173 homologs were found in PanDaTox collection
for query gene Plim_1220 on replicon NC_014148
Organism: Planctomyces limnophilus DSM 3776



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014148  Plim_1220  restriction modification system DNA specificity domain protein  100 
 
 
620 aa  1288    Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1307  restriction modification system DNA specificity subunit  42.71 
 
 
285 aa  220  6e-56  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.186237 
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  52.63 
 
 
432 aa  184  5.0000000000000004e-45  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_011662  Tmz1t_0005  restriction modification system DNA specificity domain protein  35.54 
 
 
378 aa  164  6e-39  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A2665  type I restriction-modification system specificity subunit  35.14 
 
 
446 aa  161  3e-38  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0650221  normal  0.332066 
 
 
-
 
NC_009943  Dole_2237  restriction modification system DNA specificity subunit  35.91 
 
 
412 aa  160  9e-38  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  33.89 
 
 
414 aa  159  1e-37  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_2467  restriction modification system DNA specificity domain  33.43 
 
 
438 aa  157  6e-37  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3129  restriction modification system DNA specificity subunit  32.04 
 
 
416 aa  150  5e-35  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.343622  normal  0.0250234 
 
 
-
 
NC_008786  Veis_3010  restriction modification system DNA specificity subunit  34.23 
 
 
549 aa  149  1.0000000000000001e-34  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.340841  normal 
 
 
-
 
NC_007520  Tcr_0333  restriction modification system DNA specificity subunit  30.15 
 
 
371 aa  143  9e-33  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  32.54 
 
 
420 aa  138  4e-31  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  30.69 
 
 
456 aa  133  9e-30  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_007969  Pcryo_2364  restriction modification system DNA specificity subunit  33.33 
 
 
413 aa  130  6e-29  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.188022 
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  29.47 
 
 
457 aa  130  9.000000000000001e-29  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_3499  restriction modification system DNA specificity subunit  31.55 
 
 
405 aa  128  3e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.082109 
 
 
-
 
NC_013946  Mrub_2452  restriction modification system DNA specificity domain-containing protein  30.58 
 
 
419 aa  117  6.9999999999999995e-25  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.587532 
 
 
-
 
NC_011060  Ppha_1219  restriction modification system DNA specificity domain  27.62 
 
 
412 aa  113  8.000000000000001e-24  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0448  restriction modification system DNA specificity domain  29.77 
 
 
435 aa  113  9e-24  Ralstonia pickettii 12J  Bacteria  normal  hitchhiker  0.00000159098 
 
 
-
 
NC_007514  Cag_1526  restriction endonuclease S subunits-like  36.69 
 
 
386 aa  111  3e-23  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003235  type I restriction-modification system specificity subunit S  28.62 
 
 
437 aa  110  6e-23  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0030  restriction modification system DNA specificity subunit  27.17 
 
 
447 aa  109  1e-22  Rhodoferax ferrireducens T118  Bacteria  normal  0.539395  n/a   
 
 
-
 
NC_013411  GYMC61_0287  restriction modification system DNA specificity domain protein  26.81 
 
 
429 aa  108  3e-22  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008009  Acid345_3757  restriction modification system S subunit  27.75 
 
 
436 aa  107  9e-22  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.386531  normal 
 
 
-
 
NC_007760  Adeh_2328  type I restriction-modification system specificity subunit  26.82 
 
 
404 aa  105  2e-21  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0041  restriction modification system DNA specificity subunit  27.23 
 
 
397 aa  105  2e-21  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_009052  Sbal_4348  restriction modification system DNA specificity subunit  29.58 
 
 
363 aa  105  4e-21  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4252  restriction modification system DNA specificity domain protein  32.67 
 
 
462 aa  103  7e-21  Dickeya zeae Ech1591  Bacteria  normal  0.132013  n/a   
 
 
-
 
NC_009438  Sputcn32_2909  restriction modification system DNA specificity subunit  27.39 
 
 
440 aa  103  9e-21  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0637  restriction modification system DNA specificity domain  24.45 
 
 
422 aa  102  2e-20  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  27.63 
 
 
424 aa  101  4e-20  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_010513  Xfasm12_2285  hypothetical protein  29.31 
 
 
425 aa  101  4e-20  Xylella fastidiosa M12  Bacteria  normal  0.0313194  n/a   
 
 
-
 
NC_010803  Clim_0128  N-6 DNA methylase  35.67 
 
 
846 aa  95.9  2e-18  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_0023  type I restriction-modification system specificity subunit  38.52 
 
 
411 aa  95.1  3e-18  Mycobacterium sp. MCS  Bacteria  normal  0.834107  n/a   
 
 
-
 
NC_008705  Mkms_0031  type I restriction-modification system specificity subunit  38.52 
 
 
411 aa  95.1  3e-18  Mycobacterium sp. KMS  Bacteria  normal  0.404176  normal  0.032892 
 
 
-
 
NC_009974  Haur_5276  restriction modification system DNA specificity subunit  33.33 
 
 
418 aa  95.1  4e-18  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_0878  type I restriction modification system methylase  26.87 
 
 
424 aa  93.6  9e-18  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.707045 
 
 
-
 
NC_011662  Tmz1t_3599  restriction modification system DNA specificity domain protein  30.87 
 
 
532 aa  92.8  2e-17  Thauera sp. MZ1T  Bacteria  normal  0.743632  n/a   
 
 
-
 
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  32.76 
 
 
616 aa  92.8  2e-17  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1095  hypothetical protein  25.98 
 
 
401 aa  92  3e-17  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012793  GWCH70_1643  restriction modification system DNA specificity domain protein  26.75 
 
 
428 aa  91.3  5e-17  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2726  restriction modification system DNA specificity subunit  22.47 
 
 
500 aa  89.7  1e-16  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1954  restriction modification system DNA specificity subunit  28.57 
 
 
406 aa  89.4  2e-16  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3144  restriction modification system DNA specificity domain protein  25.47 
 
 
412 aa  89.7  2e-16  Cyanothece sp. PCC 7425  Bacteria  normal  0.527027  normal 
 
 
-
 
NC_013730  Slin_3089  restriction modification system DNA specificity domain protein  29.37 
 
 
520 aa  87.4  6e-16  Spirosoma linguale DSM 74  Bacteria  normal  0.497517  normal  0.376247 
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  21.76 
 
 
429 aa  87.4  6e-16  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0193  type I restriction-modification system specificity determinant  25.45 
 
 
416 aa  86.3  0.000000000000002  Frankia sp. CcI3  Bacteria  normal  normal  0.311495 
 
 
-
 
NC_011901  Tgr7_0599  type I restriction-modification system, S subunit  24.7 
 
 
458 aa  86.3  0.000000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008573  Shewana3_4241  restriction modification system DNA specificity subunit  25.66 
 
 
411 aa  85.1  0.000000000000004  Shewanella sp. ANA-3  Bacteria  normal  0.491612  hitchhiker  0.00127278 
 
 
-
 
NC_009801  EcE24377A_0287  type I restriction modification DNA specificity domain-containing protein  25.99 
 
 
471 aa  85.1  0.000000000000004  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_1218  restriction modification system DNA specificity subunit  25.13 
 
 
351 aa  84.7  0.000000000000005  Methanococcoides burtonii DSM 6242  Archaea  normal  0.67755  n/a   
 
 
-
 
NC_011761  AFE_2791  type I restriction-modification system, S subunit  29.94 
 
 
418 aa  83.2  0.00000000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3297  restriction modification system DNA specificity subunit  27.35 
 
 
430 aa  83.2  0.00000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000489204 
 
 
-
 
NC_013595  Sros_7555  Restriction endonuclease S subunits-like protein  28.87 
 
 
402 aa  83.2  0.00000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1176  restriction modification system DNA specificity subunit  24.32 
 
 
408 aa  83.2  0.00000000000001  Methylobacillus flagellatus KT  Bacteria  normal  0.882603  normal 
 
 
-
 
NC_011206  Lferr_2415  restriction modification system DNA specificity domain  29.94 
 
 
418 aa  83.2  0.00000000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.589349  normal  0.260014 
 
 
-
 
NC_008322  Shewmr7_1783  restriction modification system DNA specificity subunit  27.11 
 
 
448 aa  82.4  0.00000000000002  Shewanella sp. MR-7  Bacteria  normal  normal  0.311566 
 
 
-
 
NC_009049  Rsph17029_1858  restriction modification system DNA specificity subunit  25.32 
 
 
456 aa  81.6  0.00000000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A0223  putative HsdS protein  25.75 
 
 
438 aa  81.3  0.00000000000005  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0549  restriction modification system DNA specificity subunit  24.88 
 
 
385 aa  81.3  0.00000000000005  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0414  restriction modification system DNA specificity subunit  23.9 
 
 
439 aa  80.5  0.00000000000007  Marinobacter aquaeolei VT8  Bacteria  normal  0.405933  n/a   
 
 
-
 
NC_009135  MmarC5_1170  restriction modification system DNA specificity subunit  27.63 
 
 
402 aa  80.9  0.00000000000007  Methanococcus maripaludis C5  Archaea  normal  0.249165  n/a   
 
 
-
 
NC_009483  Gura_1027  restriction modification system DNA specificity subunit  26.4 
 
 
420 aa  80.9  0.00000000000007  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  22.08 
 
 
438 aa  79.7  0.0000000000001  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_002977  MCA0836  type I restriction-modification system S subunit  25.14 
 
 
416 aa  79  0.0000000000003  Methylococcus capsulatus str. Bath  Bacteria  normal  0.444813  n/a   
 
 
-
 
NC_011729  PCC7424_2086  restriction modification system DNA specificity domain protein  31.52 
 
 
417 aa  78.6  0.0000000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000683293 
 
 
-
 
NC_008740  Maqu_3382  restriction modification system DNA specificity subunit  23.77 
 
 
485 aa  77.8  0.0000000000005  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1195  type II restriction-modification enzyme  29.38 
 
 
1343 aa  77  0.0000000000008  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  27.36 
 
 
477 aa  77  0.0000000000008  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_1103  restriction modification system DNA specificity domain protein  25.57 
 
 
400 aa  77.4  0.0000000000008  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0442932  normal 
 
 
-
 
NC_007948  Bpro_1941  restriction endonuclease S subunits-like  25.71 
 
 
451 aa  76.6  0.000000000001  Polaromonas sp. JS666  Bacteria  normal  0.0182546  normal  0.0682578 
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  24.81 
 
 
425 aa  75.5  0.000000000003  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  28.09 
 
 
422 aa  75.1  0.000000000004  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_011668  Sbal223_4472  restriction modification system DNA specificity domain protein  24 
 
 
428 aa  74.3  0.000000000007  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3550  restriction modification system DNA specificity subunit  25.19 
 
 
417 aa  73.9  0.000000000009  Ruegeria sp. TM1040  Bacteria  normal  0.257959  normal  0.256697 
 
 
-
 
NC_009707  JJD26997_1911  hypothetical protein  23.05 
 
 
453 aa  73.9  0.000000000009  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.568524  n/a   
 
 
-
 
NC_012669  Bcav_0504  restriction modification system DNA specificity domain protein  24.3 
 
 
408 aa  73.6  0.00000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_1122  restriction endonuclease S subunits-like  24.7 
 
 
428 aa  73.2  0.00000000001  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.878738  n/a   
 
 
-
 
NC_009483  Gura_4042  restriction modification system DNA specificity subunit  28.47 
 
 
428 aa  73.2  0.00000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0959  restriction modification system DNA specificity domain protein  24.54 
 
 
442 aa  72.8  0.00000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  24.22 
 
 
426 aa  72.4  0.00000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_007925  RPC_3653  type I restriction enzyme StySPI specificity protein  24.19 
 
 
460 aa  71.6  0.00000000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.234587  normal  0.701676 
 
 
-
 
NC_009634  Mevan_0264  restriction modification system DNA specificity subunit  26.97 
 
 
407 aa  71.2  0.00000000005  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  25 
 
 
413 aa  71.2  0.00000000005  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_009483  Gura_2097  restriction modification system DNA specificity subunit  27.81 
 
 
393 aa  70.5  0.00000000009  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2722  restriction modification system DNA specificity domain protein  24.51 
 
 
385 aa  69.3  0.0000000002  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1360  restriction modification system DNA specificity subunit  24.65 
 
 
453 aa  68.9  0.0000000002  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.502069 
 
 
-
 
NC_008825  Mpe_A0006  restriction modification system, type I  24.78 
 
 
412 aa  69.3  0.0000000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  29.24 
 
 
409 aa  68.9  0.0000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_008025  Dgeo_2016  restriction modification system DNA specificity subunit  24.5 
 
 
417 aa  67.8  0.0000000005  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0839323  normal 
 
 
-
 
NC_008576  Mmc1_0132  restriction modification system DNA specificity subunit  25 
 
 
427 aa  68.2  0.0000000005  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.47299 
 
 
-
 
NC_008577  Shewana3_3793  restriction modification system DNA specificity subunit  23.81 
 
 
425 aa  67.8  0.0000000005  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1566  restriction modification system DNA specificity subunit  25.52 
 
 
403 aa  67.8  0.0000000005  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0293394  unclonable  0.0000192379 
 
 
-
 
NC_008761  Pnap_4778  restriction modification system DNA specificity subunit  24.23 
 
 
415 aa  67.8  0.0000000006  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.16943  normal 
 
 
-
 
NC_008786  Veis_2423  restriction modification system DNA specificity subunit  29.63 
 
 
426 aa  66.6  0.000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.57431  normal 
 
 
-
 
NC_008043  TM1040_3540  restriction modification system DNA specificity subunit  28.57 
 
 
387 aa  65.9  0.000000002  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0564  restriction modification system DNA specificity subunit  25.64 
 
 
415 aa  65.9  0.000000002  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00017151  decreased coverage  6.20122e-17 
 
 
-
 
NC_007484  Noc_2904  restriction modification system DNA specificity subunit  21.23 
 
 
425 aa  64.3  0.000000006  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2391  restriction modification system DNA specificity subunit  21.77 
 
 
374 aa  64.3  0.000000006  Marinobacter aquaeolei VT8  Bacteria  normal  0.164769  n/a   
 
 
-
 
NC_011899  Hore_20210  restriction modification system DNA specificity domain protein  28.41 
 
 
565 aa  63.9  0.000000007  Halothermothrix orenii H 168  Bacteria  normal  0.266778  n/a   
 
 
-
 
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