32 homologs were found in PanDaTox collection
for query gene Xfasm12_0262 on replicon NC_010513
Organism: Xylella fastidiosa M12



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010513  Xfasm12_0262  type I restriction-modification system specificity determinant  100 
 
 
360 aa  749    Xylella fastidiosa M12  Bacteria  normal  0.874092  n/a   
 
 
-
 
NC_010577  XfasM23_0232  restriction endonuclease S subunit-like protein  88.95 
 
 
192 aa  354  2e-96  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_2652  Restriction endonuclease S subunits-like protein  39.27 
 
 
413 aa  139  6e-32  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.252104  n/a   
 
 
-
 
NC_008347  Mmar10_0162  restriction modification system DNA specificity subunit  47.62 
 
 
383 aa  97.1  5e-19  Maricaulis maris MCS10  Bacteria  normal  normal  0.323401 
 
 
-
 
NC_008346  Swol_0513  hypothetical protein  39.52 
 
 
153 aa  93.6  4e-18  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009939  Dgeo_3109  restriction modification system DNA specificity subunit  25.77 
 
 
426 aa  88.2  2e-16  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_008530  LGAS_0901  restriction endonuclease S subunit  40.78 
 
 
363 aa  76.3  0.0000000000009  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.000000124976  hitchhiker  0.000000573897 
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  19.02 
 
 
457 aa  69.7  0.00000000008  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A1366  hypothetical protein  26.05 
 
 
462 aa  69.3  0.0000000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  25.73 
 
 
456 aa  66.2  0.0000000008  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  32.99 
 
 
409 aa  63.5  0.000000005  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  32.99 
 
 
426 aa  63.5  0.000000005  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_007413  Ava_1158  restriction modification system DNA specificity subunit  25.11 
 
 
454 aa  57.8  0.0000003  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000117149  normal 
 
 
-
 
NC_010730  SYO3AOP1_0387  restriction modification system DNA specificity domain  24.62 
 
 
435 aa  56.2  0.0000007  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0681662  n/a   
 
 
-
 
NC_010718  Nther_0796  restriction modification system DNA specificity domain  22.71 
 
 
441 aa  56.2  0.0000008  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  hitchhiker  0.00343889 
 
 
-
 
NC_010831  Cphamn1_0334  restriction modification system DNA specificity domain  29.6 
 
 
430 aa  55.8  0.000001  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.284396 
 
 
-
 
NC_013161  Cyan8802_2277  restriction modification system DNA specificity domain protein  24.38 
 
 
433 aa  55.5  0.000001  Cyanothece sp. PCC 8802  Bacteria  normal  0.200455  hitchhiker  0.00000677276 
 
 
-
 
NC_008786  Veis_1566  restriction modification system DNA specificity subunit  24.29 
 
 
403 aa  55.1  0.000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0293394  unclonable  0.0000192379 
 
 
-
 
NC_008530  LGAS_0899  restriction endonuclease S subunit  30.19 
 
 
396 aa  54.3  0.000003  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.0000000681459  hitchhiker  0.00000169581 
 
 
-
 
NC_009784  VIBHAR_05614  type I restriction-modification system S subunit  24.55 
 
 
432 aa  53.9  0.000005  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007947  Mfla_1176  restriction modification system DNA specificity subunit  27.57 
 
 
408 aa  53.1  0.000007  Methylobacillus flagellatus KT  Bacteria  normal  0.882603  normal 
 
 
-
 
NC_010831  Cphamn1_0750  putative type I restriction-modification system  26.76 
 
 
436 aa  52  0.00001  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.769779  normal  0.272821 
 
 
-
 
NC_011831  Cagg_1805  restriction modification system DNA specificity domain protein  21.99 
 
 
423 aa  51.6  0.00002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.745604  normal  0.535567 
 
 
-
 
NC_013501  Rmar_1091  restriction modification system DNA specificity domain protein  31 
 
 
444 aa  50.8  0.00003  Rhodothermus marinus DSM 4252  Bacteria  normal  0.17387  n/a   
 
 
-
 
NC_007484  Noc_2688  restriction endonuclease S subunits-like  23.14 
 
 
487 aa  49.7  0.00009  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.165356  n/a   
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  24.66 
 
 
429 aa  48.9  0.0001  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2960  restriction modification system DNA specificity subunit  29.11 
 
 
587 aa  44.3  0.003  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2409  restriction modification system DNA specificity subunit  22.14 
 
 
442 aa  44.3  0.003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.39474  normal 
 
 
-
 
NC_012917  PC1_2875  restriction modification system DNA specificity domain protein  23.29 
 
 
390 aa  43.9  0.004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1897  restriction modification system DNA specificity subunit  26.74 
 
 
433 aa  43.5  0.006  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1671  restriction modification system DNA specificity subunit  30.17 
 
 
442 aa  43.1  0.007  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.517259  hitchhiker  0.00037426 
 
 
-
 
NC_013502  Rmar_2893  restriction modification system DNA specificity domain protein  25.42 
 
 
237 aa  43.1  0.008  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>