210 homologs were found in PanDaTox collection
for query gene Dgeo_3109 on replicon NC_009939
Organism: Deinococcus geothermalis DSM 11300



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009939  Dgeo_3109  restriction modification system DNA specificity subunit  100 
 
 
426 aa  877    Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_008786  Veis_1566  restriction modification system DNA specificity subunit  61.92 
 
 
403 aa  421  1e-116  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0293394  unclonable  0.0000192379 
 
 
-
 
NC_013161  Cyan8802_2277  restriction modification system DNA specificity domain protein  35.35 
 
 
433 aa  252  1e-65  Cyanothece sp. PCC 8802  Bacteria  normal  0.200455  hitchhiker  0.00000677276 
 
 
-
 
NC_010730  SYO3AOP1_0387  restriction modification system DNA specificity domain  34.03 
 
 
435 aa  244  3e-63  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0681662  n/a   
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  42.96 
 
 
426 aa  233  4.0000000000000004e-60  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  42.62 
 
 
409 aa  200  5e-50  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  31.61 
 
 
457 aa  177  3e-43  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007947  Mfla_1176  restriction modification system DNA specificity subunit  35.29 
 
 
408 aa  176  7e-43  Methylobacillus flagellatus KT  Bacteria  normal  0.882603  normal 
 
 
-
 
NC_009523  RoseRS_0735  restriction modification system DNA specificity subunit  40 
 
 
392 aa  174  1.9999999999999998e-42  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.142305 
 
 
-
 
NC_013502  Rmar_2893  restriction modification system DNA specificity domain protein  41.33 
 
 
237 aa  173  3.9999999999999995e-42  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1095  restriction modification system DNA specificity subunit  49.66 
 
 
180 aa  158  2e-37  Methanosphaerula palustris E1-9c  Archaea  normal  0.0307222  normal  0.460019 
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  35.11 
 
 
456 aa  155  1e-36  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_010814  Glov_0844  restriction endonuclease S subunits-like protein  36.13 
 
 
386 aa  134  3.9999999999999996e-30  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0599  type I restriction-modification system, S subunit  31.05 
 
 
458 aa  131  2.0000000000000002e-29  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1158  restriction modification system DNA specificity subunit  26.21 
 
 
454 aa  124  3e-27  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000117149  normal 
 
 
-
 
NC_011071  Smal_1037  restriction modification system DNA specificity domain  30.34 
 
 
364 aa  122  1.9999999999999998e-26  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0890662  normal 
 
 
-
 
NC_010581  Bind_2673  restriction modification system DNA specificity subunit  33.62 
 
 
415 aa  121  1.9999999999999998e-26  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.574489 
 
 
-
 
NC_010831  Cphamn1_0334  restriction modification system DNA specificity domain  30.4 
 
 
430 aa  115  2.0000000000000002e-24  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.284396 
 
 
-
 
NC_009832  Spro_4083  restriction modification system DNA specificity subunit  25.45 
 
 
409 aa  113  8.000000000000001e-24  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1087  restriction modification system DNA specificity subunit  34.18 
 
 
437 aa  111  2.0000000000000002e-23  Opitutus terrae PB90-1  Bacteria  normal  0.0762586  normal 
 
 
-
 
NC_008740  Maqu_3382  restriction modification system DNA specificity subunit  31.58 
 
 
485 aa  111  3e-23  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_2852  restriction endonuclease S subunits-like protein  25.77 
 
 
412 aa  108  1e-22  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0584008 
 
 
-
 
NC_011761  AFE_1576  type I restriction-modification system, S subunit  28.57 
 
 
399 aa  108  2e-22  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.200835  n/a   
 
 
-
 
NC_011663  Sbal223_4189  restriction modification system DNA specificity domain protein  31.03 
 
 
401 aa  108  2e-22  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  28.52 
 
 
425 aa  107  3e-22  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  25.08 
 
 
429 aa  104  3e-21  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  26.3 
 
 
413 aa  103  8e-21  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  34.24 
 
 
414 aa  99  1e-19  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1398  restriction modification system DNA specificity subunit  32.14 
 
 
557 aa  97.8  3e-19  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1671  restriction modification system DNA specificity subunit  27.11 
 
 
442 aa  95.9  1e-18  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.517259  hitchhiker  0.00037426 
 
 
-
 
NC_010003  Pmob_1897  restriction modification system DNA specificity subunit  26.98 
 
 
433 aa  94  5e-18  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B4821  type I restriction-modification system, endonuclease S subunit  25.59 
 
 
382 aa  93.2  7e-18  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_4012  restriction modification system DNA specificity subunit  25.86 
 
 
436 aa  92.4  1e-17  Frankia sp. CcI3  Bacteria  normal  0.848484  normal  0.567977 
 
 
-
 
NC_007519  Dde_2869  type I restriction-modification system, S subunit  23.4 
 
 
448 aa  92  2e-17  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0947716  n/a   
 
 
-
 
NC_008043  TM1040_3550  restriction modification system DNA specificity subunit  26.95 
 
 
417 aa  92  2e-17  Ruegeria sp. TM1040  Bacteria  normal  0.257959  normal  0.256697 
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  24.94 
 
 
438 aa  90.9  3e-17  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_009715  CCV52592_1061  putative type I restriction-modification system, S subunit  23.25 
 
 
528 aa  89  2e-16  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03610  type I site-specific deoxyribonuclease  27.18 
 
 
360 aa  88.6  2e-16  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0262  type I restriction-modification system specificity determinant  25.77 
 
 
360 aa  88.2  3e-16  Xylella fastidiosa M12  Bacteria  normal  0.874092  n/a   
 
 
-
 
NC_008751  Dvul_0487  restriction modification system DNA specificity subunit  27.74 
 
 
438 aa  86.7  7e-16  Desulfovibrio vulgaris DP4  Bacteria  normal  0.700794  normal  0.0187002 
 
 
-
 
NC_009049  Rsph17029_1858  restriction modification system DNA specificity subunit  25.96 
 
 
456 aa  86.7  7e-16  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0086  restriction modification system DNA specificity protein  28.64 
 
 
538 aa  85.9  0.000000000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3515  restriction modification system DNA specificity domain  28.64 
 
 
514 aa  85.5  0.000000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2452  restriction modification system DNA specificity domain-containing protein  26.55 
 
 
419 aa  84.7  0.000000000000003  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.587532 
 
 
-
 
NC_011146  Gbem_3569  restriction modification system DNA specificity domain  32.47 
 
 
395 aa  84.7  0.000000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  0.0185936  n/a   
 
 
-
 
NC_011206  Lferr_0227  restriction modification system DNA specificity domain  24.04 
 
 
395 aa  84.3  0.000000000000004  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_0287  restriction modification system DNA specificity domain protein  25.69 
 
 
429 aa  83.6  0.000000000000006  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_3793  restriction modification system DNA specificity subunit  24.42 
 
 
425 aa  83.2  0.000000000000008  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  25.87 
 
 
422 aa  82.8  0.00000000000001  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_011060  Ppha_1452  restriction modification system DNA specificity domain  26.53 
 
 
392 aa  81.6  0.00000000000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.0462219  n/a   
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  25.15 
 
 
432 aa  82.4  0.00000000000002  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_012793  GWCH70_1643  restriction modification system DNA specificity domain protein  22.92 
 
 
428 aa  81.3  0.00000000000003  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3227  restriction modification system DNA specificity subunit  29.27 
 
 
575 aa  80.1  0.00000000000007  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  30.58 
 
 
616 aa  80.1  0.00000000000007  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2792  restriction modification system DNA specificity domain protein  25.99 
 
 
423 aa  79.7  0.00000000000008  Haliangium ochraceum DSM 14365  Bacteria  normal  0.313089  normal 
 
 
-
 
NC_007298  Daro_1307  restriction modification system DNA specificity subunit  26.52 
 
 
285 aa  79.7  0.00000000000008  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.186237 
 
 
-
 
NC_007514  Cag_1526  restriction endonuclease S subunits-like  27.8 
 
 
386 aa  79  0.0000000000001  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3653  type I restriction enzyme StySPI specificity protein  26.42 
 
 
460 aa  79.3  0.0000000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.234587  normal  0.701676 
 
 
-
 
NC_013203  Apar_0198  restriction modification system DNA specificity domain protein  25.09 
 
 
386 aa  79.7  0.0000000000001  Atopobium parvulum DSM 20469  Bacteria  normal  0.719886  decreased coverage  0.000218103 
 
 
-
 
NC_009523  RoseRS_2689  restriction modification system DNA specificity subunit  28.2 
 
 
290 aa  79  0.0000000000001  Roseiflexus sp. RS-1  Bacteria  normal  0.841682  normal 
 
 
-
 
NC_013456  VEA_003235  type I restriction-modification system specificity subunit S  26.78 
 
 
437 aa  79  0.0000000000002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1805  restriction modification system DNA specificity domain protein  24.73 
 
 
423 aa  78.6  0.0000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.745604  normal  0.535567 
 
 
-
 
NC_013595  Sros_7555  Restriction endonuclease S subunits-like protein  23.1 
 
 
402 aa  77.8  0.0000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3129  restriction modification system DNA specificity subunit  25.25 
 
 
416 aa  78.2  0.0000000000003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.343622  normal  0.0250234 
 
 
-
 
NC_008599  CFF8240_1393  restriction and modification enzyme CjeI  28.57 
 
 
1285 aa  77.8  0.0000000000004  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1015  restriction modification system DNA specificity subunit  30.65 
 
 
575 aa  77.8  0.0000000000004  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_2226  restriction modification system DNA specificity subunit  29.53 
 
 
451 aa  77.4  0.0000000000004  Mycobacterium sp. JLS  Bacteria  normal  0.890862  normal 
 
 
-
 
NC_011898  Ccel_2722  restriction modification system DNA specificity domain protein  25.69 
 
 
385 aa  77.4  0.0000000000005  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0414  restriction modification system DNA specificity subunit  28.38 
 
 
439 aa  75.9  0.000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.405933  n/a   
 
 
-
 
NC_009338  Mflv_2409  restriction modification system DNA specificity subunit  23.42 
 
 
442 aa  74.7  0.000000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.39474  normal 
 
 
-
 
NC_012669  Bcav_1496  restriction modification system DNA specificity domain protein  29.29 
 
 
427 aa  74.3  0.000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.136919  normal 
 
 
-
 
NC_009379  Pnuc_1132  restriction modification system DNA specificity subunit  32.81 
 
 
556 aa  74.3  0.000000000004  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.817215  n/a   
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  24.05 
 
 
424 aa  73.9  0.000000000005  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_011353  ECH74115_5859  putative type I restriction-modification system, S subunit  26.8 
 
 
584 aa  73.2  0.000000000009  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05614  type I restriction-modification system S subunit  24.49 
 
 
432 aa  72.4  0.00000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  24.37 
 
 
420 aa  72.4  0.00000000001  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_20210  restriction modification system DNA specificity domain protein  33.33 
 
 
565 aa  71.6  0.00000000002  Halothermothrix orenii H 168  Bacteria  normal  0.266778  n/a   
 
 
-
 
NC_010717  PXO_02074  HsdS polypeptide, part of CfrA family  38.24 
 
 
151 aa  71.6  0.00000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1091  restriction modification system DNA specificity domain protein  26.27 
 
 
444 aa  72  0.00000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  0.17387  n/a   
 
 
-
 
NC_010577  XfasM23_0232  restriction endonuclease S subunit-like protein  29.53 
 
 
192 aa  72  0.00000000002  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_0900  restriction modification system DNA specificity domain protein  28.71 
 
 
471 aa  72  0.00000000002  Methanosphaerula palustris E1-9c  Archaea  normal  normal  0.963501 
 
 
-
 
NC_011899  Hore_04450  restriction modification system DNA specificity domain protein  24.72 
 
 
422 aa  71.6  0.00000000003  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4139  restriction modification system DNA specificity domain protein  24.88 
 
 
238 aa  71.2  0.00000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010682  Rpic_0448  restriction modification system DNA specificity domain  24.18 
 
 
435 aa  70.9  0.00000000004  Ralstonia pickettii 12J  Bacteria  normal  hitchhiker  0.00000159098 
 
 
-
 
NC_013422  Hneap_0614  restriction modification system DNA specificity domain protein  24.36 
 
 
401 aa  70.1  0.00000000007  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0804  restriction modification system DNA specificity subunit  28.06 
 
 
368 aa  69.7  0.00000000009  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.526121  normal  0.427419 
 
 
-
 
NC_004347  SO_0382  type I restriction-modification system, S subunit  21.81 
 
 
439 aa  69.3  0.0000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010468  EcolC_3719  restriction modification system DNA specificity subunit  26.29 
 
 
585 aa  69.3  0.0000000001  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0959  restriction modification system DNA specificity domain protein  24.57 
 
 
442 aa  69.7  0.0000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011668  Sbal223_4454  restriction modification system DNA specificity domain protein  27 
 
 
406 aa  68.6  0.0000000002  Shewanella baltica OS223  Bacteria  normal  0.859615  normal 
 
 
-
 
NC_003909  BCE_0842  type I restriction-modification enzyme, S subunit, putative  26.11 
 
 
476 aa  67.8  0.0000000004  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1071  restriction modification system DNA specificity subunit  21.02 
 
 
429 aa  67.4  0.0000000004  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1060  restriction modification system DNA specificity subunit  26.67 
 
 
397 aa  66.6  0.0000000008  Rhodoferax ferrireducens T118  Bacteria  normal  0.588803  n/a   
 
 
-
 
NC_007484  Noc_2904  restriction modification system DNA specificity subunit  21.9 
 
 
425 aa  65.9  0.000000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2909  restriction modification system DNA specificity subunit  25.17 
 
 
440 aa  66.2  0.000000001  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3768  restriction modification system DNA specificity subunit  25.73 
 
 
374 aa  66.2  0.000000001  Frankia sp. EAN1pec  Bacteria  normal  0.36553  normal 
 
 
-
 
NC_008312  Tery_2421  restriction modification system DNA specificity subunit  22.96 
 
 
402 aa  65.1  0.000000003  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.318068 
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  26.99 
 
 
477 aa  64.3  0.000000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009943  Dole_2726  restriction modification system DNA specificity subunit  23.23 
 
 
500 aa  63.9  0.000000005  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4252  restriction modification system DNA specificity domain protein  28.11 
 
 
462 aa  63.5  0.000000006  Dickeya zeae Ech1591  Bacteria  normal  0.132013  n/a   
 
 
-
 
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