Gene Rpal_1502 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1502 
Symbol 
ID6409160 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp1584699 
End bp1585880 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content54% 
IMG OID642711400 
Productrestriction modification system DNA specificity domain 
Protein accessionYP_001990515 
Protein GI192289910 
COG category[V] Defense mechanisms 
COG ID[COG0732] Restriction endonuclease S subunits 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACTATCC CTAAAGTCCC GCTTGGCGAA TTTGTTGAGA TCAAAGGGGG CGGAACACCA 
TCGAAATCCA ATGCGGCCTT TTGGGGTGGC AACATTCCTT GGGTCTCACC CAAGGACATG
AAGACCTGGG AGATTTGCGA CTCTGAAGAC AAGATCACGG CTGAGGCGGT AAGAGAAAGC
GCGACTAACC TGATCCCGCC GAATGCAACG CTCATCGTCA ACCGTTCTGG GATTTTGAAG
CACACTTTGC CCGTCGGAAT CACTCGGCGG CCCGTCGCAA TCAATCAAGA TATCAAGGCC
ATTCTGGTCA GCCCTCGTGC TCACCCAGAA TATGTGGCCC ACATTATCAA GGCCGCAGAG
CCGATCGTCC TGAAATGGGT TAGAGCAACG ACCGCTGACA ACTTCCCCAT CGACAACCTC
AGGGAGCTTG AAATCCCTCT TCCCCCGCTC GACGAGCAGC GGCGGATCGC GGCGATCCTG
GACAAGGCGG ATGCGCTGCG CCGCAAGCGC AAGCGCACGA TCGAATTGAT CGAATGCCTT
ATGCAGGCAA CCTATCGCAG GATGTTCGTT GAGCAAGCAT CGAACTCGTG GCCGAAGTGC
ACGGTAGCTT CGCTGGCACG CGACATCCGA ACCGGGCCGT TCGGCAGTCA GTTACTACAT
TCCGAATTTG TGGACGAAGG GATAGCCGTT CTTGGCATCG ATAATGTCGC AACGAACGAA
TTTCGCTGGG GGGAGCGACG ACACATCCCC GAAGAAAAAT ATGAGAAACT AAGGCGCTAC
ACCGTCTTTC CCGGGGACGT TCTTATTACC ATTATGGGAA CCTGCGGTCG CTGTGCAATT
GTGCCCGAAA ACATTCCTCT GGCGATAAAT ACCAAGCACC TTTGTTGTAT TACTTTAGAC
GAAGAGAAGT GTTTGCCAGA ATTCTTGCAG TCCACGTTCT TGCAACATCC GGATGTGCTC
CTCCAGCTTG GTGTCCAGGC TAAGGGGGCG GTGATGCCCG GTCTGAACAT GGGAATCATC
AAGTCTCTTC AGATCTCCTT GCCTCCGGTT CAGCTCCAGA GAGATTTCGT AATGAGGATT
TCGAAATTGC GGTCGACTTT GATTTCTTCA CGGCACTGGG AAGCAGAAGG AGAACTTCTC
TTCTCCTCCC TCCAACACCG CGCCTTTTCC GGCCAGCTTT GA
 
Protein sequence
MTIPKVPLGE FVEIKGGGTP SKSNAAFWGG NIPWVSPKDM KTWEICDSED KITAEAVRES 
ATNLIPPNAT LIVNRSGILK HTLPVGITRR PVAINQDIKA ILVSPRAHPE YVAHIIKAAE
PIVLKWVRAT TADNFPIDNL RELEIPLPPL DEQRRIAAIL DKADALRRKR KRTIELIECL
MQATYRRMFV EQASNSWPKC TVASLARDIR TGPFGSQLLH SEFVDEGIAV LGIDNVATNE
FRWGERRHIP EEKYEKLRRY TVFPGDVLIT IMGTCGRCAI VPENIPLAIN TKHLCCITLD
EEKCLPEFLQ STFLQHPDVL LQLGVQAKGA VMPGLNMGII KSLQISLPPV QLQRDFVMRI
SKLRSTLISS RHWEAEGELL FSSLQHRAFS GQL