212 homologs were found in PanDaTox collection
for query gene CPF_2598 on replicon NC_008261
Organism: Clostridium perfringens ATCC 13124



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008261  CPF_2598  type I restriction-modification enzyme, S subunit  100 
 
 
417 aa  845    Clostridium perfringens ATCC 13124  Bacteria  normal  0.0133376  n/a   
 
 
-
 
NC_011899  Hore_04450  restriction modification system DNA specificity domain protein  32.2 
 
 
422 aa  158  2e-37  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1791  restriction modification system DNA specificity subunit  26.22 
 
 
419 aa  144  3e-33  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.365715  normal 
 
 
-
 
NC_011831  Cagg_1805  restriction modification system DNA specificity domain protein  35.53 
 
 
423 aa  142  9.999999999999999e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.745604  normal  0.535567 
 
 
-
 
NC_007484  Noc_2904  restriction modification system DNA specificity subunit  28.97 
 
 
425 aa  140  4.999999999999999e-32  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_6260  restriction modification system DNA specificity domain protein  27.13 
 
 
441 aa  140  4.999999999999999e-32  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_0334  restriction modification system DNA specificity domain  26.5 
 
 
430 aa  139  7e-32  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.284396 
 
 
-
 
NC_013440  Hoch_2792  restriction modification system DNA specificity domain protein  26.25 
 
 
423 aa  139  1e-31  Haliangium ochraceum DSM 14365  Bacteria  normal  0.313089  normal 
 
 
-
 
NC_010730  SYO3AOP1_0387  restriction modification system DNA specificity domain  29.28 
 
 
435 aa  137  4e-31  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0681662  n/a   
 
 
-
 
NC_009135  MmarC5_0615  restriction modification system DNA specificity subunit  28.57 
 
 
417 aa  136  8e-31  Methanococcus maripaludis C5  Archaea  normal  0.0545068  n/a   
 
 
-
 
NC_010003  Pmob_1071  restriction modification system DNA specificity subunit  34.11 
 
 
429 aa  131  3e-29  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1897  restriction modification system DNA specificity subunit  27.61 
 
 
433 aa  128  2.0000000000000002e-28  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3793  restriction modification system DNA specificity subunit  29.3 
 
 
425 aa  128  2.0000000000000002e-28  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  27.62 
 
 
429 aa  127  5e-28  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  26.91 
 
 
425 aa  126  6e-28  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_007413  Ava_1158  restriction modification system DNA specificity subunit  24.94 
 
 
454 aa  126  9e-28  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000117149  normal 
 
 
-
 
NC_013501  Rmar_1091  restriction modification system DNA specificity domain protein  26.85 
 
 
444 aa  123  7e-27  Rhodothermus marinus DSM 4252  Bacteria  normal  0.17387  n/a   
 
 
-
 
NC_007644  Moth_1671  restriction modification system DNA specificity subunit  27.85 
 
 
442 aa  122  9.999999999999999e-27  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.517259  hitchhiker  0.00037426 
 
 
-
 
NC_008740  Maqu_2391  restriction modification system DNA specificity subunit  30.43 
 
 
374 aa  121  1.9999999999999998e-26  Marinobacter aquaeolei VT8  Bacteria  normal  0.164769  n/a   
 
 
-
 
NC_007969  Pcryo_0951  restriction modification system DNA specificity subunit  27.5 
 
 
419 aa  120  4.9999999999999996e-26  Psychrobacter cryohalolentis K5  Bacteria  normal  unclonable  0.0000406123 
 
 
-
 
NC_011831  Cagg_3297  restriction modification system DNA specificity subunit  23.35 
 
 
430 aa  118  1.9999999999999998e-25  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000489204 
 
 
-
 
NC_009616  Tmel_0403  restriction modification system DNA specificity subunit  27.62 
 
 
402 aa  118  1.9999999999999998e-25  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1778  type I restriction-modification system specificity subunit  26.98 
 
 
419 aa  115  2.0000000000000002e-24  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.926504  n/a   
 
 
-
 
NC_007575  Suden_0944  restriction modification system DNA specificity subunit  24.26 
 
 
420 aa  113  7.000000000000001e-24  Sulfurimonas denitrificans DSM 1251  Bacteria  hitchhiker  0.00000962716  n/a   
 
 
-
 
NC_004347  SO_0382  type I restriction-modification system, S subunit  23.82 
 
 
439 aa  112  1.0000000000000001e-23  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2194  restriction modification system DNA specificity subunit  25.79 
 
 
427 aa  112  2.0000000000000002e-23  Shewanella baltica OS185  Bacteria  normal  0.122675  n/a   
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  26.91 
 
 
426 aa  110  6e-23  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  30.03 
 
 
413 aa  109  7.000000000000001e-23  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_013161  Cyan8802_2277  restriction modification system DNA specificity domain protein  28.22 
 
 
433 aa  110  7.000000000000001e-23  Cyanothece sp. PCC 8802  Bacteria  normal  0.200455  hitchhiker  0.00000677276 
 
 
-
 
NC_011663  Sbal223_4189  restriction modification system DNA specificity domain protein  23.64 
 
 
401 aa  105  2e-21  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0277  restriction modification system DNA specificity subunit  26.14 
 
 
413 aa  104  3e-21  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4622  Restriction endonuclease S subunits-like protein  24.22 
 
 
411 aa  103  4e-21  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.156513 
 
 
-
 
NC_009943  Dole_0249  restriction modification system DNA specificity subunit  26.67 
 
 
393 aa  103  8e-21  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_0745  restriction modification system DNA specificity domain  28.09 
 
 
411 aa  102  2e-20  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.189202  n/a   
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  29.76 
 
 
424 aa  100  4e-20  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_004578  PSPTO_0006  type I restriction-modification system, S subunit, EcoA family  28.77 
 
 
435 aa  99  1e-19  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_2257  restriction endonuclease S subunits-like protein  30.46 
 
 
413 aa  99  1e-19  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2689  restriction modification system DNA specificity subunit  28.57 
 
 
290 aa  99  1e-19  Roseiflexus sp. RS-1  Bacteria  normal  0.841682  normal 
 
 
-
 
NC_009634  Mevan_0080  restriction modification system DNA specificity subunit  31.61 
 
 
392 aa  97.8  3e-19  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  27.13 
 
 
409 aa  96.7  7e-19  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_009438  Sputcn32_0160  restriction modification system DNA specificity subunit  29.51 
 
 
399 aa  96.7  7e-19  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_2673  restriction modification system DNA specificity subunit  25.68 
 
 
415 aa  96.3  1e-18  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.574489 
 
 
-
 
NC_008340  Mlg_0500  restriction modification system DNA specificity subunit  26.14 
 
 
413 aa  96.3  1e-18  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.565018  normal 
 
 
-
 
NC_012918  GM21_0429  restriction modification system DNA specificity domain protein  24.77 
 
 
404 aa  95.5  2e-18  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010831  Cphamn1_2548  restriction modification system DNA specificity domain  24.21 
 
 
405 aa  93.6  6e-18  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_008599  CFF8240_0988  type I restriction-modification system, S subunit  27.44 
 
 
401 aa  93.2  8e-18  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.271922  n/a   
 
 
-
 
NC_010506  Swoo_0501  restriction modification system DNA specificity subunit  31.98 
 
 
612 aa  92.4  1e-17  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.435558 
 
 
-
 
NC_009784  VIBHAR_05614  type I restriction-modification system S subunit  25.6 
 
 
432 aa  91.7  2e-17  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013158  Huta_0102  restriction modification system DNA specificity domain protein  25.55 
 
 
442 aa  91.7  2e-17  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  24.36 
 
 
456 aa  91.7  3e-17  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  24.94 
 
 
457 aa  91.3  3e-17  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009076  BURPS1106A_0098  restriction endonuclease S subunits  27.33 
 
 
315 aa  91.3  3e-17  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010085  Nmar_0605  restriction modification system DNA specificity subunit  27.31 
 
 
453 aa  90.9  4e-17  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_011761  AFE_2378  type I restriction-modification system, S subunit  28.21 
 
 
383 aa  88.2  2e-16  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2009  restriction modification system DNA specificity domain  28.21 
 
 
423 aa  88.6  2e-16  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.999718  normal  0.91224 
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  24.04 
 
 
438 aa  88.6  2e-16  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_009483  Gura_4042  restriction modification system DNA specificity subunit  24.06 
 
 
428 aa  87.8  3e-16  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C4930  type I restriction enzyme StySJI specificity protein  23.71 
 
 
469 aa  87.4  4e-16  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0564  restriction modification system DNA specificity subunit  25.08 
 
 
415 aa  87.4  4e-16  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00017151  decreased coverage  6.20122e-17 
 
 
-
 
NC_011884  Cyan7425_3075  restriction modification system DNA specificity domain protein  24.76 
 
 
388 aa  85.9  0.000000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.40504  normal 
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  28.04 
 
 
422 aa  85.5  0.000000000000001  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_002977  MCA1890  type I restriction-modification system, S subunit  24.76 
 
 
416 aa  83.2  0.000000000000007  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3055  restriction modification system DNA specificity subunit  26.67 
 
 
411 aa  83.2  0.000000000000009  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.363566  normal 
 
 
-
 
NC_011353  ECH74115_5859  putative type I restriction-modification system, S subunit  29.08 
 
 
584 aa  82.8  0.00000000000001  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_6044  type I restriction-modification system subunit S  24.29 
 
 
547 aa  82.4  0.00000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.061065  n/a   
 
 
-
 
NC_002967  TDE0368  type I restriction-modification system, S subunit, putative  27.03 
 
 
562 aa  82  0.00000000000002  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2926  restriction modification system DNA specificity subunit  33.09 
 
 
434 aa  79.7  0.00000000000008  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3989  restriction modification system DNA specificity domain protein  25.17 
 
 
456 aa  79.7  0.00000000000009  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0737122 
 
 
-
 
NC_010658  SbBS512_E4810  putative type I restriction-modification system specificity subunit  25.27 
 
 
360 aa  79.3  0.0000000000001  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_1842  restriction modification system DNA specificity subunit  27.42 
 
 
391 aa  78.2  0.0000000000002  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_008255  CHU_2939  type I restriction-modification system  24.15 
 
 
432 aa  78.2  0.0000000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0304782 
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  23.77 
 
 
477 aa  77.8  0.0000000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010718  Nther_0796  restriction modification system DNA specificity domain  23.01 
 
 
441 aa  77  0.0000000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  hitchhiker  0.00343889 
 
 
-
 
NC_013037  Dfer_5244  restriction modification system DNA specificity domain  23.39 
 
 
422 aa  77  0.0000000000006  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A0223  putative HsdS protein  23.05 
 
 
438 aa  75.9  0.000000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003235  type I restriction-modification system specificity subunit S  24.19 
 
 
437 aa  75.5  0.000000000002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3550  restriction modification system DNA specificity subunit  25.22 
 
 
417 aa  74.7  0.000000000003  Ruegeria sp. TM1040  Bacteria  normal  0.257959  normal  0.256697 
 
 
-
 
NC_013216  Dtox_2621  restriction modification system DNA specificity domain protein  25.8 
 
 
400 aa  73.9  0.000000000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_2852  restriction endonuclease S subunits-like protein  22.86 
 
 
412 aa  73.9  0.000000000005  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0584008 
 
 
-
 
NC_008786  Veis_1566  restriction modification system DNA specificity subunit  24.02 
 
 
403 aa  73.6  0.000000000006  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0293394  unclonable  0.0000192379 
 
 
-
 
NC_008786  Veis_3549  restriction modification system DNA specificity subunit  28.81 
 
 
296 aa  73.2  0.000000000008  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.348533  normal 
 
 
-
 
NC_010577  XfasM23_2180  restriction modification system DNA specificity subunit  31.58 
 
 
405 aa  73.2  0.000000000009  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_009939  Dgeo_3109  restriction modification system DNA specificity subunit  24.32 
 
 
426 aa  72  0.00000000002  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_010682  Rpic_0448  restriction modification system DNA specificity domain  24.79 
 
 
435 aa  70.1  0.00000000007  Ralstonia pickettii 12J  Bacteria  normal  hitchhiker  0.00000159098 
 
 
-
 
NC_007947  Mfla_1216  restriction modification system DNA specificity subunit  25.58 
 
 
427 aa  69.7  0.00000000008  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0076  type I restriction-modification system subunit S  21.4 
 
 
464 aa  69.7  0.00000000008  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_0446  restriction modification system DNA specificity subunit  25.16 
 
 
434 aa  69.7  0.00000000009  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.0000807768  n/a   
 
 
-
 
NC_003909  BCE_0842  type I restriction-modification enzyme, S subunit, putative  23.93 
 
 
476 aa  69.3  0.0000000001  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2226  restriction modification system DNA specificity subunit  21.41 
 
 
451 aa  69.3  0.0000000001  Mycobacterium sp. JLS  Bacteria  normal  0.890862  normal 
 
 
-
 
NC_007204  Psyc_0416  type I restriction-modification system S subunit  23.57 
 
 
457 aa  68.6  0.0000000002  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.0531711 
 
 
-
 
NC_011662  Tmz1t_0005  restriction modification system DNA specificity domain protein  23.79 
 
 
378 aa  68.6  0.0000000002  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_3358  restriction modification system DNA specificity subunit  21.52 
 
 
429 aa  68.6  0.0000000002  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0521612  normal 
 
 
-
 
NC_007947  Mfla_1176  restriction modification system DNA specificity subunit  23.93 
 
 
408 aa  67.8  0.0000000003  Methylobacillus flagellatus KT  Bacteria  normal  0.882603  normal 
 
 
-
 
NC_011061  Paes_2397  restriction modification system DNA specificity domain  26.69 
 
 
417 aa  67.8  0.0000000003  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000238697  n/a   
 
 
-
 
NC_013440  Hoch_5008  Restriction endonuclease S subunits-like protein  20.92 
 
 
465 aa  68.2  0.0000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.441656 
 
 
-
 
NC_010571  Oter_3010  restriction endonuclease S subunits-like protein  22.87 
 
 
388 aa  67.4  0.0000000005  Opitutus terrae PB90-1  Bacteria  normal  0.116402  normal  0.20864 
 
 
-
 
NC_008740  Maqu_0030  restriction modification system DNA specificity subunit  23.84 
 
 
435 aa  67  0.0000000006  Marinobacter aquaeolei VT8  Bacteria  normal  0.534213  n/a   
 
 
-
 
NC_008789  Hhal_1153  restriction modification system DNA specificity subunit  26.34 
 
 
429 aa  67  0.0000000006  Halorhodospira halophila SL1  Bacteria  normal  0.487263  n/a   
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  29.49 
 
 
414 aa  66.6  0.0000000007  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_009051  Memar_1093  restriction modification system DNA specificity subunit  24.89 
 
 
394 aa  66.6  0.0000000007  Methanoculleus marisnigri JR1  Archaea  normal  0.614941  n/a   
 
 
-
 
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