144 homologs were found in PanDaTox collection
for query gene Shewana3_4163 on replicon NC_008573
Organism: Shewanella sp. ANA-3



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008573  Shewana3_4163  restriction modification system DNA specificity subunit  100 
 
 
405 aa  836    Shewanella sp. ANA-3  Bacteria  normal  0.864984  normal  0.0584456 
 
 
-
 
NC_009708  YpsIP31758_3537  putative type I restriction-modification system, S subunit  57.58 
 
 
419 aa  454  1.0000000000000001e-126  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2722  restriction modification system DNA specificity domain protein  44.57 
 
 
385 aa  297  3e-79  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_4083  restriction modification system DNA specificity subunit  41.49 
 
 
409 aa  263  3e-69  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009036  Sbal_4462  restriction modification system DNA specificity subunit  42.12 
 
 
349 aa  218  2e-55  Shewanella baltica OS155  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_3673  restriction modification system DNA specificity subunit  36.05 
 
 
410 aa  215  9.999999999999999e-55  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01116  hypothetical protein  34.25 
 
 
400 aa  177  2e-43  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013037  Dfer_5244  restriction modification system DNA specificity domain  30 
 
 
422 aa  168  2e-40  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_010655  Amuc_1914  restriction modification system DNA specificity domain  27.51 
 
 
386 aa  134  1.9999999999999998e-30  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  hitchhiker  0.00381757 
 
 
-
 
NC_010816  BLD_1960  restriction endonuclease S subunit  28.15 
 
 
413 aa  121  1.9999999999999998e-26  Bifidobacterium longum DJO10A  Bacteria  normal  0.323459  n/a   
 
 
-
 
NC_007955  Mbur_0508  restriction modification system DNA specificity subunit  40.43 
 
 
511 aa  119  7e-26  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_008532  STER_0750  restriction endonuclease S subunit  25.36 
 
 
387 aa  118  9.999999999999999e-26  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0132  restriction modification system DNA specificity subunit  25.7 
 
 
427 aa  118  1.9999999999999998e-25  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.47299 
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  29.61 
 
 
429 aa  118  1.9999999999999998e-25  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2724  restriction modification system DNA specificity domain protein  33 
 
 
409 aa  116  7.999999999999999e-25  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0871  restriction modification system DNA specificity subunit  36.67 
 
 
211 aa  114  2.0000000000000002e-24  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  25.9 
 
 
432 aa  114  2.0000000000000002e-24  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_011830  Dhaf_3953  restriction modification system DNA specificity domain protein  27.53 
 
 
413 aa  114  4.0000000000000004e-24  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2452  restriction modification system DNA specificity domain-containing protein  27.5 
 
 
419 aa  114  4.0000000000000004e-24  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.587532 
 
 
-
 
NC_010814  Glov_0637  restriction modification system DNA specificity domain  27.34 
 
 
422 aa  113  6e-24  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_20210  restriction modification system DNA specificity domain protein  38.17 
 
 
565 aa  111  2.0000000000000002e-23  Halothermothrix orenii H 168  Bacteria  normal  0.266778  n/a   
 
 
-
 
NC_003909  BCE_0842  type I restriction-modification enzyme, S subunit, putative  35.83 
 
 
476 aa  107  3e-22  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0448  restriction modification system DNA specificity domain  29.34 
 
 
435 aa  107  3e-22  Ralstonia pickettii 12J  Bacteria  normal  hitchhiker  0.00000159098 
 
 
-
 
NC_011061  Paes_2397  restriction modification system DNA specificity domain  30.39 
 
 
417 aa  105  1e-21  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000238697  n/a   
 
 
-
 
NC_013235  Namu_1103  restriction modification system DNA specificity domain protein  22.58 
 
 
400 aa  104  3e-21  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0442932  normal 
 
 
-
 
NC_009438  Sputcn32_2909  restriction modification system DNA specificity subunit  25.59 
 
 
440 aa  103  4e-21  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1859  restriction modification system DNA specificity subunit  27.04 
 
 
409 aa  97.4  4e-19  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.777891  n/a   
 
 
-
 
NC_009632  SaurJH1_1894  restriction modification system DNA specificity subunit  27.04 
 
 
409 aa  97.4  4e-19  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.850685  n/a   
 
 
-
 
NC_009707  JJD26997_1911  hypothetical protein  26.9 
 
 
453 aa  97.4  4e-19  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.568524  n/a   
 
 
-
 
NC_013411  GYMC61_0287  restriction modification system DNA specificity domain protein  31 
 
 
429 aa  96.3  1e-18  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008786  Veis_3129  restriction modification system DNA specificity subunit  26.85 
 
 
416 aa  94  4e-18  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.343622  normal  0.0250234 
 
 
-
 
NC_009720  Xaut_1095  restriction modification system DNA specificity subunit  35.11 
 
 
450 aa  94  5e-18  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_0287  type I restriction modification DNA specificity domain-containing protein  33.16 
 
 
471 aa  93.6  6e-18  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  23.21 
 
 
420 aa  91.3  3e-17  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3010  restriction modification system DNA specificity subunit  33.8 
 
 
549 aa  88.2  3e-16  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.340841  normal 
 
 
-
 
NC_007925  RPC_3653  type I restriction enzyme StySPI specificity protein  23.78 
 
 
460 aa  87.4  5e-16  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.234587  normal  0.701676 
 
 
-
 
NC_011830  Dhaf_3951  restriction modification system DNA specificity domain protein  26.16 
 
 
406 aa  86.7  7e-16  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0149  restriction modification system DNA specificity subunit  28.93 
 
 
400 aa  85.5  0.000000000000002  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3717  restriction modification system DNA specificity subunit  27.54 
 
 
427 aa  83.6  0.000000000000007  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  24.72 
 
 
456 aa  82.8  0.000000000000009  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_011060  Ppha_0745  restriction modification system DNA specificity domain  23.08 
 
 
411 aa  81.6  0.00000000000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.189202  n/a   
 
 
-
 
NC_011004  Rpal_1502  restriction modification system DNA specificity domain  28.96 
 
 
393 aa  80.5  0.00000000000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_1170  restriction modification system DNA specificity subunit  31.38 
 
 
402 aa  79.7  0.00000000000008  Methanococcus maripaludis C5  Archaea  normal  0.249165  n/a   
 
 
-
 
NC_007484  Noc_0446  restriction modification system DNA specificity subunit  23.06 
 
 
434 aa  79.7  0.00000000000009  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.0000807768  n/a   
 
 
-
 
NC_007908  Rfer_0030  restriction modification system DNA specificity subunit  22.47 
 
 
447 aa  79  0.0000000000001  Rhodoferax ferrireducens T118  Bacteria  normal  0.539395  n/a   
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  21.75 
 
 
426 aa  79.3  0.0000000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_007947  Mfla_1216  restriction modification system DNA specificity subunit  26.92 
 
 
427 aa  77.8  0.0000000000004  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3540  restriction modification system DNA specificity subunit  26.92 
 
 
387 aa  76.6  0.0000000000008  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1858  restriction modification system DNA specificity subunit  23.73 
 
 
456 aa  75.9  0.000000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_012039  Cla_0347  type I restriction-modification system, S subunit  30.46 
 
 
390 aa  76.3  0.000000000001  Campylobacter lari RM2100  Bacteria  hitchhiker  0.00000269296  n/a   
 
 
-
 
NC_009483  Gura_2097  restriction modification system DNA specificity subunit  26.97 
 
 
393 aa  73.6  0.000000000006  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1496  restriction modification system DNA specificity domain protein  24.13 
 
 
427 aa  73.6  0.000000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.136919  normal 
 
 
-
 
NC_007947  Mfla_1176  restriction modification system DNA specificity subunit  22.26 
 
 
408 aa  73.2  0.000000000007  Methylobacillus flagellatus KT  Bacteria  normal  0.882603  normal 
 
 
-
 
NC_011668  Sbal223_4454  restriction modification system DNA specificity domain protein  26.8 
 
 
406 aa  73.2  0.000000000008  Shewanella baltica OS223  Bacteria  normal  0.859615  normal 
 
 
-
 
NC_008043  TM1040_3550  restriction modification system DNA specificity subunit  28.4 
 
 
417 aa  72.8  0.00000000001  Ruegeria sp. TM1040  Bacteria  normal  0.257959  normal  0.256697 
 
 
-
 
NC_009715  CCV52592_1061  putative type I restriction-modification system, S subunit  29.33 
 
 
528 aa  72.4  0.00000000001  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  24.82 
 
 
457 aa  72.8  0.00000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  23.02 
 
 
409 aa  72.8  0.00000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_008639  Cpha266_0895  N-6 DNA methylase  30.34 
 
 
834 aa  71.6  0.00000000002  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  26.47 
 
 
424 aa  71.6  0.00000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_010717  PXO_02063  type I restriction-modification system, S subunit  26.42 
 
 
501 aa  72  0.00000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  22.2 
 
 
438 aa  71.2  0.00000000003  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_013595  Sros_7555  Restriction endonuclease S subunits-like protein  20.5 
 
 
402 aa  70.5  0.00000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_003912  CJE1195  type II restriction-modification enzyme  38.54 
 
 
1343 aa  69.3  0.0000000001  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3075  restriction modification system DNA specificity domain protein  22.43 
 
 
388 aa  68.9  0.0000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.40504  normal 
 
 
-
 
NC_011761  AFE_0686  type I restriction-modification system, S subunit, putative  30 
 
 
561 aa  68.6  0.0000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.840975  n/a   
 
 
-
 
NC_011206  Lferr_0835  restriction modification system DNA specificity domain  30 
 
 
563 aa  68.6  0.0000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.835919  normal  0.945638 
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  23.94 
 
 
413 aa  67.8  0.0000000003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_010506  Swoo_0501  restriction modification system DNA specificity subunit  34.26 
 
 
612 aa  67.4  0.0000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.435558 
 
 
-
 
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  30.43 
 
 
616 aa  67  0.0000000006  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0504  restriction modification system DNA specificity domain protein  29.19 
 
 
408 aa  66.6  0.0000000007  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0959  restriction modification system DNA specificity domain protein  23.75 
 
 
442 aa  66.6  0.0000000007  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1566  restriction modification system DNA specificity subunit  25.48 
 
 
403 aa  66.2  0.000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0293394  unclonable  0.0000192379 
 
 
-
 
NC_013170  Ccur_03130  hypothetical protein  28.78 
 
 
208 aa  65.9  0.000000001  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.0551237  hitchhiker  0.00000000000000986658 
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  25.97 
 
 
414 aa  65.1  0.000000002  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1307  restriction modification system DNA specificity subunit  23.51 
 
 
285 aa  64.7  0.000000003  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.186237 
 
 
-
 
NC_009483  Gura_4042  restriction modification system DNA specificity subunit  25.91 
 
 
428 aa  64.3  0.000000004  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1060  restriction modification system DNA specificity subunit  26.44 
 
 
397 aa  62.4  0.00000001  Rhodoferax ferrireducens T118  Bacteria  normal  0.588803  n/a   
 
 
-
 
NC_011729  PCC7424_2086  restriction modification system DNA specificity domain protein  29.68 
 
 
417 aa  62.8  0.00000001  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000683293 
 
 
-
 
NC_010581  Bind_2673  restriction modification system DNA specificity subunit  34.09 
 
 
415 aa  62.8  0.00000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.574489 
 
 
-
 
NC_011149  SeAg_B4821  type I restriction-modification system, endonuclease S subunit  25.43 
 
 
382 aa  62.4  0.00000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4252  restriction modification system DNA specificity domain protein  29.73 
 
 
462 aa  61.6  0.00000002  Dickeya zeae Ech1591  Bacteria  normal  0.132013  n/a   
 
 
-
 
NC_014148  Plim_1220  restriction modification system DNA specificity domain protein  23.6 
 
 
620 aa  62  0.00000002  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1027  restriction modification system DNA specificity subunit  28.32 
 
 
420 aa  61.6  0.00000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1954  restriction modification system DNA specificity subunit  29.68 
 
 
406 aa  61.6  0.00000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0382  type I restriction-modification system, S subunit  22.93 
 
 
439 aa  60.1  0.00000006  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007519  Dde_3425  restriction endonuclease S subunits-like  29.51 
 
 
390 aa  59.3  0.0000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.835151  n/a   
 
 
-
 
NC_007575  Suden_0944  restriction modification system DNA specificity subunit  25.52 
 
 
420 aa  58.2  0.0000002  Sulfurimonas denitrificans DSM 1251  Bacteria  hitchhiker  0.00000962716  n/a   
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  41.18 
 
 
477 aa  58.9  0.0000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008786  Veis_3549  restriction modification system DNA specificity subunit  24.42 
 
 
296 aa  58.9  0.0000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.348533  normal 
 
 
-
 
NC_009939  Dgeo_3109  restriction modification system DNA specificity subunit  23.21 
 
 
426 aa  58.5  0.0000002  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_008740  Maqu_0414  restriction modification system DNA specificity subunit  24.58 
 
 
439 aa  57.4  0.0000005  Marinobacter aquaeolei VT8  Bacteria  normal  0.405933  n/a   
 
 
-
 
NC_011761  AFE_2378  type I restriction-modification system, S subunit  21.61 
 
 
383 aa  56.6  0.0000007  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3793  restriction modification system DNA specificity subunit  25.13 
 
 
425 aa  56.6  0.0000008  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1778  type I restriction-modification system specificity subunit  22.25 
 
 
419 aa  56.6  0.0000008  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.926504  n/a   
 
 
-
 
NC_011206  Lferr_2009  restriction modification system DNA specificity domain  21.61 
 
 
423 aa  56.6  0.0000008  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.999718  normal  0.91224 
 
 
-
 
NC_011901  Tgr7_0599  type I restriction-modification system, S subunit  28.18 
 
 
458 aa  56.2  0.000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3199  restriction modification system DNA specificity subunit  32.59 
 
 
400 aa  56.2  0.000001  Marinomonas sp. MWYL1  Bacteria  normal  0.365834  normal 
 
 
-
 
NC_013730  Slin_3089  restriction modification system DNA specificity domain protein  33.02 
 
 
520 aa  55.1  0.000002  Spirosoma linguale DSM 74  Bacteria  normal  0.497517  normal  0.376247 
 
 
-
 
NC_013161  Cyan8802_0727  restriction modification system DNA specificity domain protein  23.68 
 
 
400 aa  55.1  0.000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0968972 
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>