172 homologs were found in PanDaTox collection
for query gene Psyc_0878 on replicon NC_007204
Organism: Psychrobacter arcticus 273-4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007204  Psyc_0878  type I restriction modification system methylase  100 
 
 
424 aa  872    Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.707045 
 
 
-
 
NC_007969  Pcryo_1360  restriction modification system DNA specificity subunit  40.75 
 
 
453 aa  296  4e-79  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.502069 
 
 
-
 
NC_007948  Bpro_1941  restriction endonuclease S subunits-like  28.18 
 
 
451 aa  176  9e-43  Polaromonas sp. JS666  Bacteria  normal  0.0182546  normal  0.0682578 
 
 
-
 
NC_009438  Sputcn32_2909  restriction modification system DNA specificity subunit  27.46 
 
 
440 aa  174  2.9999999999999996e-42  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3010  restriction modification system DNA specificity subunit  30.94 
 
 
549 aa  160  3e-38  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.340841  normal 
 
 
-
 
NC_013946  Mrub_2452  restriction modification system DNA specificity domain-containing protein  28.98 
 
 
419 aa  148  2.0000000000000003e-34  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.587532 
 
 
-
 
NC_007955  Mbur_1218  restriction modification system DNA specificity subunit  48.19 
 
 
351 aa  148  2.0000000000000003e-34  Methanococcoides burtonii DSM 6242  Archaea  normal  0.67755  n/a   
 
 
-
 
NC_008740  Maqu_3382  restriction modification system DNA specificity subunit  28.53 
 
 
485 aa  144  4e-33  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3757  restriction modification system S subunit  28.14 
 
 
436 aa  142  9.999999999999999e-33  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.386531  normal 
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  26.54 
 
 
420 aa  141  1.9999999999999998e-32  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA0836  type I restriction-modification system S subunit  28.44 
 
 
416 aa  139  7e-32  Methylococcus capsulatus str. Bath  Bacteria  normal  0.444813  n/a   
 
 
-
 
NC_008573  Shewana3_4241  restriction modification system DNA specificity subunit  26.85 
 
 
411 aa  139  8.999999999999999e-32  Shewanella sp. ANA-3  Bacteria  normal  0.491612  hitchhiker  0.00127278 
 
 
-
 
NC_008025  Dgeo_2016  restriction modification system DNA specificity subunit  30.57 
 
 
417 aa  133  6.999999999999999e-30  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0839323  normal 
 
 
-
 
NC_011831  Cagg_3297  restriction modification system DNA specificity subunit  28.21 
 
 
430 aa  129  1.0000000000000001e-28  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000489204 
 
 
-
 
NC_008825  Mpe_A0006  restriction modification system, type I  26.68 
 
 
412 aa  128  2.0000000000000002e-28  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_008761  Pnap_4778  restriction modification system DNA specificity subunit  30.97 
 
 
415 aa  126  8.000000000000001e-28  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.16943  normal 
 
 
-
 
NC_013411  GYMC61_0287  restriction modification system DNA specificity domain protein  27.67 
 
 
429 aa  123  5e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008786  Veis_3129  restriction modification system DNA specificity subunit  26.64 
 
 
416 aa  122  9.999999999999999e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.343622  normal  0.0250234 
 
 
-
 
NC_007908  Rfer_0030  restriction modification system DNA specificity subunit  30.21 
 
 
447 aa  122  1.9999999999999998e-26  Rhodoferax ferrireducens T118  Bacteria  normal  0.539395  n/a   
 
 
-
 
NC_007484  Noc_1808  restriction modification system DNA specificity subunit  28.2 
 
 
483 aa  120  3.9999999999999996e-26  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.300643  n/a   
 
 
-
 
NC_010803  Clim_2467  restriction modification system DNA specificity domain  22.35 
 
 
438 aa  117  3e-25  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A3272  type I restriction-modification system specificity subunit  34.55 
 
 
492 aa  116  6e-25  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.425878  normal  0.243207 
 
 
-
 
NC_012793  GWCH70_1643  restriction modification system DNA specificity domain protein  25.38 
 
 
428 aa  115  1.0000000000000001e-24  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0223  putative HsdS protein  28.07 
 
 
438 aa  115  2.0000000000000002e-24  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_2791  type I restriction-modification system, S subunit  28.54 
 
 
418 aa  115  2.0000000000000002e-24  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2415  restriction modification system DNA specificity domain  28.54 
 
 
418 aa  115  2.0000000000000002e-24  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.589349  normal  0.260014 
 
 
-
 
NC_010831  Cphamn1_0334  restriction modification system DNA specificity domain  27.05 
 
 
430 aa  112  1.0000000000000001e-23  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.284396 
 
 
-
 
NC_009801  EcE24377A_0287  type I restriction modification DNA specificity domain-containing protein  24.62 
 
 
471 aa  112  2.0000000000000002e-23  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2742  type I restriction-modification system specificity determinant  26.46 
 
 
398 aa  110  4.0000000000000004e-23  Burkholderia thailandensis E264  Bacteria  normal  0.971087  n/a   
 
 
-
 
NC_004578  PSPTO_1087  type I restriction-modification system, S subunit  27.21 
 
 
422 aa  109  1e-22  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.247708  n/a   
 
 
-
 
NC_014165  Tbis_2508  restriction modification system DNA specificity domain-containing protein  32.16 
 
 
401 aa  107  3e-22  Thermobispora bispora DSM 43833  Bacteria  normal  0.39699  normal  0.700746 
 
 
-
 
NC_011668  Sbal223_4472  restriction modification system DNA specificity domain protein  28.57 
 
 
428 aa  105  1e-21  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_0637  restriction modification system DNA specificity domain  23.58 
 
 
422 aa  103  4e-21  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  25.66 
 
 
432 aa  104  4e-21  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_011884  Cyan7425_3144  restriction modification system DNA specificity domain protein  24.5 
 
 
412 aa  103  7e-21  Cyanothece sp. PCC 7425  Bacteria  normal  0.527027  normal 
 
 
-
 
NC_009943  Dole_2237  restriction modification system DNA specificity subunit  35 
 
 
412 aa  102  1e-20  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0041  restriction modification system DNA specificity subunit  26.22 
 
 
397 aa  101  3e-20  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3793  restriction modification system DNA specificity subunit  32.8 
 
 
425 aa  100  5e-20  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010513  Xfasm12_2285  hypothetical protein  24.55 
 
 
425 aa  97.8  3e-19  Xylella fastidiosa M12  Bacteria  normal  0.0313194  n/a   
 
 
-
 
NC_011662  Tmz1t_0005  restriction modification system DNA specificity domain protein  24.79 
 
 
378 aa  97.1  6e-19  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12774  type I restriction/modification system specificity determinant hsdS  38.62 
 
 
364 aa  96.3  1e-18  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3499  restriction modification system DNA specificity subunit  26.02 
 
 
405 aa  94  4e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.082109 
 
 
-
 
NC_013161  Cyan8802_0727  restriction modification system DNA specificity domain protein  29.84 
 
 
400 aa  94  5e-18  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0968972 
 
 
-
 
NC_014148  Plim_1220  restriction modification system DNA specificity domain protein  26.87 
 
 
620 aa  94  5e-18  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A2665  type I restriction-modification system specificity subunit  22.99 
 
 
446 aa  93.6  6e-18  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0650221  normal  0.332066 
 
 
-
 
NC_007760  Adeh_2328  type I restriction-modification system specificity subunit  22.43 
 
 
404 aa  92.8  1e-17  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  21.39 
 
 
414 aa  90.1  7e-17  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0501  restriction modification system DNA specificity subunit  31.1 
 
 
612 aa  90.1  7e-17  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.435558 
 
 
-
 
NC_011206  Lferr_0835  restriction modification system DNA specificity domain  32.64 
 
 
563 aa  88.6  2e-16  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.835919  normal  0.945638 
 
 
-
 
NC_011761  AFE_0686  type I restriction-modification system, S subunit, putative  32.64 
 
 
561 aa  88.6  2e-16  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.840975  n/a   
 
 
-
 
NC_011773  BCAH820_0845  restriction modification system DNA specificity domain protein  22.79 
 
 
495 aa  87.8  3e-16  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.31571e-19 
 
 
-
 
NC_013889  TK90_1635  restriction modification system DNA specificity domain protein  28.37 
 
 
419 aa  87.4  4e-16  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0235263  normal 
 
 
-
 
NC_007969  Pcryo_2364  restriction modification system DNA specificity subunit  24.45 
 
 
413 aa  86.3  0.000000000000001  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.188022 
 
 
-
 
NC_013595  Sros_7555  Restriction endonuclease S subunits-like protein  26.06 
 
 
402 aa  85.9  0.000000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_2910  putative type I restriction-modification system, S subunit  26.23 
 
 
373 aa  84.7  0.000000000000003  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_1122  restriction endonuclease S subunits-like  23.62 
 
 
428 aa  83.2  0.000000000000008  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.878738  n/a   
 
 
-
 
NC_007298  Daro_1307  restriction modification system DNA specificity subunit  24.61 
 
 
285 aa  81.3  0.00000000000003  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.186237 
 
 
-
 
NC_009943  Dole_0277  restriction modification system DNA specificity subunit  29.69 
 
 
413 aa  80.1  0.00000000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0333  restriction modification system DNA specificity subunit  35.42 
 
 
371 aa  79.7  0.00000000000009  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0403  restriction modification system DNA specificity subunit  24.59 
 
 
402 aa  79.7  0.00000000000009  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3199  restriction modification system DNA specificity subunit  27.03 
 
 
400 aa  78.6  0.0000000000002  Marinomonas sp. MWYL1  Bacteria  normal  0.365834  normal 
 
 
-
 
NC_013174  Jden_2249  restriction modification system DNA specificity domain protein  30.72 
 
 
384 aa  77.8  0.0000000000003  Jonesia denitrificans DSM 20603  Bacteria  normal  0.153937  normal 
 
 
-
 
NC_004347  SO_0382  type I restriction-modification system, S subunit  30 
 
 
439 aa  77.8  0.0000000000004  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011060  Ppha_1219  restriction modification system DNA specificity domain  23.92 
 
 
412 aa  75.9  0.000000000001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_4007  restriction endonuclease S subunits-like  29.85 
 
 
412 aa  76.3  0.000000000001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_4348  restriction modification system DNA specificity subunit  26.69 
 
 
363 aa  75.9  0.000000000001  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_0023  type I restriction-modification system specificity subunit  26.44 
 
 
411 aa  74.7  0.000000000003  Mycobacterium sp. MCS  Bacteria  normal  0.834107  n/a   
 
 
-
 
NC_008705  Mkms_0031  type I restriction-modification system specificity subunit  26.44 
 
 
411 aa  74.7  0.000000000003  Mycobacterium sp. KMS  Bacteria  normal  0.404176  normal  0.032892 
 
 
-
 
NC_009665  Shew185_2194  restriction modification system DNA specificity subunit  25.48 
 
 
427 aa  75.1  0.000000000003  Shewanella baltica OS185  Bacteria  normal  0.122675  n/a   
 
 
-
 
NC_009715  CCV52592_1061  putative type I restriction-modification system, S subunit  24.65 
 
 
528 aa  73.6  0.000000000006  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0347  type I restriction-modification system, S subunit  28.11 
 
 
390 aa  72  0.00000000002  Campylobacter lari RM2100  Bacteria  hitchhiker  0.00000269296  n/a   
 
 
-
 
NC_013235  Namu_1103  restriction modification system DNA specificity domain protein  28.35 
 
 
400 aa  70.9  0.00000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0442932  normal 
 
 
-
 
NC_012669  Bcav_3914  Restriction endonuclease S subunit  30.54 
 
 
405 aa  70.9  0.00000000005  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009513  Lreu_0873  restriction modification system DNA specificity subunit  30.06 
 
 
375 aa  70.1  0.00000000007  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1201  restriction modification system DNA specificity domain protein  26.86 
 
 
572 aa  68.9  0.0000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1158  restriction modification system DNA specificity subunit  22.09 
 
 
454 aa  68.2  0.0000000003  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000117149  normal 
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  27.01 
 
 
425 aa  67.8  0.0000000003  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_007404  Tbd_2682  putative restriction endonuclease S subunit  29.17 
 
 
400 aa  65.9  0.000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.845062  normal 
 
 
-
 
NC_007575  Suden_0944  restriction modification system DNA specificity subunit  26.49 
 
 
420 aa  65.9  0.000000001  Sulfurimonas denitrificans DSM 1251  Bacteria  hitchhiker  0.00000962716  n/a   
 
 
-
 
NC_008255  CHU_3352  type I site-specific deoxyribonuclease S subunit  29.47 
 
 
303 aa  65.9  0.000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  decreased coverage  0.0000513186  normal  0.0100815 
 
 
-
 
NC_008787  CJJ81176_1536  hypothetical protein  32.37 
 
 
380 aa  66.2  0.000000001  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  hitchhiker  0.00344436  n/a   
 
 
-
 
NC_011060  Ppha_0745  restriction modification system DNA specificity domain  29.85 
 
 
411 aa  64.3  0.000000004  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.189202  n/a   
 
 
-
 
NC_014210  Ndas_3081  restriction modification system DNA specificity domain protein  29.45 
 
 
415 aa  64.3  0.000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.758933 
 
 
-
 
NC_009523  RoseRS_0735  restriction modification system DNA specificity subunit  29.69 
 
 
392 aa  64.3  0.000000004  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.142305 
 
 
-
 
NC_009708  YpsIP31758_3537  putative type I restriction-modification system, S subunit  25.4 
 
 
419 aa  63.2  0.000000009  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_0035  hypothetical protein  23.88 
 
 
400 aa  62.8  0.00000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.89444 
 
 
-
 
NC_008346  Swol_2257  restriction endonuclease S subunits-like protein  22.58 
 
 
413 aa  62.4  0.00000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1778  type I restriction-modification system specificity subunit  29.94 
 
 
419 aa  61.2  0.00000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.926504  n/a   
 
 
-
 
NC_009338  Mflv_0804  restriction modification system DNA specificity subunit  33.94 
 
 
368 aa  61.2  0.00000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.526121  normal  0.427419 
 
 
-
 
NC_007406  Nwi_1253  Type I restriction enzyme EcoAI specificity protein  26.26 
 
 
597 aa  60.5  0.00000005  Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  0.00376854  normal 
 
 
-
 
NC_008255  CHU_3351  type I site-specific deoxyribonuclease S subunit  30.57 
 
 
354 aa  60.8  0.00000005  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00146581  normal  0.0102246 
 
 
-
 
NC_009483  Gura_0549  restriction modification system DNA specificity subunit  23.18 
 
 
385 aa  60.5  0.00000005  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_4472  restriction modification system DNA specificity subunit  28.9 
 
 
415 aa  60.5  0.00000006  Trichodesmium erythraeum IMS101  Bacteria  normal  0.270866  normal  0.0902542 
 
 
-
 
NC_011832  Mpal_1094  restriction modification system DNA specificity domain protein  25.82 
 
 
205 aa  60.1  0.00000007  Methanosphaerula palustris E1-9c  Archaea  normal  0.0782363  normal  0.473834 
 
 
-
 
NC_013522  Taci_1544  restriction modification system DNA specificity domain protein  25 
 
 
374 aa  60.1  0.00000007  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1032  restriction modification system DNA specificity subunit  27.32 
 
 
457 aa  60.1  0.00000007  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.41908  normal  0.322454 
 
 
-
 
NC_008312  Tery_2421  restriction modification system DNA specificity subunit  26.44 
 
 
402 aa  59.7  0.00000008  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.318068 
 
 
-
 
NC_007406  Nwi_0268  restriction endonuclease S subunits  25 
 
 
444 aa  59.7  0.00000009  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.277222  normal 
 
 
-
 
NC_012917  PC1_2875  restriction modification system DNA specificity domain protein  28.87 
 
 
390 aa  59.7  0.00000009  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1091  restriction modification system DNA specificity domain protein  22.16 
 
 
444 aa  57.8  0.0000003  Rhodothermus marinus DSM 4252  Bacteria  normal  0.17387  n/a   
 
 
-
 
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