Gene SO_0382 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_0382 
SymbolhsdS-1 
ID1168259 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp395983 
End bp397302 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content39% 
IMG OID637342384 
Producttype I restriction-modification system, S subunit 
Protein accessionNP_716020 
Protein GI24371978 
COG category[V] Defense mechanisms 
COG ID[COG0732] Restriction endonuclease S subunits 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCATA GTATCCTTAG CCCATTTGGT AAAATACCCA ATGACTGGGA GTATCAGATA 
ATTATTGATA ATGTTGAGTT TTTGACAGGT CCAGCTTTTG ATAGCAGCTT ATTTAACACC
GAATCGCGTG GTGCTAGGTT GGTTCGTGGA ATTAACTTGA CTCAAGGTTC AACTCGTTGG
GGAGAAGATA AGACTAAATA TTGGGATGTC GAGTTAAATA ACCTTAAAAA ATACCAATTA
GCCATAAACG ATATATTGAT CGGTATGGAT GGTTCATTAG TTGGTAAAAA CTATGCTTAT
TTAAAACAGT CAGATTTACC AGCATTATTA GTACAGCGAG TTGCTCGACT TAGAGCCAAA
AGCAATCTGC ACTCTAAGTA TCTGTATTAT ATGTATGCTA CTGATTTTTG GTTGGATTAT
GTAGAGGTTG TAAAAACTAA CTCAGGTATT CCACATATCT CTAATGGTGA TATTAAGAAT
TTTAGATTCC CATTTCCTCC ACTCCCAGAG CAGCAAAAAA TTGCGGCAAT TTTGACTTCT
GTGGATGAGG TAATTGAAAA AACACAGGCG CAAATCGACA AGCTCAAAGA TTTAAAAAGC
GGCATGATGC AGGAACTGCT CACAAAGGGT GTTGGCATCA AGCAAGGTGA TAAATATGTG
CCCCACATCG AATTTAAAGA CTCCCCCGTT GGCAAAATCC CAAAGAGCTG GGAAGTTAAA
CCGTTAAACT CCGTTGTACT CAAGATTATT GATTGTGAAC ATAAGACCGC TCCATATGTC
GATAAATCAG AGTACTTAGT GGTTAGGACT AGTAATGTTA GGCACGGCGA ACTTGTATTA
GACGATATGA AATACACTCA TGCAGATGGT TATGCTGAAT GGACAAATAG AGCTATCCCC
TCGTTAGGAG ATGTCCTTTT TACTAGGGAA GCTCCCGCTG GTGAATCTTG TCTTGTGCCA
GAGAATACAA AGGTCTGTAT GGGACAACGT ATGGTACTTC TTCGACCAGA CGCTAATGTG
ATATTTTCAA ATTTTTTCTC TTTATTTTTA ACTTCAGAAG CTGCTTCATG TGCTATTTAT
GAGCGATCTA TTGGTACAAC GGTTAGTCGG ATCAATATAG AGGATATTAA GCGTATCCCA
TGCATTGTTC CTCCATTAAG CGAGCAACAA GAAATCTCAA AAGCGATACA AAGCGTTCAA
AACTCAATTT TAAACAAACA GGAAAAGCTA CAATCGTTGA AAAACCTCAA AAAAGCCCTG
ATGCAGGATC TATTGACGGG TAAAGTGCGG GTTAAGGTCG ATAACGATTT AGTAGTCTAA
 
Protein sequence
MSHSILSPFG KIPNDWEYQI IIDNVEFLTG PAFDSSLFNT ESRGARLVRG INLTQGSTRW 
GEDKTKYWDV ELNNLKKYQL AINDILIGMD GSLVGKNYAY LKQSDLPALL VQRVARLRAK
SNLHSKYLYY MYATDFWLDY VEVVKTNSGI PHISNGDIKN FRFPFPPLPE QQKIAAILTS
VDEVIEKTQA QIDKLKDLKS GMMQELLTKG VGIKQGDKYV PHIEFKDSPV GKIPKSWEVK
PLNSVVLKII DCEHKTAPYV DKSEYLVVRT SNVRHGELVL DDMKYTHADG YAEWTNRAIP
SLGDVLFTRE APAGESCLVP ENTKVCMGQR MVLLRPDANV IFSNFFSLFL TSEAASCAIY
ERSIGTTVSR INIEDIKRIP CIVPPLSEQQ EISKAIQSVQ NSILNKQEKL QSLKNLKKAL
MQDLLTGKVR VKVDNDLVV