162 homologs were found in PanDaTox collection
for query gene Gura_1027 on replicon NC_009483
Organism: Geobacter uraniireducens Rf4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009483  Gura_1027  restriction modification system DNA specificity subunit  100 
 
 
420 aa  865    Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_1170  restriction modification system DNA specificity subunit  39.09 
 
 
402 aa  295  7e-79  Methanococcus maripaludis C5  Archaea  normal  0.249165  n/a   
 
 
-
 
NC_007908  Rfer_1060  restriction modification system DNA specificity subunit  39.2 
 
 
397 aa  261  2e-68  Rhodoferax ferrireducens T118  Bacteria  normal  0.588803  n/a   
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  29.45 
 
 
477 aa  162  7e-39  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_2086  restriction modification system DNA specificity domain protein  37 
 
 
417 aa  160  3e-38  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000683293 
 
 
-
 
NC_012912  Dd1591_4240  Restriction endonuclease S subunits-like protein  33.55 
 
 
436 aa  158  2e-37  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2097  restriction modification system DNA specificity subunit  30.49 
 
 
393 aa  156  5.0000000000000005e-37  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3089  restriction modification system DNA specificity domain protein  45.75 
 
 
520 aa  147  4.0000000000000006e-34  Spirosoma linguale DSM 74  Bacteria  normal  0.497517  normal  0.376247 
 
 
-
 
NC_011083  SeHA_C4714  restriction modification system DNA specificity domain  31.21 
 
 
380 aa  132  1.0000000000000001e-29  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.232226  normal 
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  40.62 
 
 
422 aa  129  8.000000000000001e-29  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_009974  Haur_5276  restriction modification system DNA specificity subunit  43.37 
 
 
418 aa  125  1e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  42.76 
 
 
420 aa  123  7e-27  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3540  restriction modification system DNA specificity subunit  25.51 
 
 
387 aa  121  1.9999999999999998e-26  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1502  restriction modification system DNA specificity domain  26.62 
 
 
393 aa  122  1.9999999999999998e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3653  type I restriction enzyme StySPI specificity protein  36.41 
 
 
460 aa  116  7.999999999999999e-25  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.234587  normal  0.701676 
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  34.31 
 
 
457 aa  111  2.0000000000000002e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  36.53 
 
 
456 aa  110  4.0000000000000004e-23  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  37.27 
 
 
616 aa  110  4.0000000000000004e-23  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0149  restriction modification system DNA specificity subunit  37.11 
 
 
400 aa  110  6e-23  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0504  restriction modification system DNA specificity domain protein  36.65 
 
 
408 aa  109  7.000000000000001e-23  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1954  restriction modification system DNA specificity subunit  38.1 
 
 
406 aa  109  1e-22  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3267  restriction modification system DNA specificity subunit  37.8 
 
 
557 aa  105  2e-21  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0920403  decreased coverage  0.00535253 
 
 
-
 
NC_004578  PSPTO_0006  type I restriction-modification system, S subunit, EcoA family  30.17 
 
 
435 aa  104  3e-21  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_04450  restriction modification system DNA specificity domain protein  24.94 
 
 
422 aa  103  5e-21  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2421  restriction modification system DNA specificity subunit  25.48 
 
 
402 aa  102  1e-20  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.318068 
 
 
-
 
NC_010803  Clim_0128  N-6 DNA methylase  35.22 
 
 
846 aa  100  4e-20  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0448  restriction modification system DNA specificity domain  33.68 
 
 
435 aa  100  5e-20  Ralstonia pickettii 12J  Bacteria  normal  hitchhiker  0.00000159098 
 
 
-
 
NC_012917  PC1_2875  restriction modification system DNA specificity domain protein  27.6 
 
 
390 aa  99  2e-19  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  33.52 
 
 
424 aa  95.5  2e-18  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  34.36 
 
 
438 aa  95.5  2e-18  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_009338  Mflv_0804  restriction modification system DNA specificity subunit  27.49 
 
 
368 aa  93.6  5e-18  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.526121  normal  0.427419 
 
 
-
 
NC_007298  Daro_1307  restriction modification system DNA specificity subunit  30.34 
 
 
285 aa  93.2  8e-18  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.186237 
 
 
-
 
NC_003909  BCE_0842  type I restriction-modification enzyme, S subunit, putative  24.83 
 
 
476 aa  89  1e-16  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1195  type II restriction-modification enzyme  34.95 
 
 
1343 aa  89  1e-16  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_4189  restriction modification system DNA specificity domain protein  23.56 
 
 
401 aa  89  1e-16  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0160  restriction modification system DNA specificity subunit  32.42 
 
 
399 aa  88.2  2e-16  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1311  restriction modification system DNA specificity subunit  37.71 
 
 
578 aa  87.8  3e-16  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007604  Synpcc7942_1064  type I restriction-modification  33.33 
 
 
453 aa  86.3  0.000000000000001  Synechococcus elongatus PCC 7942  Bacteria  hitchhiker  0.00000898872  normal  0.027841 
 
 
-
 
NC_007777  Francci3_0193  type I restriction-modification system specificity determinant  29.94 
 
 
416 aa  86.3  0.000000000000001  Frankia sp. CcI3  Bacteria  normal  normal  0.311495 
 
 
-
 
NC_013456  VEA_003235  type I restriction-modification system specificity subunit S  32.08 
 
 
437 aa  85.5  0.000000000000001  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3599  restriction modification system DNA specificity domain protein  28.51 
 
 
532 aa  85.9  0.000000000000001  Thauera sp. MZ1T  Bacteria  normal  0.743632  n/a   
 
 
-
 
NC_009049  Rsph17029_1858  restriction modification system DNA specificity subunit  31.52 
 
 
456 aa  84.3  0.000000000000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2346  restriction modification system DNA specificity subunit  24.4 
 
 
392 aa  82  0.00000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.104931  normal  0.0105772 
 
 
-
 
NC_013169  Ksed_13680  hypothetical protein  26.95 
 
 
354 aa  81.3  0.00000000000003  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.247083  normal  0.424884 
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  29.69 
 
 
425 aa  81.3  0.00000000000003  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_014148  Plim_1220  restriction modification system DNA specificity domain protein  26.4 
 
 
620 aa  80.5  0.00000000000005  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4252  restriction modification system DNA specificity domain protein  32.12 
 
 
462 aa  79.3  0.0000000000001  Dickeya zeae Ech1591  Bacteria  normal  0.132013  n/a   
 
 
-
 
NC_013093  Amir_0959  restriction modification system DNA specificity domain protein  32.1 
 
 
442 aa  79.3  0.0000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2028  restriction modification system DNA specificity subunit  26.24 
 
 
391 aa  77.8  0.0000000000003  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.000400239 
 
 
-
 
NC_008043  TM1040_3550  restriction modification system DNA specificity subunit  35.37 
 
 
417 aa  77.4  0.0000000000004  Ruegeria sp. TM1040  Bacteria  normal  0.257959  normal  0.256697 
 
 
-
 
NC_013161  Cyan8802_0727  restriction modification system DNA specificity domain protein  22.72 
 
 
400 aa  76.6  0.0000000000007  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0968972 
 
 
-
 
NC_011060  Ppha_1219  restriction modification system DNA specificity domain  25.67 
 
 
412 aa  76.6  0.0000000000008  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  30.11 
 
 
426 aa  76.6  0.0000000000008  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  30.11 
 
 
409 aa  76.3  0.0000000000009  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_009654  Mmwyl1_3199  restriction modification system DNA specificity subunit  27.34 
 
 
400 aa  76.3  0.0000000000009  Marinomonas sp. MWYL1  Bacteria  normal  0.365834  normal 
 
 
-
 
NC_011149  SeAg_B4821  type I restriction-modification system, endonuclease S subunit  29.05 
 
 
382 aa  76.3  0.000000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1452  restriction modification system DNA specificity domain  23.72 
 
 
392 aa  75.9  0.000000000001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.0462219  n/a   
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  30.25 
 
 
432 aa  75.9  0.000000000001  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_009051  Memar_1093  restriction modification system DNA specificity subunit  24.44 
 
 
394 aa  74.7  0.000000000003  Methanoculleus marisnigri JR1  Archaea  normal  0.614941  n/a   
 
 
-
 
NC_011071  Smal_1037  restriction modification system DNA specificity domain  36.36 
 
 
364 aa  73.9  0.000000000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0890662  normal 
 
 
-
 
NC_002947  PP_4742  type I restriction-modification system, S subunit  32.14 
 
 
576 aa  73.2  0.000000000009  Pseudomonas putida KT2440  Bacteria  normal  0.266617  hitchhiker  0.00441093 
 
 
-
 
NC_011662  Tmz1t_3180  restriction modification system DNA specificity domain protein  24.76 
 
 
390 aa  73.2  0.000000000009  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_0895  N-6 DNA methylase  32.3 
 
 
834 aa  72.4  0.00000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1496  restriction modification system DNA specificity domain protein  28.14 
 
 
427 aa  72  0.00000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.136919  normal 
 
 
-
 
NC_007955  Mbur_0508  restriction modification system DNA specificity subunit  29.63 
 
 
511 aa  72  0.00000000002  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  25.79 
 
 
429 aa  71.2  0.00000000003  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  33.33 
 
 
413 aa  71.2  0.00000000004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
CP001637  EcDH1_3649  restriction modification system DNA specificity domain protein  25.29 
 
 
464 aa  70.5  0.00000000005  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0599  type I restriction-modification system, S subunit  29.07 
 
 
458 aa  70.5  0.00000000005  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_20210  restriction modification system DNA specificity domain protein  29.63 
 
 
565 aa  70.1  0.00000000007  Halothermothrix orenii H 168  Bacteria  normal  0.266778  n/a   
 
 
-
 
NC_011663  Sbal223_0390  restriction modification system DNA specificity domain protein  25 
 
 
642 aa  70.1  0.00000000008  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.0000219621 
 
 
-
 
NC_011061  Paes_2397  restriction modification system DNA specificity domain  30.43 
 
 
417 aa  69.3  0.0000000001  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000238697  n/a   
 
 
-
 
NC_013440  Hoch_2792  restriction modification system DNA specificity domain protein  25.81 
 
 
423 aa  69.7  0.0000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.313089  normal 
 
 
-
 
NC_009832  Spro_4083  restriction modification system DNA specificity subunit  26.56 
 
 
409 aa  68.6  0.0000000002  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3010  restriction endonuclease S subunits-like protein  25 
 
 
388 aa  67.4  0.0000000004  Opitutus terrae PB90-1  Bacteria  normal  0.116402  normal  0.20864 
 
 
-
 
NC_007514  Cag_1122  restriction endonuclease S subunits-like  25.93 
 
 
428 aa  67  0.0000000007  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.878738  n/a   
 
 
-
 
NC_007519  Dde_3425  restriction endonuclease S subunits-like  25.5 
 
 
390 aa  66.6  0.0000000007  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.835151  n/a   
 
 
-
 
NC_009707  JJD26997_1911  hypothetical protein  24.24 
 
 
453 aa  66.2  0.000000001  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.568524  n/a   
 
 
-
 
NC_011206  Lferr_0227  restriction modification system DNA specificity domain  23.25 
 
 
395 aa  65.9  0.000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4810  putative type I restriction-modification system specificity subunit  36 
 
 
360 aa  65.9  0.000000001  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3129  restriction modification system DNA specificity subunit  30.6 
 
 
416 aa  65.5  0.000000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.343622  normal  0.0250234 
 
 
-
 
NC_011668  Sbal223_4454  restriction modification system DNA specificity domain protein  30.82 
 
 
406 aa  64.7  0.000000003  Shewanella baltica OS223  Bacteria  normal  0.859615  normal 
 
 
-
 
NC_008573  Shewana3_4241  restriction modification system DNA specificity subunit  22.75 
 
 
411 aa  63.9  0.000000004  Shewanella sp. ANA-3  Bacteria  normal  0.491612  hitchhiker  0.00127278 
 
 
-
 
NC_008751  Dvul_0487  restriction modification system DNA specificity subunit  27.33 
 
 
438 aa  63.9  0.000000005  Desulfovibrio vulgaris DP4  Bacteria  normal  0.700794  normal  0.0187002 
 
 
-
 
NC_009483  Gura_4042  restriction modification system DNA specificity subunit  27.03 
 
 
428 aa  63.9  0.000000005  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_22810  hypothetical protein  25.86 
 
 
418 aa  63.5  0.000000007  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.2219 
 
 
-
 
NC_009707  JJD26997_1851  type I restriction modification DNA specificity domain-containing protein  29.52 
 
 
194 aa  63.5  0.000000007  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5008  Restriction endonuclease S subunits-like protein  24.07 
 
 
465 aa  63.2  0.000000009  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.441656 
 
 
-
 
NC_008530  LGAS_0899  restriction endonuclease S subunit  20 
 
 
396 aa  62.8  0.00000001  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.0000000681459  hitchhiker  0.00000169581 
 
 
-
 
NC_008786  Veis_2423  restriction modification system DNA specificity subunit  30.14 
 
 
426 aa  62.4  0.00000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.57431  normal 
 
 
-
 
NC_009513  Lreu_1433  restriction modification system DNA specificity subunit  23.51 
 
 
372 aa  62.4  0.00000001  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2988  restriction modification system DNA specificity domain protein  25.96 
 
 
386 aa  62.4  0.00000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_7555  Restriction endonuclease S subunits-like protein  24.62 
 
 
402 aa  62  0.00000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_002967  TDE0368  type I restriction-modification system, S subunit, putative  29.88 
 
 
562 aa  61.2  0.00000003  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_008573  Shewana3_4163  restriction modification system DNA specificity subunit  28.32 
 
 
405 aa  61.2  0.00000003  Shewanella sp. ANA-3  Bacteria  normal  0.864984  normal  0.0584456 
 
 
-
 
NC_008576  Mmc1_0132  restriction modification system DNA specificity subunit  26.42 
 
 
427 aa  61.2  0.00000003  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.47299 
 
 
-
 
NC_011830  Dhaf_3953  restriction modification system DNA specificity domain protein  24.08 
 
 
413 aa  61.2  0.00000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1131  restriction modification system DNA specificity subunit  22.03 
 
 
413 aa  61.6  0.00000003  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0871  restriction modification system DNA specificity subunit  30.25 
 
 
211 aa  60.8  0.00000004  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0637  restriction modification system DNA specificity domain  24.75 
 
 
422 aa  60.8  0.00000004  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
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