214 homologs were found in PanDaTox collection
for query gene Fnod_0507 on replicon NC_009718
Organism: Fervidobacterium nodosum Rt17-B1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  100 
 
 
429 aa  873    Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1071  restriction modification system DNA specificity subunit  41.23 
 
 
429 aa  195  1e-48  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_2548  restriction modification system DNA specificity domain  44.13 
 
 
405 aa  178  2e-43  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3550  restriction modification system DNA specificity subunit  30.66 
 
 
417 aa  171  3e-41  Ruegeria sp. TM1040  Bacteria  normal  0.257959  normal  0.256697 
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  36.92 
 
 
424 aa  170  4e-41  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  33.75 
 
 
425 aa  149  1.0000000000000001e-34  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  32.17 
 
 
432 aa  140  3.9999999999999997e-32  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  28.18 
 
 
422 aa  137  3.0000000000000003e-31  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  31.37 
 
 
426 aa  135  1.9999999999999998e-30  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_009801  EcE24377A_0287  type I restriction modification DNA specificity domain-containing protein  29.38 
 
 
471 aa  134  1.9999999999999998e-30  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0287  restriction modification system DNA specificity domain protein  31.31 
 
 
429 aa  134  3.9999999999999996e-30  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011899  Hore_20210  restriction modification system DNA specificity domain protein  44.12 
 
 
565 aa  133  5e-30  Halothermothrix orenii H 168  Bacteria  normal  0.266778  n/a   
 
 
-
 
NC_008576  Mmc1_0132  restriction modification system DNA specificity subunit  29.71 
 
 
427 aa  130  5.0000000000000004e-29  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.47299 
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  27.11 
 
 
456 aa  129  1.0000000000000001e-28  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_007955  Mbur_0508  restriction modification system DNA specificity subunit  35.32 
 
 
511 aa  128  2.0000000000000002e-28  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_011899  Hore_04450  restriction modification system DNA specificity domain protein  32.22 
 
 
422 aa  127  4.0000000000000003e-28  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3793  restriction modification system DNA specificity subunit  31.72 
 
 
425 aa  125  1e-27  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_2722  restriction modification system DNA specificity domain protein  29.55 
 
 
385 aa  125  2e-27  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2909  restriction modification system DNA specificity subunit  28.01 
 
 
440 aa  124  3e-27  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1911  hypothetical protein  30.19 
 
 
453 aa  123  6e-27  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.568524  n/a   
 
 
-
 
NC_004347  SO_0382  type I restriction-modification system, S subunit  30.9 
 
 
439 aa  122  9.999999999999999e-27  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_1805  restriction modification system DNA specificity domain protein  26.07 
 
 
423 aa  122  1.9999999999999998e-26  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.745604  normal  0.535567 
 
 
-
 
NC_013440  Hoch_2792  restriction modification system DNA specificity domain protein  27.05 
 
 
423 aa  121  3e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  0.313089  normal 
 
 
-
 
NC_013946  Mrub_2452  restriction modification system DNA specificity domain-containing protein  28.66 
 
 
419 aa  120  3.9999999999999996e-26  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.587532 
 
 
-
 
NC_008346  Swol_2257  restriction endonuclease S subunits-like protein  31.85 
 
 
413 aa  120  4.9999999999999996e-26  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  32.04 
 
 
409 aa  119  7e-26  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  30.07 
 
 
438 aa  119  9e-26  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_003909  BCE_0842  type I restriction-modification enzyme, S subunit, putative  32.57 
 
 
476 aa  118  1.9999999999999998e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1091  restriction modification system DNA specificity domain protein  28.34 
 
 
444 aa  118  1.9999999999999998e-25  Rhodothermus marinus DSM 4252  Bacteria  normal  0.17387  n/a   
 
 
-
 
NC_009513  Lreu_0871  restriction modification system DNA specificity subunit  40.22 
 
 
211 aa  118  1.9999999999999998e-25  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_008573  Shewana3_4163  restriction modification system DNA specificity subunit  29.61 
 
 
405 aa  118  3e-25  Shewanella sp. ANA-3  Bacteria  normal  0.864984  normal  0.0584456 
 
 
-
 
NC_008740  Maqu_2391  restriction modification system DNA specificity subunit  29.24 
 
 
374 aa  117  3e-25  Marinobacter aquaeolei VT8  Bacteria  normal  0.164769  n/a   
 
 
-
 
NC_010682  Rpic_0448  restriction modification system DNA specificity domain  26.74 
 
 
435 aa  117  3.9999999999999997e-25  Ralstonia pickettii 12J  Bacteria  normal  hitchhiker  0.00000159098 
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  27.69 
 
 
457 aa  116  6e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007644  Moth_1671  restriction modification system DNA specificity subunit  28.09 
 
 
442 aa  116  6.9999999999999995e-25  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.517259  hitchhiker  0.00037426 
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  27.94 
 
 
413 aa  115  2.0000000000000002e-24  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_008786  Veis_3010  restriction modification system DNA specificity subunit  24.85 
 
 
549 aa  114  4.0000000000000004e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.340841  normal 
 
 
-
 
NC_010581  Bind_2673  restriction modification system DNA specificity subunit  33.82 
 
 
415 aa  113  6e-24  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.574489 
 
 
-
 
NC_008786  Veis_3129  restriction modification system DNA specificity subunit  24.92 
 
 
416 aa  112  2.0000000000000002e-23  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.343622  normal  0.0250234 
 
 
-
 
NC_009483  Gura_4042  restriction modification system DNA specificity subunit  31.58 
 
 
428 aa  112  2.0000000000000002e-23  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2598  type I restriction-modification enzyme, S subunit  27.56 
 
 
417 aa  110  5e-23  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0133376  n/a   
 
 
-
 
NC_002976  SERP2471  type I restriction-modification system S subunit  26.59 
 
 
381 aa  110  6e-23  Staphylococcus epidermidis RP62A  Bacteria  decreased coverage  0.0091078  n/a   
 
 
-
 
NC_007908  Rfer_0030  restriction modification system DNA specificity subunit  29.18 
 
 
447 aa  109  8.000000000000001e-23  Rhodoferax ferrireducens T118  Bacteria  normal  0.539395  n/a   
 
 
-
 
NC_010003  Pmob_1897  restriction modification system DNA specificity subunit  30.96 
 
 
433 aa  108  2e-22  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0637  restriction modification system DNA specificity domain  28.94 
 
 
422 aa  106  7e-22  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009939  Dgeo_3109  restriction modification system DNA specificity subunit  25.08 
 
 
426 aa  104  3e-21  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_1103  restriction modification system DNA specificity domain protein  24.64 
 
 
400 aa  103  6e-21  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0442932  normal 
 
 
-
 
NC_009135  MmarC5_1170  restriction modification system DNA specificity subunit  31.66 
 
 
402 aa  103  6e-21  Methanococcus maripaludis C5  Archaea  normal  0.249165  n/a   
 
 
-
 
NC_009076  BURPS1106A_0098  restriction endonuclease S subunits  29.75 
 
 
315 aa  103  8e-21  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2904  restriction modification system DNA specificity subunit  32.34 
 
 
425 aa  102  1e-20  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1858  restriction modification system DNA specificity subunit  24.68 
 
 
456 aa  102  1e-20  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05614  type I restriction-modification system S subunit  26.78 
 
 
432 aa  102  2e-20  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009720  Xaut_1095  restriction modification system DNA specificity subunit  34.22 
 
 
450 aa  101  2e-20  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010730  SYO3AOP1_0387  restriction modification system DNA specificity domain  29.12 
 
 
435 aa  101  2e-20  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0681662  n/a   
 
 
-
 
NC_013158  Huta_0102  restriction modification system DNA specificity domain protein  26 
 
 
442 aa  100  4e-20  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0334  restriction modification system DNA specificity domain  26.42 
 
 
430 aa  99  1e-19  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.284396 
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  26.18 
 
 
420 aa  99  1e-19  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3075  restriction modification system DNA specificity domain protein  25.24 
 
 
388 aa  97.4  5e-19  Cyanothece sp. PCC 7425  Bacteria  normal  0.40504  normal 
 
 
-
 
NC_008639  Cpha266_0895  N-6 DNA methylase  34.15 
 
 
834 aa  95.5  2e-18  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011061  Paes_2397  restriction modification system DNA specificity domain  29.17 
 
 
417 aa  94.4  3e-18  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000238697  n/a   
 
 
-
 
NC_008786  Veis_1566  restriction modification system DNA specificity subunit  25.45 
 
 
403 aa  94.4  4e-18  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0293394  unclonable  0.0000192379 
 
 
-
 
NC_013093  Amir_0959  restriction modification system DNA specificity domain protein  25.57 
 
 
442 aa  92.4  1e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3425  restriction endonuclease S subunits-like  26.18 
 
 
390 aa  92  2e-17  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.835151  n/a   
 
 
-
 
NC_013456  VEA_003235  type I restriction-modification system specificity subunit S  23.13 
 
 
437 aa  91.7  2e-17  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  29.05 
 
 
477 aa  90.9  4e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_4083  restriction modification system DNA specificity subunit  23.94 
 
 
409 aa  89.4  1e-16  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1176  restriction modification system DNA specificity subunit  23.38 
 
 
408 aa  89.4  1e-16  Methylobacillus flagellatus KT  Bacteria  normal  0.882603  normal 
 
 
-
 
NC_011898  Ccel_2724  restriction modification system DNA specificity domain protein  27.66 
 
 
409 aa  88.6  2e-16  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0500  restriction modification system DNA specificity subunit  28.16 
 
 
413 aa  89  2e-16  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.565018  normal 
 
 
-
 
NC_014148  Plim_1220  restriction modification system DNA specificity domain protein  21.76 
 
 
620 aa  87.8  4e-16  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  28.8 
 
 
414 aa  87.4  4e-16  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0951  restriction modification system DNA specificity subunit  25.06 
 
 
419 aa  87  6e-16  Psychrobacter cryohalolentis K5  Bacteria  normal  unclonable  0.0000406123 
 
 
-
 
NC_008740  Maqu_0414  restriction modification system DNA specificity subunit  23.93 
 
 
439 aa  87  6e-16  Marinobacter aquaeolei VT8  Bacteria  normal  0.405933  n/a   
 
 
-
 
NC_008751  Dvul_0487  restriction modification system DNA specificity subunit  26.69 
 
 
438 aa  86.7  8e-16  Desulfovibrio vulgaris DP4  Bacteria  normal  0.700794  normal  0.0187002 
 
 
-
 
NC_011726  PCC8801_2978  restriction modification system DNA specificity domain protein  29.32 
 
 
194 aa  85.5  0.000000000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009504  BOV_A0789  type I restriction-modification system, S subunit  25.58 
 
 
407 aa  85.1  0.000000000000002  Brucella ovis ATCC 25840  Bacteria  normal  0.190219  n/a   
 
 
-
 
NC_004311  BRA0841  type I restriction-modification system, S subunit  25.58 
 
 
407 aa  84.3  0.000000000000003  Brucella suis 1330  Bacteria  normal  0.629279  n/a   
 
 
-
 
NC_004578  PSPTO_0006  type I restriction-modification system, S subunit, EcoA family  24.3 
 
 
435 aa  84.7  0.000000000000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1496  restriction modification system DNA specificity domain protein  24.13 
 
 
427 aa  84.3  0.000000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.136919  normal 
 
 
-
 
NC_011901  Tgr7_0599  type I restriction-modification system, S subunit  25.94 
 
 
458 aa  84  0.000000000000005  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2689  restriction modification system DNA specificity subunit  28.16 
 
 
290 aa  83.2  0.000000000000009  Roseiflexus sp. RS-1  Bacteria  normal  0.841682  normal 
 
 
-
 
NC_013595  Sros_7555  Restriction endonuclease S subunits-like protein  29.56 
 
 
402 aa  82.4  0.00000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3540  restriction modification system DNA specificity subunit  29.81 
 
 
387 aa  82  0.00000000000002  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1307  restriction modification system DNA specificity subunit  25.8 
 
 
285 aa  80.1  0.00000000000006  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.186237 
 
 
-
 
NC_007406  Nwi_0268  restriction endonuclease S subunits  37.34 
 
 
444 aa  80.1  0.00000000000007  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.277222  normal 
 
 
-
 
NC_011149  SeAg_B4821  type I restriction-modification system, endonuclease S subunit  23.04 
 
 
382 aa  80.1  0.00000000000007  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2097  restriction modification system DNA specificity subunit  27.66 
 
 
393 aa  79.3  0.0000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0504  restriction modification system DNA specificity domain protein  26.6 
 
 
408 aa  79  0.0000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2926  restriction modification system DNA specificity subunit  28.81 
 
 
434 aa  77.8  0.0000000000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1095  hypothetical protein  22.74 
 
 
401 aa  76.6  0.0000000000007  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008599  CFF8240_0988  type I restriction-modification system, S subunit  25.75 
 
 
401 aa  76.6  0.0000000000008  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.271922  n/a   
 
 
-
 
NC_007413  Ava_1158  restriction modification system DNA specificity subunit  23.23 
 
 
454 aa  76.6  0.0000000000009  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000117149  normal 
 
 
-
 
NC_008786  Veis_2423  restriction modification system DNA specificity subunit  29.8 
 
 
426 aa  75.9  0.000000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.57431  normal 
 
 
-
 
NC_011830  Dhaf_3953  restriction modification system DNA specificity domain protein  29.94 
 
 
413 aa  76.3  0.000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0564  restriction modification system DNA specificity subunit  26.79 
 
 
415 aa  75.9  0.000000000001  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00017151  decreased coverage  6.20122e-17 
 
 
-
 
NC_007947  Mfla_1216  restriction modification system DNA specificity subunit  25.14 
 
 
427 aa  73.9  0.000000000005  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_0944  restriction modification system DNA specificity subunit  29.55 
 
 
420 aa  73.6  0.000000000007  Sulfurimonas denitrificans DSM 1251  Bacteria  hitchhiker  0.00000962716  n/a   
 
 
-
 
NC_008345  Sfri_1954  restriction modification system DNA specificity subunit  28.92 
 
 
406 aa  72.4  0.00000000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_3940  restriction modification system DNA specificity domain protein  26.51 
 
 
453 aa  72  0.00000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011206  Lferr_2009  restriction modification system DNA specificity domain  24.3 
 
 
423 aa  71.2  0.00000000003  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.999718  normal  0.91224 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>