| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1897 |
|---|
| Symbol | |
|---|
| ID | 4624908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 2307232 |
|---|
| End bp | 2309067 |
|---|
| Gene Length | 1836 bp |
|---|
| Protein Length | 611 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 639797069 |
|---|
| Product | restriction modification system DNA specificity subunit |
|---|
| Protein accession | YP_943271 |
|---|
| Protein GI | 119945591 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0732] Restriction endonuclease S subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00184495 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAAA AAACCAGTCA GCAAAAGAAT TCACTTAAAG ACGAGAAGAT TAAAAGCAGC
AGTATTGAAT CTTTAATTAC AGATAATATA GAGACCTGGA CATCAGCCGT TAAGAAAAAA
TCGGCAACAG GGCGAGGCTC AAATAAAAAA ATAGAATTGT ACGGTATTAA AAAACTGCGT
GAACTGATTT TAGAATTGGC GGTGCGCGGT AAGTTAGTAG CACAGGATGC TAATGATGAA
CCAGCTTCGG TTTTACTTGA ACGAATTGCA ACAGAAAAAG CGCAACTAGT TGCTGATAAT
AAAATAAAAA ATCAAAAAAC CTTACCAGCT ATTACTGATA AAGAAATGCC ATTTAATTTA
CCGGGTGGGT GGGCGTTTGA AAGATTAGGT AATTTAACTT CTAGATTGGG TTCCGGTAGC
ACACCTAGAG GTGGAAAAAA TGCATATGTT GATAAAGGAG TTATATTTTT ACGTTCTCAA
AATGTTTGGA ATGATGGTTT AAAACTTGAT GATACTGCAT ATATCTCGGA TGAAACGCAT
CATAAAATGG AAAATACGCG TGTATTTCCA AATGATGTCT TATTAAATAT CACAGGTGCA
TCACTTGGTC GTTCAACAAT TTTTCCCAAA GCTTTAGTAA CTGCAAATGT TAGTCAGCAT
GTGACAGTAA TAAGGTTAAT ACATCCAAGT ATTTGTCAGT ACTTACACTT AGCAATCATG
TCACCTTTAG TTCAAGAATT AGCTTGGGGA CGTCAAGTAG GCATGGCAAT AGAAGGGCTT
AGTAAAAAAG TATTAGAGCA ATTTGAATTT CCTGTCCCAC CATTAGAAGA ACAACACCGC
ATCGTTGCTA AAGTAGATGA ACTAATGTTG TTATGCGATC TGTTTGAACA GAAAACTGAA
TCCAGTATTG ATGCCCATAA AACCTTAGTG GAAGTATTAT TAACTACTTT AACCGACAGC
AAAAATTCCG ACGAGTTAAA TAAAAACTGG GCGCGGGTCA GTGAGTTTTT CGATATCCTT
TTTACAACAG AGCACAGTAT CGATCAGTTA AAGCAAACTA TCCTGCAGCT GGCCGTGATG
GGTAAACTGG TTGCACAGAA TGAAAATGAT GAACCCGCTT CAAAATTACT GGAACGTATC
GCCGCCGAAA AAGAAACACT GATTAAAGAT AAGAAAATAA AAAAACAAAA AGCATTACCG
CCTATTACGG ATGAAGAGAA ACCTTTTTCT GTACCAAGTG GGTGGGAGTG GTGTCGGATT
TATGATGCTT CATTATTTAC AGAATATGGA ACTTCAGAAA AAGCTTTTGA GGGTAATGAT
GGAGTTCCTG TTTTAAAAAT GGGAGATATA CAATCAGGTA AGGTTTATCA CGGAGGCCAA
AAAGTTGTCC CGTCAACTAT AAAAGACCTA CCTAATTTGT ATTTGAAATA TGGGGATATT
CTTTATAACC GAACTAATAG TGCTGAACTT GTAGGTAAAA CGGGTATGTT TGAAGGTGAT
GATGATATTT TTACATTTGC ATCATATCTG ATTCGTATTA GATGTGACTT TGAAAAAGTA
GCTCCTCAAT ACCTTACATT ATCAATGCAA ACTCCCTTGT TCAAAAAAAC TCAAATTGAT
CCGCATGTGA AGCAACAATG TGGGCAAGCT AATGTAAACG GTACCATTAT GAAAAGTATG
CTCATTTCCA TACCATCGCT ATCTGAGCAA TATCGCATTG TAAATAAAGT AGAAGAACTA
ATGACACTTT GTGATCAACT AAAAACCCGC TTAAACGAAT CCCAACAAAG CCAACTTCAT
CTAGCCGATG CACTTATTGA ACAGGCGGTA AATTAA
|
|---|
| Protein sequence | MQQKTSQQKN SLKDEKIKSS SIESLITDNI ETWTSAVKKK SATGRGSNKK IELYGIKKLR
ELILELAVRG KLVAQDANDE PASVLLERIA TEKAQLVADN KIKNQKTLPA ITDKEMPFNL
PGGWAFERLG NLTSRLGSGS TPRGGKNAYV DKGVIFLRSQ NVWNDGLKLD DTAYISDETH
HKMENTRVFP NDVLLNITGA SLGRSTIFPK ALVTANVSQH VTVIRLIHPS ICQYLHLAIM
SPLVQELAWG RQVGMAIEGL SKKVLEQFEF PVPPLEEQHR IVAKVDELML LCDLFEQKTE
SSIDAHKTLV EVLLTTLTDS KNSDELNKNW ARVSEFFDIL FTTEHSIDQL KQTILQLAVM
GKLVAQNEND EPASKLLERI AAEKETLIKD KKIKKQKALP PITDEEKPFS VPSGWEWCRI
YDASLFTEYG TSEKAFEGND GVPVLKMGDI QSGKVYHGGQ KVVPSTIKDL PNLYLKYGDI
LYNRTNSAEL VGKTGMFEGD DDIFTFASYL IRIRCDFEKV APQYLTLSMQ TPLFKKTQID
PHVKQQCGQA NVNGTIMKSM LISIPSLSEQ YRIVNKVEEL MTLCDQLKTR LNESQQSQLH
LADALIEQAV N
|
|---|
| |