
|---|
| Protein GI | 253687261 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0732] Restriction endonuclease S subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0689213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGATC TAATAGTGGA TAAACAGCAG TCCGGTGCCG CAGGGAAAGG TGTTCCTGCT
GGCTGGCTCC AGTGTAAATT GGGTGATGTG TTAACCCTAC AACGTGGCTT TGATTTACCT
CAACGTTTAA GAAAAGAAGG CAACATCCCA ATTATTTCTT CGTCTGGAGA AAGCGGTTGG
CATAACAACG CTATCGTTTC ACCACCAGGT ATTGTTACAG GGCGATATGG CACTATTGGC
GAAGTATTTT TCATTGATAA GCCTTTTTGG CCGCTCAATA CAACGCTTTA CGTTCGGGAG
TTCAAAGGAA TTACACCTTC TTATGCCTAC TTCTTACTTA AGACGGTAGA TTTCCAATCT
CACAGTGGCA AAAGCGGTGT TCCGGGTGTT AATCGTAATG ATGTGCATCA GGAAAATATT
CTTTTACCTC CGATAAAAGA ACAAATTGCT ATCACCACTA CGCTGTCAAA TATTGACGAG
TTAATTAGTG CTTTAGAAAG ATTACTATCC AAAAAACAAG CTATCAAAAC AGCCACCATG
CAACAACTGC TTACGGGTAA AACCCGTTTG CCGCAGTTTG CGTTGCGGGA GGATGGGGCT
GCTAAGGGAT ACCAAAAAAG TGAATTAGGG GAAATCCCTG AGGATTGGAC AGTTACTCTA
CTGAATGATG TTATAGATTC CTGCTCAAGT GGAGCAACAC CATATCGTGG TATTTCTGAA
TATTACAAAG GAAACAACCG CTGGATCACC AGTGGTGAGC TCAATTATTG TGTTATCAAT
GACACAATAG AGAAAATTAG TGACAGTGCT ATTAAATATA CAAATCTGAA AATTCATCCC
GCAGGAACAT TCCTGATGGC GATAACAGGT CTTGAAGCCG CAGGAACACG CGGCGCTTGT
GGGATTGTCG GTAAACCTTC TGCTACAAAT CAGTCTTGTA TGGCTATCTA TCCCAATAAT
AAGCTGGATA GTAACTATCT TTATCACTGG TATGTTTACA ATGGTGATAC CTTGGCATTT
AAATACTGTC AGGGGACAAA ACAATTAAGC TATACGGCTG GTTTAATTAG AAAAATACCA
TTGTTCTTAC CAACTGATAA AAAAGAACAA ACCGCCATCG CCGCCATCCT CTCCGATATG
GACAAGGACA TTCAGACCCT GCAACAGCGT CTGGAGAAAA CCCGCCAGCT TAAGCAGGGG
ATGATGCAGG AACTGTTAAC CGGGAAAACC CGCTTAATAT AG
|
|---|
| Protein sequence | MVDLIVDKQQ SGAAGKGVPA GWLQCKLGDV LTLQRGFDLP QRLRKEGNIP IISSSGESGW
HNNAIVSPPG IVTGRYGTIG EVFFIDKPFW PLNTTLYVRE FKGITPSYAY FLLKTVDFQS
HSGKSGVPGV NRNDVHQENI LLPPIKEQIA ITTTLSNIDE LISALERLLS KKQAIKTATM
QQLLTGKTRL PQFALREDGA AKGYQKSELG EIPEDWTVTL LNDVIDSCSS GATPYRGISE
YYKGNNRWIT SGELNYCVIN DTIEKISDSA IKYTNLKIHP AGTFLMAITG LEAAGTRGAC
GIVGKPSATN QSCMAIYPNN KLDSNYLYHW YVYNGDTLAF KYCQGTKQLS YTAGLIRKIP
LFLPTDKKEQ TAIAAILSDM DKDIQTLQQR LEKTRQLKQG MMQELLTGKT RLI
|
|---|
| |