218 homologs were found in PanDaTox collection
for query gene MmarC5_1170 on replicon NC_009135
Organism: Methanococcus maripaludis C5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009135  MmarC5_1170  restriction modification system DNA specificity subunit  100 
 
 
402 aa  810    Methanococcus maripaludis C5  Archaea  normal  0.249165  n/a   
 
 
-
 
NC_009483  Gura_1027  restriction modification system DNA specificity subunit  39.09 
 
 
420 aa  282  6.000000000000001e-75  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2097  restriction modification system DNA specificity subunit  31.91 
 
 
393 aa  182  7e-45  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4240  Restriction endonuclease S subunits-like protein  36.27 
 
 
436 aa  178  2e-43  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1060  restriction modification system DNA specificity subunit  29.18 
 
 
397 aa  171  2e-41  Rhodoferax ferrireducens T118  Bacteria  normal  0.588803  n/a   
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  29.31 
 
 
477 aa  148  2.0000000000000003e-34  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_2028  restriction modification system DNA specificity subunit  28.43 
 
 
391 aa  140  4.999999999999999e-32  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.000400239 
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  38.34 
 
 
457 aa  139  7.999999999999999e-32  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_0006  type I restriction-modification system, S subunit, EcoA family  30.45 
 
 
435 aa  133  3.9999999999999996e-30  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2086  restriction modification system DNA specificity domain protein  38.5 
 
 
417 aa  133  3.9999999999999996e-30  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000683293 
 
 
-
 
NC_008312  Tery_2421  restriction modification system DNA specificity subunit  27.45 
 
 
402 aa  130  5.0000000000000004e-29  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.318068 
 
 
-
 
NC_009654  Mmwyl1_3199  restriction modification system DNA specificity subunit  28.16 
 
 
400 aa  130  6e-29  Marinomonas sp. MWYL1  Bacteria  normal  0.365834  normal 
 
 
-
 
NC_011899  Hore_04450  restriction modification system DNA specificity domain protein  28.88 
 
 
422 aa  128  2.0000000000000002e-28  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1502  restriction modification system DNA specificity domain  28.39 
 
 
393 aa  125  9e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  31.61 
 
 
456 aa  123  4e-27  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  36.6 
 
 
425 aa  122  9.999999999999999e-27  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_013730  Slin_3089  restriction modification system DNA specificity domain protein  36.09 
 
 
520 aa  122  9.999999999999999e-27  Spirosoma linguale DSM 74  Bacteria  normal  0.497517  normal  0.376247 
 
 
-
 
NC_011060  Ppha_1452  restriction modification system DNA specificity domain  27.85 
 
 
392 aa  120  3e-26  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.0462219  n/a   
 
 
-
 
NC_012669  Bcav_0504  restriction modification system DNA specificity domain protein  38.89 
 
 
408 aa  117  5e-25  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  36.75 
 
 
616 aa  116  6e-25  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  39.6 
 
 
420 aa  116  6.9999999999999995e-25  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3540  restriction modification system DNA specificity subunit  22.47 
 
 
387 aa  115  1.0000000000000001e-24  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1858  restriction modification system DNA specificity subunit  33.53 
 
 
456 aa  114  3e-24  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2875  restriction modification system DNA specificity domain protein  27.41 
 
 
390 aa  111  2.0000000000000002e-23  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1307  restriction modification system DNA specificity subunit  38 
 
 
285 aa  110  5e-23  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.186237 
 
 
-
 
NC_013456  VEA_003235  type I restriction-modification system specificity subunit S  33.89 
 
 
437 aa  108  1e-22  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_1526  restriction endonuclease S subunits-like  28.18 
 
 
386 aa  108  2e-22  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1195  type II restriction-modification enzyme  40 
 
 
1343 aa  107  5e-22  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0448  restriction modification system DNA specificity domain  32.8 
 
 
435 aa  106  7e-22  Ralstonia pickettii 12J  Bacteria  normal  hitchhiker  0.00000159098 
 
 
-
 
NC_013161  Cyan8802_0727  restriction modification system DNA specificity domain protein  31.03 
 
 
400 aa  106  9e-22  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0968972 
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  34.5 
 
 
424 aa  105  2e-21  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_009051  Memar_1093  restriction modification system DNA specificity subunit  27.98 
 
 
394 aa  103  4e-21  Methanoculleus marisnigri JR1  Archaea  normal  0.614941  n/a   
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  31.66 
 
 
429 aa  103  5e-21  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3653  type I restriction enzyme StySPI specificity protein  29.89 
 
 
460 aa  103  7e-21  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.234587  normal  0.701676 
 
 
-
 
NC_009974  Haur_5276  restriction modification system DNA specificity subunit  35.22 
 
 
418 aa  102  1e-20  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1635  restriction modification system DNA specificity domain protein  26 
 
 
419 aa  101  2e-20  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0235263  normal 
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  35.54 
 
 
432 aa  100  4e-20  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_008709  Ping_0149  restriction modification system DNA specificity subunit  31.98 
 
 
400 aa  100  5e-20  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0390  restriction modification system DNA specificity domain protein  26.3 
 
 
642 aa  100  5e-20  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.0000219621 
 
 
-
 
NC_008639  Cpha266_1131  restriction modification system DNA specificity subunit  28.38 
 
 
413 aa  99  1e-19  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  29.63 
 
 
426 aa  98.2  2e-19  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_012669  Bcav_1496  restriction modification system DNA specificity domain protein  30.41 
 
 
427 aa  97.8  3e-19  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.136919  normal 
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  29.63 
 
 
409 aa  97.4  4e-19  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_013169  Ksed_13680  hypothetical protein  25.48 
 
 
354 aa  97.4  4e-19  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.247083  normal  0.424884 
 
 
-
 
NC_003909  BCE_0842  type I restriction-modification enzyme, S subunit, putative  26.54 
 
 
476 aa  97.1  6e-19  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  32.52 
 
 
438 aa  94  5e-18  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_007955  Mbur_0508  restriction modification system DNA specificity subunit  33.33 
 
 
511 aa  93.6  5e-18  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_011663  Sbal223_4189  restriction modification system DNA specificity domain protein  25.2 
 
 
401 aa  93.6  6e-18  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_0128  N-6 DNA methylase  23.12 
 
 
846 aa  92  2e-17  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1311  restriction modification system DNA specificity subunit  29.95 
 
 
578 aa  91.7  2e-17  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011899  Hore_20210  restriction modification system DNA specificity domain protein  33.14 
 
 
565 aa  91.7  2e-17  Halothermothrix orenii H 168  Bacteria  normal  0.266778  n/a   
 
 
-
 
NC_007413  Ava_3267  restriction modification system DNA specificity subunit  30.54 
 
 
557 aa  91.3  3e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0920403  decreased coverage  0.00535253 
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  31.67 
 
 
422 aa  90.5  5e-17  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_011083  SeHA_C4714  restriction modification system DNA specificity domain  25 
 
 
380 aa  90.1  6e-17  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.232226  normal 
 
 
-
 
NC_011071  Smal_1037  restriction modification system DNA specificity domain  29.29 
 
 
364 aa  89.7  8e-17  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0890662  normal 
 
 
-
 
NC_007514  Cag_1122  restriction endonuclease S subunits-like  30.73 
 
 
428 aa  89  1e-16  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.878738  n/a   
 
 
-
 
NC_011061  Paes_2397  restriction modification system DNA specificity domain  26.34 
 
 
417 aa  89.4  1e-16  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000238697  n/a   
 
 
-
 
NC_008573  Shewana3_4241  restriction modification system DNA specificity subunit  26.61 
 
 
411 aa  89  1e-16  Shewanella sp. ANA-3  Bacteria  normal  0.491612  hitchhiker  0.00127278 
 
 
-
 
NC_008786  Veis_2423  restriction modification system DNA specificity subunit  31.33 
 
 
426 aa  89  1e-16  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.57431  normal 
 
 
-
 
NC_011206  Lferr_0227  restriction modification system DNA specificity domain  23.21 
 
 
395 aa  88.2  2e-16  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3010  restriction endonuclease S subunits-like protein  23.96 
 
 
388 aa  88.6  2e-16  Opitutus terrae PB90-1  Bacteria  normal  0.116402  normal  0.20864 
 
 
-
 
NC_011726  PCC8801_2978  restriction modification system DNA specificity domain protein  30.6 
 
 
194 aa  88.6  2e-16  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013440  Hoch_2792  restriction modification system DNA specificity domain protein  28.68 
 
 
423 aa  88.2  2e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  0.313089  normal 
 
 
-
 
NC_009438  Sputcn32_0160  restriction modification system DNA specificity subunit  34.12 
 
 
399 aa  88.6  2e-16  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0959  restriction modification system DNA specificity domain protein  28.57 
 
 
442 aa  87.8  3e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4042  restriction modification system DNA specificity subunit  21.57 
 
 
428 aa  87.4  4e-16  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3550  restriction modification system DNA specificity subunit  33.33 
 
 
417 aa  85.1  0.000000000000002  Ruegeria sp. TM1040  Bacteria  normal  0.257959  normal  0.256697 
 
 
-
 
NC_012912  Dd1591_4252  restriction modification system DNA specificity domain protein  29.17 
 
 
462 aa  84.7  0.000000000000003  Dickeya zeae Ech1591  Bacteria  normal  0.132013  n/a   
 
 
-
 
NC_009513  Lreu_1433  restriction modification system DNA specificity subunit  25.19 
 
 
372 aa  84.3  0.000000000000004  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1219  restriction modification system DNA specificity domain  33.78 
 
 
412 aa  83.6  0.000000000000005  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3599  restriction modification system DNA specificity domain protein  25.79 
 
 
532 aa  83.6  0.000000000000006  Thauera sp. MZ1T  Bacteria  normal  0.743632  n/a   
 
 
-
 
NC_011138  MADE_03610  type I site-specific deoxyribonuclease  26.46 
 
 
360 aa  83.6  0.000000000000006  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0193  type I restriction-modification system specificity determinant  26.09 
 
 
416 aa  82.8  0.00000000000001  Frankia sp. CcI3  Bacteria  normal  normal  0.311495 
 
 
-
 
NC_011668  Sbal223_4454  restriction modification system DNA specificity domain protein  24.29 
 
 
406 aa  82  0.00000000000002  Shewanella baltica OS223  Bacteria  normal  0.859615  normal 
 
 
-
 
NC_013411  GYMC61_0287  restriction modification system DNA specificity domain protein  33.13 
 
 
429 aa  82  0.00000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008530  LGAS_0899  restriction endonuclease S subunit  23.17 
 
 
396 aa  81.6  0.00000000000002  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.0000000681459  hitchhiker  0.00000169581 
 
 
-
 
NC_011662  Tmz1t_3180  restriction modification system DNA specificity domain protein  24.14 
 
 
390 aa  82  0.00000000000002  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0414  restriction modification system DNA specificity subunit  24.73 
 
 
439 aa  81.6  0.00000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  0.405933  n/a   
 
 
-
 
NC_010682  Rpic_3173  restriction modification system, type I  24.41 
 
 
394 aa  81.6  0.00000000000002  Ralstonia pickettii 12J  Bacteria  normal  unclonable  0.0000000000000252983 
 
 
-
 
NC_008345  Sfri_1954  restriction modification system DNA specificity subunit  33.14 
 
 
406 aa  81.3  0.00000000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1064  type I restriction-modification  32.76 
 
 
453 aa  80.9  0.00000000000004  Synechococcus elongatus PCC 7942  Bacteria  hitchhiker  0.00000898872  normal  0.027841 
 
 
-
 
NC_014148  Plim_1220  restriction modification system DNA specificity domain protein  27.63 
 
 
620 aa  80.5  0.00000000000004  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_0895  N-6 DNA methylase  29.57 
 
 
834 aa  80.9  0.00000000000004  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3607  restriction modification system, type I  23.99 
 
 
396 aa  80.9  0.00000000000004  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009707  JJD26997_1911  hypothetical protein  25.23 
 
 
453 aa  80.5  0.00000000000005  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.568524  n/a   
 
 
-
 
NC_009707  JJD26997_1851  type I restriction modification DNA specificity domain-containing protein  30 
 
 
194 aa  80.5  0.00000000000006  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_008573  Shewana3_4163  restriction modification system DNA specificity subunit  31.38 
 
 
405 aa  79.7  0.00000000000008  Shewanella sp. ANA-3  Bacteria  normal  0.864984  normal  0.0584456 
 
 
-
 
NC_008346  Swol_0515  type I restriction-modification system (specificity subunit)  25 
 
 
263 aa  78.2  0.0000000000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B4821  type I restriction-modification system, endonuclease S subunit  32.98 
 
 
382 aa  77.8  0.0000000000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4810  putative type I restriction-modification system specificity subunit  28.62 
 
 
360 aa  77.4  0.0000000000004  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0132  restriction modification system DNA specificity subunit  28.93 
 
 
427 aa  76.3  0.0000000000009  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.47299 
 
 
-
 
NC_009720  Xaut_1095  restriction modification system DNA specificity subunit  21.39 
 
 
450 aa  74.7  0.000000000003  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_17660  restriction endonuclease S subunit  28.21 
 
 
416 aa  73.9  0.000000000004  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2726  restriction modification system DNA specificity subunit  24.62 
 
 
500 aa  73.6  0.000000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0287  type I restriction modification DNA specificity domain-containing protein  27.27 
 
 
471 aa  73.2  0.000000000007  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0355  restriction modification system DNA specificity subunit  26.44 
 
 
590 aa  73.2  0.000000000007  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3953  restriction modification system DNA specificity domain protein  26.5 
 
 
413 aa  73.2  0.000000000008  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008761  Pnap_4778  restriction modification system DNA specificity subunit  27.59 
 
 
415 aa  73.2  0.000000000008  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.16943  normal 
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  23.25 
 
 
414 aa  72.4  0.00000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0804  restriction modification system DNA specificity subunit  25.22 
 
 
368 aa  72.8  0.00000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.526121  normal  0.427419 
 
 
-
 
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