165 homologs were found in PanDaTox collection
for query gene Daro_1307 on replicon NC_007298
Organism: Dechloromonas aromatica RCB



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007298  Daro_1307  restriction modification system DNA specificity subunit  100 
 
 
285 aa  585  1e-166  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.186237 
 
 
-
 
NC_014148  Plim_1220  restriction modification system DNA specificity domain protein  42.71 
 
 
620 aa  220  1.9999999999999999e-56  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0005  restriction modification system DNA specificity domain protein  45.61 
 
 
378 aa  203  3e-51  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  35.16 
 
 
420 aa  163  3e-39  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A2665  type I restriction-modification system specificity subunit  36.2 
 
 
446 aa  161  9e-39  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0650221  normal  0.332066 
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  34.47 
 
 
432 aa  157  2e-37  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_008786  Veis_3129  restriction modification system DNA specificity subunit  34.04 
 
 
416 aa  154  2e-36  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.343622  normal  0.0250234 
 
 
-
 
NC_013411  GYMC61_0287  restriction modification system DNA specificity domain protein  33.8 
 
 
429 aa  150  2e-35  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011060  Ppha_1219  restriction modification system DNA specificity domain  35.04 
 
 
412 aa  149  6e-35  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3010  restriction modification system DNA specificity subunit  31.15 
 
 
549 aa  145  7.0000000000000006e-34  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.340841  normal 
 
 
-
 
NC_013946  Mrub_2452  restriction modification system DNA specificity domain-containing protein  29.76 
 
 
419 aa  131  1.0000000000000001e-29  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.587532 
 
 
-
 
NC_009943  Dole_2237  restriction modification system DNA specificity subunit  33.7 
 
 
412 aa  131  1.0000000000000001e-29  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  31.54 
 
 
414 aa  131  2.0000000000000002e-29  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  32.91 
 
 
457 aa  129  8.000000000000001e-29  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010814  Glov_0637  restriction modification system DNA specificity domain  29.15 
 
 
422 aa  127  2.0000000000000002e-28  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_2467  restriction modification system DNA specificity domain  33.22 
 
 
438 aa  127  3e-28  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_2364  restriction modification system DNA specificity subunit  31.8 
 
 
413 aa  126  5e-28  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.188022 
 
 
-
 
NC_013456  VEA_003235  type I restriction-modification system specificity subunit S  26.99 
 
 
437 aa  118  9.999999999999999e-26  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2328  type I restriction-modification system specificity subunit  30.86 
 
 
404 aa  114  2.0000000000000002e-24  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  30.59 
 
 
456 aa  110  2.0000000000000002e-23  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_009801  EcE24377A_0287  type I restriction modification DNA specificity domain-containing protein  25.07 
 
 
471 aa  110  2.0000000000000002e-23  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_1170  restriction modification system DNA specificity subunit  38 
 
 
402 aa  110  3e-23  Methanococcus maripaludis C5  Archaea  normal  0.249165  n/a   
 
 
-
 
NC_012793  GWCH70_1643  restriction modification system DNA specificity domain protein  28.96 
 
 
428 aa  109  5e-23  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3089  restriction modification system DNA specificity domain protein  40 
 
 
520 aa  108  7.000000000000001e-23  Spirosoma linguale DSM 74  Bacteria  normal  0.497517  normal  0.376247 
 
 
-
 
NC_009438  Sputcn32_2909  restriction modification system DNA specificity subunit  26.3 
 
 
440 aa  107  2e-22  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3499  restriction modification system DNA specificity subunit  30.88 
 
 
405 aa  105  6e-22  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.082109 
 
 
-
 
NC_007520  Tcr_0333  restriction modification system DNA specificity subunit  31.12 
 
 
371 aa  102  1e-20  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_4348  restriction modification system DNA specificity subunit  30.08 
 
 
363 aa  101  1e-20  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1060  restriction modification system DNA specificity subunit  33.33 
 
 
397 aa  100  2e-20  Rhodoferax ferrireducens T118  Bacteria  normal  0.588803  n/a   
 
 
-
 
NC_011729  PCC7424_2086  restriction modification system DNA specificity domain protein  31.09 
 
 
417 aa  100  3e-20  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000683293 
 
 
-
 
NC_007908  Rfer_0030  restriction modification system DNA specificity subunit  27.59 
 
 
447 aa  99.8  4e-20  Rhodoferax ferrireducens T118  Bacteria  normal  0.539395  n/a   
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  31.22 
 
 
477 aa  97.1  3e-19  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009975  MmarC6_0041  restriction modification system DNA specificity subunit  29.15 
 
 
397 aa  96.3  6e-19  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_010682  Rpic_0448  restriction modification system DNA specificity domain  26.48 
 
 
435 aa  95.9  7e-19  Ralstonia pickettii 12J  Bacteria  normal  hitchhiker  0.00000159098 
 
 
-
 
NC_008146  Mmcs_0023  type I restriction-modification system specificity subunit  29.81 
 
 
411 aa  95.5  8e-19  Mycobacterium sp. MCS  Bacteria  normal  0.834107  n/a   
 
 
-
 
NC_008705  Mkms_0031  type I restriction-modification system specificity subunit  29.81 
 
 
411 aa  95.5  8e-19  Mycobacterium sp. KMS  Bacteria  normal  0.404176  normal  0.032892 
 
 
-
 
NC_011886  Achl_1095  hypothetical protein  27.18 
 
 
401 aa  94  3e-18  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009483  Gura_1027  restriction modification system DNA specificity subunit  30.34 
 
 
420 aa  93.2  4e-18  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA0836  type I restriction-modification system S subunit  28.23 
 
 
416 aa  91.7  1e-17  Methylococcus capsulatus str. Bath  Bacteria  normal  0.444813  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  24.45 
 
 
425 aa  92  1e-17  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  28.33 
 
 
422 aa  90.5  3e-17  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  23.53 
 
 
424 aa  89.7  5e-17  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  30.53 
 
 
616 aa  87.8  2e-16  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4252  restriction modification system DNA specificity domain protein  32.47 
 
 
462 aa  87.4  3e-16  Dickeya zeae Ech1591  Bacteria  normal  0.132013  n/a   
 
 
-
 
NC_008761  Pnap_4778  restriction modification system DNA specificity subunit  25.86 
 
 
415 aa  87.4  3e-16  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.16943  normal 
 
 
-
 
NC_009049  Rsph17029_1858  restriction modification system DNA specificity subunit  23.53 
 
 
456 aa  87  3e-16  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3144  restriction modification system DNA specificity domain protein  25.86 
 
 
412 aa  86.7  4e-16  Cyanothece sp. PCC 7425  Bacteria  normal  0.527027  normal 
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  28.21 
 
 
438 aa  86.7  4e-16  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_003912  CJE1195  type II restriction-modification enzyme  31.76 
 
 
1343 aa  85.1  0.000000000000001  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3297  restriction modification system DNA specificity subunit  27.48 
 
 
430 aa  84.3  0.000000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000489204 
 
 
-
 
NC_007925  RPC_3653  type I restriction enzyme StySPI specificity protein  31.79 
 
 
460 aa  82.4  0.000000000000008  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.234587  normal  0.701676 
 
 
-
 
NC_011668  Sbal223_4472  restriction modification system DNA specificity domain protein  24.74 
 
 
428 aa  82  0.00000000000001  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_0878  type I restriction modification system methylase  24.61 
 
 
424 aa  81.3  0.00000000000002  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.707045 
 
 
-
 
NC_008573  Shewana3_4241  restriction modification system DNA specificity subunit  26.62 
 
 
411 aa  81.3  0.00000000000002  Shewanella sp. ANA-3  Bacteria  normal  0.491612  hitchhiker  0.00127278 
 
 
-
 
NC_008786  Veis_1566  restriction modification system DNA specificity subunit  27.72 
 
 
403 aa  81.3  0.00000000000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0293394  unclonable  0.0000192379 
 
 
-
 
NC_012669  Bcav_1496  restriction modification system DNA specificity domain protein  26.85 
 
 
427 aa  80.5  0.00000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.136919  normal 
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  25.8 
 
 
429 aa  80.1  0.00000000000003  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  27.76 
 
 
413 aa  79.7  0.00000000000005  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_009939  Dgeo_3109  restriction modification system DNA specificity subunit  26.52 
 
 
426 aa  79.7  0.00000000000005  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_007777  Francci3_0193  type I restriction-modification system specificity determinant  24.83 
 
 
416 aa  79  0.00000000000008  Frankia sp. CcI3  Bacteria  normal  normal  0.311495 
 
 
-
 
NC_008709  Ping_0149  restriction modification system DNA specificity subunit  24.65 
 
 
400 aa  78.2  0.0000000000002  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0959  restriction modification system DNA specificity domain protein  27.04 
 
 
442 aa  77  0.0000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0842  type I restriction-modification enzyme, S subunit, putative  26.57 
 
 
476 aa  77  0.0000000000004  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_20210  restriction modification system DNA specificity domain protein  29.61 
 
 
565 aa  76.3  0.0000000000005  Halothermothrix orenii H 168  Bacteria  normal  0.266778  n/a   
 
 
-
 
NC_011761  AFE_2791  type I restriction-modification system, S subunit  26.22 
 
 
418 aa  75.9  0.0000000000007  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2415  restriction modification system DNA specificity domain  26.22 
 
 
418 aa  75.9  0.0000000000007  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.589349  normal  0.260014 
 
 
-
 
NC_008009  Acid345_3757  restriction modification system S subunit  25.5 
 
 
436 aa  73.9  0.000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.386531  normal 
 
 
-
 
NC_010803  Clim_0128  N-6 DNA methylase  30.72 
 
 
846 aa  73.9  0.000000000003  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2978  restriction modification system DNA specificity domain protein  30.46 
 
 
194 aa  73.6  0.000000000004  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009513  Lreu_0871  restriction modification system DNA specificity subunit  29.71 
 
 
211 aa  73.6  0.000000000004  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_011061  Paes_2397  restriction modification system DNA specificity domain  28.64 
 
 
417 aa  73.2  0.000000000005  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000238697  n/a   
 
 
-
 
NC_007951  Bxe_A0223  putative HsdS protein  26.4 
 
 
438 aa  73.2  0.000000000005  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_2673  restriction modification system DNA specificity subunit  30.13 
 
 
415 aa  72.8  0.000000000007  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.574489 
 
 
-
 
NC_013235  Namu_1103  restriction modification system DNA specificity domain protein  24.53 
 
 
400 aa  71.6  0.00000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0442932  normal 
 
 
-
 
NC_010513  Xfasm12_2285  hypothetical protein  25.31 
 
 
425 aa  72  0.00000000001  Xylella fastidiosa M12  Bacteria  normal  0.0313194  n/a   
 
 
-
 
NC_009974  Haur_5276  restriction modification system DNA specificity subunit  31.39 
 
 
418 aa  72  0.00000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3550  restriction modification system DNA specificity subunit  24.26 
 
 
417 aa  70.5  0.00000000003  Ruegeria sp. TM1040  Bacteria  normal  0.257959  normal  0.256697 
 
 
-
 
NC_007413  Ava_3267  restriction modification system DNA specificity subunit  30.52 
 
 
557 aa  70.1  0.00000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0920403  decreased coverage  0.00535253 
 
 
-
 
NC_008025  Dgeo_2016  restriction modification system DNA specificity subunit  23.47 
 
 
417 aa  70.1  0.00000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0839323  normal 
 
 
-
 
NC_009943  Dole_2726  restriction modification system DNA specificity subunit  25.86 
 
 
500 aa  69.3  0.00000000007  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1176  restriction modification system DNA specificity subunit  23.91 
 
 
408 aa  68.2  0.0000000001  Methylobacillus flagellatus KT  Bacteria  normal  0.882603  normal 
 
 
-
 
NC_008345  Sfri_1954  restriction modification system DNA specificity subunit  26.82 
 
 
406 aa  67.8  0.0000000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2097  restriction modification system DNA specificity subunit  27.12 
 
 
393 aa  67.8  0.0000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1064  type I restriction-modification  24.08 
 
 
453 aa  66.6  0.0000000005  Synechococcus elongatus PCC 7942  Bacteria  hitchhiker  0.00000898872  normal  0.027841 
 
 
-
 
NC_007519  Dde_3425  restriction endonuclease S subunits-like  24.34 
 
 
390 aa  66.2  0.0000000006  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.835151  n/a   
 
 
-
 
NC_012669  Bcav_0504  restriction modification system DNA specificity domain protein  31.61 
 
 
408 aa  65.9  0.0000000007  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0487  restriction modification system DNA specificity subunit  23.57 
 
 
438 aa  65.9  0.0000000007  Desulfovibrio vulgaris DP4  Bacteria  normal  0.700794  normal  0.0187002 
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  26.49 
 
 
409 aa  64.7  0.000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  26.49 
 
 
426 aa  65.1  0.000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_008573  Shewana3_4163  restriction modification system DNA specificity subunit  23.51 
 
 
405 aa  64.7  0.000000002  Shewanella sp. ANA-3  Bacteria  normal  0.864984  normal  0.0584456 
 
 
-
 
NC_008740  Maqu_0414  restriction modification system DNA specificity subunit  24.09 
 
 
439 aa  64.3  0.000000002  Marinobacter aquaeolei VT8  Bacteria  normal  0.405933  n/a   
 
 
-
 
NC_009483  Gura_0549  restriction modification system DNA specificity subunit  27.44 
 
 
385 aa  64.3  0.000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2722  restriction modification system DNA specificity domain protein  23.05 
 
 
385 aa  63.9  0.000000003  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2391  restriction modification system DNA specificity subunit  25.95 
 
 
374 aa  63.5  0.000000003  Marinobacter aquaeolei VT8  Bacteria  normal  0.164769  n/a   
 
 
-
 
NC_009707  JJD26997_1911  hypothetical protein  24.3 
 
 
453 aa  63.9  0.000000003  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.568524  n/a   
 
 
-
 
NC_004578  PSPTO_1087  type I restriction-modification system, S subunit  21.91 
 
 
422 aa  63.5  0.000000004  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.247708  n/a   
 
 
-
 
NC_013595  Sros_7555  Restriction endonuclease S subunits-like protein  23.55 
 
 
402 aa  63.2  0.000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4821  type I restriction-modification system, endonuclease S subunit  28.37 
 
 
382 aa  62.8  0.000000006  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1808  restriction modification system DNA specificity subunit  23.95 
 
 
483 aa  62.4  0.000000009  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.300643  n/a   
 
 
-
 
NC_008787  CJJ81176_1536  hypothetical protein  23.43 
 
 
380 aa  61.6  0.00000001  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  hitchhiker  0.00344436  n/a   
 
 
-
 
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