Gene Plim_1220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_1220 
Symbol 
ID9137913 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand
Start bp1559863 
End bp1561725 
Gene Length1863 bp 
Protein Length620 aa 
Translation table11 
GC content47% 
IMG OID 
Productrestriction modification system DNA specificity domain protein 
Protein accessionYP_003629254 
Protein GI296121476 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATATGC CTCCAAATGG CTGGACGACA GACGCCCTTA GCAATCTAGT GACTTTCAAG 
ACGGGCAAGC TGAATTCAAA TGCTGCTGTA TCAAACGGTG CATATCCCTT TTTTACATGC
TCGCAAGAGA CGCTTCGCAC AAACACTTTT GCCTTCGATA CAGAATGTGT GTTACTCGCC
GGAAACAATG CCAACGGCAT ATATCCACTA AAGTATTTTC ACGGACGATT TGACGCGTAT
CAACGCACGT ATGTTGTTAC GCCACAAGAT TGCACGCGAC TCAACACGCG TTTCCTTTAC
TACTCTATGT GGCCCTTGCT TGAACATTTG CAAAGTATAT CCACAGGTGC CGCAACCAAG
TTCTTGACTT TAACAATTTT GAACGGTTTA CAGTTGACAT TTCCATCCGA GCCAGTCCAA
CGCAAAATTG CGGGGATTCT TTCGGCGTAT GATGATCTGA TTGAGAACAA CACCCGGCGA
ATTGCCATTC TGGAAGAGAT GGCCCAGGCC ATTTACCGGG AATGGTTCGT CCACTTCCGC
TTCCCAGGCC ACGAAAACAC CCTGCTCGTC GATTCCCCAC TCGGCAAAAT CCCTGAGGGT
TGGCAGGTTA AACGATTGGA TTCAATTTGC GAAAGAATTA CTAGCGGAGG GACACCAAGA
ACTAATGTCA ATGAATACTG GGATGGTGAT ATTCCGTGGC TATCATCCGG CGAAACCGGA
AACACCTTTA TTACAGAGAC TGAAAAGAAA ATCACACAGG AGGGCGTGAC TAATTCAAGT
ACCCGTTTTG CACGATCTGG CTGCACTGTT ATTGCAAGTG CGGGCCAAGG CAAGACTCGT
GGCCAAACGT CGATGCTTTG CCTAGATTGC TACATCAATC AGTCAACAAT TGCTGTAACG
GCTGATGGTA AGCAAACTAC TGATAGTTTT TTATTTTTTG ATTTAGTGCA AAGGTATGAC
CAGTTCCGGC AGATCTCTGA CGGTAGCTCT CGTGGAAGTC TGACAACAAA ATTGATAGCG
GATCTTGAAA TTATTCTTCC GCAACCATTT TTAATTCAGA AGTTTGACGT TCTTACAACC
CCCGTAGTAA AGCACATTGA AAATATCCTT AGAAAAAACA AAATCCTTCG CAAAACCCGT
GACCTCTTAC TTCCCAAACT CATCAGCGGT GAACTGGATG TTGAGTCTCT GGAAATCGAT
TTTGATGAAC CGACCTTTCA ACAGCCGGAA GTAGAAAAAG TTATCCAACC GCCAAAGCCG
CAAATTGTTT CATCTCCGAC TGCCGAAACA GGTACACCTT ACAAAGACGA TGCGGCGATT
CTGTGCTTGT TACTGCAAGA GCTTCTTCAT CTGGCACCAG ATAGACCAAA CAACGAGTTT
GTCATTCAGA AGCACATGTT CGGCCTGAAA CATCTCCGCA GGCATGCCAT CAATTCAAAA
TTTGTCGCCC AGAAGGCTGG CCCCTGGTCA CAGGAACTTC GCCATAAAGC GGTCTTTGCC
GCCGCTGGCT TTGATTGGTT GCGATTTGAT AATCAGGGGA AAATTCTGCT TCCCGGTCGG
AAATTCACAA AAGGTGTTGA ATACGCAAAA TCTCTTCTGG GAGAGAAAGC AGCCCTTGTG
ACGGAGTTCG TGCAGGATCT CTCCAAATTC GGGAAGAGTG GCCTGGGGAA ATGGATGACC
ATTTTTAAGG TCGTCTGTGA TCTTCACGAC GCTGGCCAAC CCATCACGCG GCAGAATATC
CAAACTGGAA TCGACAACTG GCCCGGGAAG CGAGACAAAA ACAATTTCTC TGTTGAGAAT
GTGGACGACA CGATTTCAAA GATGGTGCGT CAGAAGTGGT TCACGTTGCA GGCAGGATCG
TAG
 
Protein sequence
MNMPPNGWTT DALSNLVTFK TGKLNSNAAV SNGAYPFFTC SQETLRTNTF AFDTECVLLA 
GNNANGIYPL KYFHGRFDAY QRTYVVTPQD CTRLNTRFLY YSMWPLLEHL QSISTGAATK
FLTLTILNGL QLTFPSEPVQ RKIAGILSAY DDLIENNTRR IAILEEMAQA IYREWFVHFR
FPGHENTLLV DSPLGKIPEG WQVKRLDSIC ERITSGGTPR TNVNEYWDGD IPWLSSGETG
NTFITETEKK ITQEGVTNSS TRFARSGCTV IASAGQGKTR GQTSMLCLDC YINQSTIAVT
ADGKQTTDSF LFFDLVQRYD QFRQISDGSS RGSLTTKLIA DLEIILPQPF LIQKFDVLTT
PVVKHIENIL RKNKILRKTR DLLLPKLISG ELDVESLEID FDEPTFQQPE VEKVIQPPKP
QIVSSPTAET GTPYKDDAAI LCLLLQELLH LAPDRPNNEF VIQKHMFGLK HLRRHAINSK
FVAQKAGPWS QELRHKAVFA AAGFDWLRFD NQGKILLPGR KFTKGVEYAK SLLGEKAALV
TEFVQDLSKF GKSGLGKWMT IFKVVCDLHD AGQPITRQNI QTGIDNWPGK RDKNNFSVEN
VDDTISKMVR QKWFTLQAGS