174 homologs were found in PanDaTox collection
for query gene Shew185_1978 on replicon NC_009665
Organism: Shewanella baltica OS185



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  100 
 
 
616 aa  1259    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1237  restriction modification system DNA specificity subunit  48.02 
 
 
633 aa  488  1e-136  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0501  restriction modification system DNA specificity subunit  50 
 
 
612 aa  466  9.999999999999999e-131  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.435558 
 
 
-
 
NC_010468  EcolC_3719  restriction modification system DNA specificity subunit  39.84 
 
 
585 aa  372  1e-102  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_5859  putative type I restriction-modification system, S subunit  39.71 
 
 
584 aa  370  1e-101  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_1897  restriction modification system DNA specificity subunit  39.06 
 
 
611 aa  367  1e-100  Psychromonas ingrahamii 37  Bacteria  normal  hitchhiker  0.00184495 
 
 
-
 
NC_011761  AFE_0686  type I restriction-modification system, S subunit, putative  41.03 
 
 
561 aa  356  6.999999999999999e-97  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.840975  n/a   
 
 
-
 
NC_011206  Lferr_0835  restriction modification system DNA specificity domain  41.03 
 
 
563 aa  356  7.999999999999999e-97  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.835919  normal  0.945638 
 
 
-
 
NC_011080  SNSL254_A4880  putative type I restriction-modification system S subunit  39.29 
 
 
571 aa  345  2e-93  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.960431 
 
 
-
 
NC_009943  Dole_0822  restriction modification system DNA specificity subunit  40.03 
 
 
577 aa  341  2e-92  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_2862  restriction modification system DNA specificity subunit  39.68 
 
 
589 aa  341  2.9999999999999998e-92  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_6044  type I restriction-modification system subunit S  38.9 
 
 
547 aa  308  2.0000000000000002e-82  Pseudomonas aeruginosa PA7  Bacteria  normal  0.061065  n/a   
 
 
-
 
NC_009512  Pput_4611  restriction modification system DNA specificity subunit  36.22 
 
 
561 aa  291  2e-77  Pseudomonas putida F1  Bacteria  normal  0.483614  hitchhiker  0.0000795371 
 
 
-
 
NC_009379  Pnuc_1132  restriction modification system DNA specificity subunit  31.32 
 
 
556 aa  281  3e-74  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.817215  n/a   
 
 
-
 
NC_008609  Ppro_0355  restriction modification system DNA specificity subunit  32.55 
 
 
590 aa  247  4.9999999999999997e-64  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1015  restriction modification system DNA specificity subunit  31.6 
 
 
575 aa  241  2.9999999999999997e-62  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4742  type I restriction-modification system, S subunit  33.89 
 
 
576 aa  228  3e-58  Pseudomonas putida KT2440  Bacteria  normal  0.266617  hitchhiker  0.00441093 
 
 
-
 
NC_007413  Ava_3267  restriction modification system DNA specificity subunit  29.41 
 
 
557 aa  224  4e-57  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0920403  decreased coverage  0.00535253 
 
 
-
 
NC_011899  Hore_20210  restriction modification system DNA specificity domain protein  30.93 
 
 
565 aa  219  1e-55  Halothermothrix orenii H 168  Bacteria  normal  0.266778  n/a   
 
 
-
 
NC_007484  Noc_3030  restriction modification system DNA specificity subunit  31.53 
 
 
564 aa  206  1e-51  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1311  restriction modification system DNA specificity subunit  30.87 
 
 
578 aa  202  9.999999999999999e-51  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008639  Cpha266_1398  restriction modification system DNA specificity subunit  28.52 
 
 
557 aa  201  5e-50  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1253  Type I restriction enzyme EcoAI specificity protein  31.13 
 
 
597 aa  197  6e-49  Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  0.00376854  normal 
 
 
-
 
NC_007519  Dde_2496  subunit S of type I restriction-modification system  29.19 
 
 
565 aa  187  5e-46  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00268922  n/a   
 
 
-
 
NC_011884  Cyan7425_1201  restriction modification system DNA specificity domain protein  31.4 
 
 
572 aa  186  9e-46  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009715  CCV52592_1061  putative type I restriction-modification system, S subunit  39.38 
 
 
528 aa  184  5.0000000000000004e-45  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3227  restriction modification system DNA specificity subunit  30.42 
 
 
575 aa  181  4e-44  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  37.11 
 
 
456 aa  130  1.0000000000000001e-28  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_009974  Haur_5276  restriction modification system DNA specificity subunit  39.74 
 
 
418 aa  128  3e-28  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0448  restriction modification system DNA specificity domain  38.6 
 
 
435 aa  127  6e-28  Ralstonia pickettii 12J  Bacteria  normal  hitchhiker  0.00000159098 
 
 
-
 
NC_013456  VEA_003235  type I restriction-modification system specificity subunit S  38.89 
 
 
437 aa  125  2e-27  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  35.32 
 
 
457 aa  124  6e-27  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009972  Haur_1281  restriction modification system DNA specificity subunit  29.43 
 
 
398 aa  124  7e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3653  type I restriction enzyme StySPI specificity protein  35.23 
 
 
460 aa  122  9.999999999999999e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.234587  normal  0.701676 
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  35.68 
 
 
477 aa  117  5e-25  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012912  Dd1591_4252  restriction modification system DNA specificity domain protein  37.82 
 
 
462 aa  117  6e-25  Dickeya zeae Ech1591  Bacteria  normal  0.132013  n/a   
 
 
-
 
NC_009135  MmarC5_1170  restriction modification system DNA specificity subunit  36.75 
 
 
402 aa  116  1.0000000000000001e-24  Methanococcus maripaludis C5  Archaea  normal  0.249165  n/a   
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  35.39 
 
 
424 aa  115  2.0000000000000002e-24  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  37.2 
 
 
432 aa  112  2.0000000000000002e-23  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_011761  AFE_1576  type I restriction-modification system, S subunit  35.11 
 
 
399 aa  111  3e-23  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.200835  n/a   
 
 
-
 
NC_010814  Glov_1414  restriction modification system DNA specificity domain  30.6 
 
 
447 aa  111  5e-23  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.00014984  n/a   
 
 
-
 
NC_009483  Gura_1027  restriction modification system DNA specificity subunit  37.27 
 
 
420 aa  110  6e-23  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE2744  type I restriction-modification system, S subunit  25.08 
 
 
532 aa  108  2e-22  Treponema denticola ATCC 35405  Bacteria  normal  0.0181132  n/a   
 
 
-
 
NC_011729  PCC7424_2086  restriction modification system DNA specificity domain protein  33.65 
 
 
417 aa  106  2e-21  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000683293 
 
 
-
 
NC_011662  Tmz1t_3599  restriction modification system DNA specificity domain protein  34.09 
 
 
532 aa  105  3e-21  Thauera sp. MZ1T  Bacteria  normal  0.743632  n/a   
 
 
-
 
NC_007908  Rfer_1060  restriction modification system DNA specificity subunit  34.43 
 
 
397 aa  102  2e-20  Rhodoferax ferrireducens T118  Bacteria  normal  0.588803  n/a   
 
 
-
 
NC_013730  Slin_3089  restriction modification system DNA specificity domain protein  30.9 
 
 
520 aa  100  9e-20  Spirosoma linguale DSM 74  Bacteria  normal  0.497517  normal  0.376247 
 
 
-
 
NC_014148  Plim_1220  restriction modification system DNA specificity domain protein  32.76 
 
 
620 aa  92.4  2e-17  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1195  type II restriction-modification enzyme  25.2 
 
 
1343 aa  91.7  4e-17  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  31.11 
 
 
422 aa  91.3  5e-17  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_007777  Francci3_0193  type I restriction-modification system specificity determinant  32.28 
 
 
416 aa  90.5  7e-17  Frankia sp. CcI3  Bacteria  normal  normal  0.311495 
 
 
-
 
NC_008599  CFF8240_1393  restriction and modification enzyme CjeI  33.12 
 
 
1285 aa  89  2e-16  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_0371  type I restriction-modification system S subunit  29.62 
 
 
323 aa  89.4  2e-16  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_0128  N-6 DNA methylase  31.41 
 
 
846 aa  88.2  4e-16  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1307  restriction modification system DNA specificity subunit  30.53 
 
 
285 aa  87.8  6e-16  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.186237 
 
 
-
 
NC_011149  SeAg_B4821  type I restriction-modification system, endonuclease S subunit  31.93 
 
 
382 aa  86.7  0.000000000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_0508  restriction modification system DNA specificity subunit  30.46 
 
 
511 aa  85.1  0.000000000000004  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_007355  Mbar_A3272  type I restriction-modification system specificity subunit  25.91 
 
 
492 aa  84.3  0.000000000000006  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.425878  normal  0.243207 
 
 
-
 
NC_008043  TM1040_3540  restriction modification system DNA specificity subunit  29.82 
 
 
387 aa  83.2  0.00000000000001  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_0845  restriction modification system DNA specificity domain protein  26.99 
 
 
495 aa  83.6  0.00000000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.31571e-19 
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  27.38 
 
 
438 aa  82  0.00000000000003  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_008639  Cpha266_1492  restriction modification system DNA specificity subunit  30.63 
 
 
479 aa  80.1  0.0000000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_009939  Dgeo_3109  restriction modification system DNA specificity subunit  30.58 
 
 
426 aa  80.1  0.0000000000001  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_008786  Veis_1566  restriction modification system DNA specificity subunit  32.65 
 
 
403 aa  79  0.0000000000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0293394  unclonable  0.0000192379 
 
 
-
 
NC_009483  Gura_2097  restriction modification system DNA specificity subunit  29.93 
 
 
393 aa  77.4  0.0000000000007  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0959  restriction modification system DNA specificity domain protein  28.28 
 
 
442 aa  76.6  0.000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011668  Sbal223_4454  restriction modification system DNA specificity domain protein  28.43 
 
 
406 aa  76.6  0.000000000001  Shewanella baltica OS223  Bacteria  normal  0.859615  normal 
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  31.53 
 
 
426 aa  76.6  0.000000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_003909  BCE_0842  type I restriction-modification enzyme, S subunit, putative  26.63 
 
 
476 aa  75.9  0.000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1858  restriction modification system DNA specificity subunit  25.86 
 
 
456 aa  76.3  0.000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  32.7 
 
 
414 aa  75.1  0.000000000003  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE0368  type I restriction-modification system, S subunit, putative  34.65 
 
 
562 aa  73.9  0.000000000008  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0149  restriction modification system DNA specificity subunit  29.07 
 
 
400 aa  73.2  0.00000000001  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1037  restriction modification system DNA specificity domain  25.78 
 
 
364 aa  73.2  0.00000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0890662  normal 
 
 
-
 
NC_012669  Bcav_0504  restriction modification system DNA specificity domain protein  27.65 
 
 
408 aa  72  0.00000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2960  restriction modification system DNA specificity subunit  27.34 
 
 
587 aa  72  0.00000000003  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1496  restriction modification system DNA specificity domain protein  27.53 
 
 
427 aa  71.6  0.00000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.136919  normal 
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  27.32 
 
 
413 aa  70.1  0.0000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_008345  Sfri_1954  restriction modification system DNA specificity subunit  30.36 
 
 
406 aa  70.1  0.0000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_4083  restriction modification system DNA specificity subunit  31.25 
 
 
409 aa  70.1  0.0000000001  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  34.82 
 
 
420 aa  69.7  0.0000000002  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_02076  hypothetical protein  56.14 
 
 
292 aa  68.9  0.0000000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1502  restriction modification system DNA specificity domain  29.7 
 
 
393 aa  68.6  0.0000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_2673  restriction modification system DNA specificity subunit  30.13 
 
 
415 aa  68.6  0.0000000003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.574489 
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  34.38 
 
 
409 aa  68.6  0.0000000003  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_011060  Ppha_1219  restriction modification system DNA specificity domain  26.76 
 
 
412 aa  68.9  0.0000000003  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2423  restriction modification system DNA specificity subunit  29.33 
 
 
426 aa  67.4  0.0000000008  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.57431  normal 
 
 
-
 
NC_008573  Shewana3_4163  restriction modification system DNA specificity subunit  30.43 
 
 
405 aa  67  0.0000000009  Shewanella sp. ANA-3  Bacteria  normal  0.864984  normal  0.0584456 
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  23.9 
 
 
429 aa  66.2  0.000000002  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  25.64 
 
 
425 aa  65.5  0.000000003  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_008740  Maqu_0414  restriction modification system DNA specificity subunit  27.78 
 
 
439 aa  65.5  0.000000003  Marinobacter aquaeolei VT8  Bacteria  normal  0.405933  n/a   
 
 
-
 
NC_010717  PXO_02063  type I restriction-modification system, S subunit  23.84 
 
 
501 aa  65.5  0.000000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2093  restriction modification system DNA specificity subunit  21.01 
 
 
477 aa  65.5  0.000000003  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0198  restriction modification system DNA specificity domain protein  38.79 
 
 
386 aa  65.1  0.000000004  Atopobium parvulum DSM 20469  Bacteria  normal  0.719886  decreased coverage  0.000218103 
 
 
-
 
NC_008043  TM1040_3550  restriction modification system DNA specificity subunit  27.01 
 
 
417 aa  64.3  0.000000006  Ruegeria sp. TM1040  Bacteria  normal  0.257959  normal  0.256697 
 
 
-
 
NC_011061  Paes_2397  restriction modification system DNA specificity domain  28.64 
 
 
417 aa  63.9  0.000000007  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000238697  n/a   
 
 
-
 
NC_009429  Rsph17025_3533  Type I restriction-modification system methyltransferase subunit-like protein  43.37 
 
 
86 aa  64.3  0.000000007  Rhodobacter sphaeroides ATCC 17025  Bacteria  decreased coverage  0.000840506  normal 
 
 
-
 
NC_007519  Dde_3425  restriction endonuclease S subunits-like  28.02 
 
 
390 aa  63.9  0.000000008  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.835151  n/a   
 
 
-
 
NC_009712  Mboo_1032  restriction modification system DNA specificity subunit  24.26 
 
 
457 aa  63.9  0.000000008  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.41908  normal  0.322454 
 
 
-
 
NC_011901  Tgr7_0599  type I restriction-modification system, S subunit  31.08 
 
 
458 aa  63.2  0.00000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>