Gene TM1040_3550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3550 
Symbol 
ID4075226 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp593428 
End bp594681 
Gene Length1254 bp 
Protein Length417 aa 
Translation table11 
GC content53% 
IMG OID638005062 
Productrestriction modification system DNA specificity subunit 
Protein accessionYP_611781 
Protein GI99078523 
COG category[V] Defense mechanisms 
COG ID[COG0732] Restriction endonuclease S subunits 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.257959 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.256697 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGCCG TGTCGAAGGC AAGCGCTTTT CCTGCAACTG TCCAGCCCGG AATACCGAAA 
CTCGGGAAGA CGCCAGAAGG GTGGTTACGC GCTCCATTGT CCCGCTTTCT TGTGGAAGTG
CGCAGGCCTA TCAAGATGGC TGACAATGAG GCCTATCGTT TGGTGACGGT CAAACGTGCT
CGTGGCGGTG TGGTTGAGCG CGGGACGCTG GATGGCAGAG AAATCTCAGT CAAGTCGCAA
TTCATCGTTG AAGGCGGTGA TTTCCTGATC TCCAAGCGTC AGATCGTTCA CGGGGCCTGC
GGACTGGTGC CTCAAGAGCT GGCCGGTTCT GTCGTTTCCA ACGAGTACTC GGTTTTGAAC
AGCAACGGAA ACATTGACCT TCAGTTCTTG AACTACCTCG CGCACACGGT GTTCTTTCAA
CAGACCTGTT TCCATTCAAG CATTGGCGTC CATGTCGAGA AAATGATTTT CAAGCTCGAC
CGTTGGCTCA AGTGGGAGTT TGATCTGCCC CCACTCTCTG AGCAACGCAA GATCGTGGAG
ATCCTGTCGA CCTGGGACCG GGCGATTGAG GTAGCCGAGG CGCAGCTGGC CAATGCCCGC
AAACAGAAAC GCGCCCTCAT GCAGTCCCTG CTGACTGGCA AACGCCGCTT CCCAGAGTTT
GAGGGACAGG AGTGGCGTGA AGTGTGGTTG GCGGACCTGG TTTCGGCCAT TCGAGGAGGA
GGAACACCAG ACAAGAGTAA CACCGCATAT TGGGGAGGAG AGATTCCTTG GGTGAGCGTC
AAGGACCTCA AATCTGATGT TCTTCAGCAG ACTAAAGACA CGATCACTCA ATCAGGCTTG
AACAGCAGTG CAGCCAATTA CTTCCCTAAG GGCACTATTG TTGTCGCTAC GAGAATGGCA
GTTGGCGCTG CCGTTCAACT GGGCAAAGGG ATGGCTATCA ACCAGGACTT GAAGGCGATC
ATCCCCGGGC CAGATGTCCG GAACGATTAT CTTTTCCACT TCATGCAAAT GGTACAGCCA
AAGTTGGAAG CTCTCGGCAC TGGAAGTACA GTCAAAGGCA TCACTTTGGG TGATCTGCAT
CGCCTTGTCA TTGGGCTTCC CGCGACCTTG GAGGAACAAG ACAAGATCGT TCAAATGCTT
GATGTCGCCA GGAAAGATAT CTCGTCTATG TGTGTAAATA TTGGAAAGCT CCGTGCCGAG
AAGAAAGCGT TGATGCAACA GCTCCTGACT GGAAAACGCC GGGTCACAGG TTGA
 
Protein sequence
MNAVSKASAF PATVQPGIPK LGKTPEGWLR APLSRFLVEV RRPIKMADNE AYRLVTVKRA 
RGGVVERGTL DGREISVKSQ FIVEGGDFLI SKRQIVHGAC GLVPQELAGS VVSNEYSVLN
SNGNIDLQFL NYLAHTVFFQ QTCFHSSIGV HVEKMIFKLD RWLKWEFDLP PLSEQRKIVE
ILSTWDRAIE VAEAQLANAR KQKRALMQSL LTGKRRFPEF EGQEWREVWL ADLVSAIRGG
GTPDKSNTAY WGGEIPWVSV KDLKSDVLQQ TKDTITQSGL NSSAANYFPK GTIVVATRMA
VGAAVQLGKG MAINQDLKAI IPGPDVRNDY LFHFMQMVQP KLEALGTGST VKGITLGDLH
RLVIGLPATL EEQDKIVQML DVARKDISSM CVNIGKLRAE KKALMQQLLT GKRRVTG