More than 300 homologs were found in PanDaTox collection
for query gene Svir_16660 on replicon NC_013159
Organism: Saccharomonospora viridis DSM 43017



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013159  Svir_16660  ABC-type sugar transport system, periplasmic component  100 
 
 
406 aa  830    Saccharomonospora viridis DSM 43017  Bacteria  normal  0.613471  normal 
 
 
-
 
NC_013131  Caci_2170  extracellular solute-binding protein family 1  36.53 
 
 
428 aa  227  3e-58  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2365  extracellular solute-binding protein family 1  33.68 
 
 
416 aa  218  2e-55  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.618021 
 
 
-
 
NC_009668  Oant_3895  extracellular solute-binding protein  34.91 
 
 
411 aa  198  2.0000000000000003e-49  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0748  sugar ABC transporter, periplasmic sugar-binding protein, putative  34.11 
 
 
411 aa  197  3e-49  Brucella suis 1330  Bacteria  normal  0.537127  n/a   
 
 
-
 
NC_007952  Bxe_B0420  ABC sugar transporter, periplasmic ligand binding protein  30.73 
 
 
410 aa  178  2e-43  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0698  putative sugar ABC transporter, periplasmic sugar-binding protein  34.85 
 
 
366 aa  176  6e-43  Brucella ovis ATCC 25840  Bacteria  normal  0.436581  n/a   
 
 
-
 
NC_010676  Bphyt_7208  extracellular solute-binding protein family 1  31.06 
 
 
410 aa  171  3e-41  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4057  extracellular solute-binding protein  29.71 
 
 
410 aa  164  2.0000000000000002e-39  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  31.23 
 
 
424 aa  157  5.0000000000000005e-37  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_013521  Sked_02930  carbohydrate-binding protein  29.21 
 
 
426 aa  123  6e-27  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_19770  extracellular solute-binding protein family 1  27.34 
 
 
423 aa  118  1.9999999999999998e-25  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3712  extracellular solute-binding protein family 1  30.17 
 
 
421 aa  118  1.9999999999999998e-25  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.411366 
 
 
-
 
NC_013721  HMPREF0424_1316  extracellular solute-binding protein  26.6 
 
 
423 aa  117  5e-25  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  29.63 
 
 
422 aa  114  3e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010003  Pmob_0954  extracellular solute-binding protein  26.95 
 
 
399 aa  112  2.0000000000000002e-23  Petrotoga mobilis SJ95  Bacteria  normal  0.0450213  n/a   
 
 
-
 
NC_013235  Namu_0514  extracellular solute-binding protein family 1  26.51 
 
 
426 aa  110  5e-23  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3146  extracellular solute-binding protein  25.38 
 
 
424 aa  104  3e-21  Arthrobacter sp. FB24  Bacteria  normal  0.0629231  n/a   
 
 
-
 
NC_014210  Ndas_0659  extracellular solute-binding protein family 1  27.93 
 
 
425 aa  101  3e-20  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.579585  normal  0.728331 
 
 
-
 
NC_012848  Rleg_5213  extracellular solute-binding protein family 1  26.42 
 
 
415 aa  100  3e-20  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.506772 
 
 
-
 
NC_011899  Hore_00780  extracellular solute-binding protein family 1  25.06 
 
 
411 aa  101  3e-20  Halothermothrix orenii H 168  Bacteria  normal  0.0480859  n/a   
 
 
-
 
NC_011884  Cyan7425_2553  extracellular solute-binding protein family 1  25.7 
 
 
432 aa  100  6e-20  Cyanothece sp. PCC 7425  Bacteria  normal  0.964139  normal 
 
 
-
 
NC_011368  Rleg2_5476  extracellular solute-binding protein family 1  26.09 
 
 
415 aa  99.4  1e-19  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.487316 
 
 
-
 
NC_013174  Jden_0513  extracellular solute-binding protein family 1  29.14 
 
 
447 aa  99.4  1e-19  Jonesia denitrificans DSM 20603  Bacteria  decreased coverage  0.000000038068  hitchhiker  0.000703825 
 
 
-
 
NC_011899  Hore_04610  extracellular solute-binding protein family 1  24.4 
 
 
431 aa  98.2  2e-19  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_0803  extracellular solute-binding protein  28.57 
 
 
433 aa  98.6  2e-19  Salinispora tropica CNB-440  Bacteria  normal  0.437157  normal 
 
 
-
 
NC_009620  Smed_4916  extracellular solute-binding protein  24.61 
 
 
410 aa  98.6  2e-19  Sinorhizobium medicae WSM419  Bacteria  normal  0.06645  normal  0.512511 
 
 
-
 
NC_013521  Sked_03090  ABC-type sugar transport system, periplasmic component  29.77 
 
 
419 aa  98.2  2e-19  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.033461  normal 
 
 
-
 
NC_012669  Bcav_3775  extracellular solute-binding protein family 1  26.09 
 
 
459 aa  97.8  3e-19  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.137854  normal 
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  27.36 
 
 
420 aa  97.4  4e-19  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  26.49 
 
 
415 aa  97.1  5e-19  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0930087 
 
 
-
 
NC_013521  Sked_06340  maltose-binding periplasmic protein  27.36 
 
 
409 aa  97.1  5e-19  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.211092  normal 
 
 
-
 
NC_009616  Tmel_0690  extracellular solute-binding protein  27.7 
 
 
402 aa  96.7  7e-19  Thermosipho melanesiensis BI429  Bacteria  normal  0.678935  n/a   
 
 
-
 
NC_013521  Sked_21150  carbohydrate-binding protein  27.36 
 
 
428 aa  96.3  9e-19  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.396929  normal  0.174783 
 
 
-
 
NC_013530  Xcel_1371  extracellular solute-binding protein family 1  26.46 
 
 
438 aa  95.5  1e-18  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1138  extracellular solute-binding protein family 1  26.3 
 
 
423 aa  95.9  1e-18  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.443513  n/a   
 
 
-
 
NC_007413  Ava_3685  extracellular solute-binding protein  23.1 
 
 
432 aa  95.1  2e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  24.38 
 
 
414 aa  95.5  2e-18  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1020  extracellular solute-binding protein  23.9 
 
 
459 aa  95.1  2e-18  Clostridium thermocellum ATCC 27405  Bacteria  unclonable  0.0000000124434  n/a   
 
 
-
 
NC_009953  Sare_0747  extracellular solute-binding protein  27.61 
 
 
433 aa  95.5  2e-18  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00190936 
 
 
-
 
NC_013202  Hmuk_0944  extracellular solute-binding protein family 1  24.48 
 
 
433 aa  94.4  3e-18  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.322748 
 
 
-
 
NC_013161  Cyan8802_4213  extracellular solute-binding protein family 1  23.6 
 
 
426 aa  94  4e-18  Cyanothece sp. PCC 8802  Bacteria  normal  0.215316  normal 
 
 
-
 
NC_011726  PCC8801_4174  extracellular solute-binding protein family 1  23.6 
 
 
426 aa  94  4e-18  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_3572  extracellular solute-binding protein family 1  26.34 
 
 
427 aa  93.6  6e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.405751  normal 
 
 
-
 
NC_013595  Sros_9091  ABC-type sugar transport system periplasmic component-like protein  25.98 
 
 
422 aa  90.5  5e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  0.306335  normal 
 
 
-
 
NC_013205  Aaci_2049  extracellular solute-binding protein family 1  24.4 
 
 
438 aa  90.1  7e-17  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.266449  n/a   
 
 
-
 
NC_007604  Synpcc7942_2417  transcriptional regulator, ABC transporter  23.36 
 
 
421 aa  89.7  9e-17  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.0335393 
 
 
-
 
NC_008243  Meso_4520  extracellular solute-binding protein  23.91 
 
 
415 aa  89.4  1e-16  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4557  extracellular solute-binding protein  29.03 
 
 
412 aa  89.4  1e-16  Sinorhizobium medicae WSM419  Bacteria  normal  0.302395  normal 
 
 
-
 
NC_012880  Dd703_3270  extracellular solute-binding protein family 1  26.47 
 
 
435 aa  88.6  2e-16  Dickeya dadantii Ech703  Bacteria  normal  0.543416  n/a   
 
 
-
 
NC_013595  Sros_6192  ABC-type sugar transport system periplasmic component-like protein  23.9 
 
 
431 aa  88.6  2e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0222852  normal 
 
 
-
 
NC_009620  Smed_4644  extracellular solute-binding protein  26.22 
 
 
409 aa  87.8  3e-16  Sinorhizobium medicae WSM419  Bacteria  normal  0.0265502  normal  0.0904039 
 
 
-
 
NC_014165  Tbis_2714  extracellular solute-binding protein family 1  29.93 
 
 
414 aa  87.8  4e-16  Thermobispora bispora DSM 43833  Bacteria  normal  0.36636  normal 
 
 
-
 
NC_012669  Bcav_1522  extracellular solute-binding protein family 1  31.02 
 
 
421 aa  86.7  7e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.569671  normal 
 
 
-
 
NC_008346  Swol_0405  ABC-type sugar transport system periplasmic component-like protein  23.5 
 
 
438 aa  86.7  7e-16  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3386  extracellular solute-binding protein family 1  26.14 
 
 
440 aa  85.9  0.000000000000001  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3121  extracellular solute-binding protein family 1  32.34 
 
 
412 aa  85.5  0.000000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_0323  family 1 extracellular solute-binding protein  23.13 
 
 
432 aa  84.7  0.000000000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0845  extracellular solute-binding protein family 1  27.35 
 
 
435 aa  85.1  0.000000000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0631  extracellular solute-binding protein family 1  27.27 
 
 
435 aa  85.1  0.000000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2719  extracellular solute-binding protein family 1  24.94 
 
 
434 aa  85.1  0.000000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.233137 
 
 
-
 
NC_013172  Bfae_25450  ABC-type sugar transport system, periplasmic component  24.73 
 
 
430 aa  84.7  0.000000000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0772443  n/a   
 
 
-
 
NC_014151  Cfla_3054  extracellular solute-binding protein family 1  27.12 
 
 
429 aa  84.7  0.000000000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.0183103 
 
 
-
 
NC_013595  Sros_4988  extracellular solute-binding protein  27.08 
 
 
414 aa  84.3  0.000000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.601947  normal 
 
 
-
 
NC_012850  Rleg_3393  extracellular solute-binding protein family 1  30.93 
 
 
412 aa  84.3  0.000000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.205631 
 
 
-
 
NC_010816  BLD_1874  MalE-type ABC sugar transport system periplasmic component  25.53 
 
 
427 aa  84  0.000000000000004  Bifidobacterium longum DJO10A  Bacteria  normal  0.0756635  n/a   
 
 
-
 
NC_013946  Mrub_0045  extracellular solute-binding protein family 1  24.59 
 
 
414 aa  84  0.000000000000005  Meiothermus ruber DSM 1279  Bacteria  normal  0.713374  normal 
 
 
-
 
NC_013172  Bfae_15380  ABC-type sugar transport system, periplasmic component  25.85 
 
 
465 aa  83.6  0.000000000000005  Brachybacterium faecium DSM 4810  Bacteria  normal  0.479356  n/a   
 
 
-
 
NC_011884  Cyan7425_4083  extracellular solute-binding protein family 1  26.98 
 
 
417 aa  83.6  0.000000000000006  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2683  extracellular solute-binding protein family 1  23.6 
 
 
446 aa  83.2  0.000000000000007  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.50155  normal 
 
 
-
 
NC_011371  Rleg2_6572  extracellular solute-binding protein family 1  23.77 
 
 
410 aa  82.8  0.000000000000009  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00103217  normal  0.480926 
 
 
-
 
NC_007413  Ava_4289  extracellular solute-binding protein  25.13 
 
 
466 aa  82.4  0.00000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6156  extracellular solute-binding protein family 1  23.34 
 
 
410 aa  82.4  0.00000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.889741  hitchhiker  0.000305646 
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  28.23 
 
 
427 aa  82.4  0.00000000000001  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5074  extracellular solute-binding protein family 1  24.88 
 
 
447 aa  82.4  0.00000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013171  Apre_0238  extracellular solute-binding protein family 1  22.67 
 
 
423 aa  82.4  0.00000000000001  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_18880  carbohydrate-binding protein  28.75 
 
 
460 aa  82.8  0.00000000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.141989  normal  0.173455 
 
 
-
 
NC_010003  Pmob_0523  extracellular solute-binding protein  22.81 
 
 
416 aa  82  0.00000000000002  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_4051  extracellular solute-binding protein family 1  28.28 
 
 
434 aa  80.9  0.00000000000004  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3052  extracellular solute-binding protein family 1  26.41 
 
 
427 aa  80.9  0.00000000000004  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.854825  normal  0.208902 
 
 
-
 
NC_013131  Caci_6732  extracellular solute-binding protein family 1  26.41 
 
 
425 aa  80.9  0.00000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.255639  normal 
 
 
-
 
NC_011988  Avi_5398  ABC transporter substrate binding protein (sugar)  24.22 
 
 
403 aa  79.7  0.00000000000008  Agrobacterium vitis S4  Bacteria  normal  0.14652  n/a   
 
 
-
 
NC_006274  BCZK1634  sugar ABC transporter, sugar-binding protein  25.17 
 
 
416 aa  79.7  0.00000000000009  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0403  extracellular solute-binding protein family 1  26.04 
 
 
426 aa  79.3  0.0000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.512139  n/a   
 
 
-
 
NC_013526  Tter_2303  extracellular solute-binding protein family 1  30.93 
 
 
480 aa  79  0.0000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.316955  n/a   
 
 
-
 
NC_007413  Ava_1229  extracellular solute-binding protein  22.69 
 
 
461 aa  79.3  0.0000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0257979  normal  0.868479 
 
 
-
 
NC_013172  Bfae_06270  ABC-type sugar transport system, periplasmic component  29.04 
 
 
426 aa  79  0.0000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5667  extracellular solute-binding protein family 1  22.99 
 
 
410 aa  79.3  0.0000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2731  extracellular solute-binding protein family 1  24.14 
 
 
454 aa  79  0.0000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011988  Avi_6240  ABC transporter substrate binding protein (maltose)  24.6 
 
 
407 aa  78.2  0.0000000000002  Agrobacterium vitis S4  Bacteria  normal  0.0994607  n/a   
 
 
-
 
NC_009050  Rsph17029_3409  extracellular solute-binding protein  26.39 
 
 
404 aa  78.6  0.0000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.280364  normal  0.614723 
 
 
-
 
NC_013517  Sterm_4038  extracellular solute-binding protein family 1  22.32 
 
 
405 aa  78.6  0.0000000000002  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1899  extracellular solute-binding protein, putative  24.83 
 
 
416 aa  78.2  0.0000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  0.41529  n/a   
 
 
-
 
NC_007494  RSP_3674  ABC sugar transporter, periplasmic binding protein  26.37 
 
 
404 aa  77.8  0.0000000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  24.55 
 
 
441 aa  78.2  0.0000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0913  extracellular solute-binding protein family 1  25.54 
 
 
421 aa  77.8  0.0000000000003  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2297  extracellular solute-binding protein  29.55 
 
 
416 aa  78.2  0.0000000000003  Serratia proteamaculans 568  Bacteria  normal  0.33558  normal 
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  22.67 
 
 
407 aa  77.8  0.0000000000003  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_0200  extracellular solute-binding protein family 1  23.59 
 
 
441 aa  77.4  0.0000000000004  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3276  extracellular solute-binding protein family 1  24.4 
 
 
420 aa  77.4  0.0000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  0.147153  normal  0.336546 
 
 
-
 
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