Gene Svir_16660 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_16660 
Symbol 
ID8386998 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1719763 
End bp1720983 
Gene Length1221 bp 
Protein Length406 aa 
Translation table11 
GC content64% 
IMG OID644975742 
ProductABC-type sugar transport system, periplasmic component 
Protein accessionYP_003133526 
Protein GI257055694 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.613471 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACAAGAC GATCGCGGGC CACTGCCCTG GTCGCGGCGA CCGCGATAGC GCTCACCGCC 
TGCTCGGGCG GAGGCTCGGA CGACGGCAGT GTCGAACTGA CGATGCTCGC GGCGTCCTAT
TCGGACAACA CGAAGAAGCT CTGGGAGGAG GTGATCGCAG AGTTCGAGGA CGCCAACCCG
GGCGTGACCG TCAACCTGGA GATCCAGTCG TGGGAGAACA TCAACGACGT CATCCGCACG
CGGGTGCAGA CGAACAAAGC CCCCGACATC CTGAGCATCG ACACCTTCGC CGGGTACGTG
GAGGACGACC TGTTGTACTC GGCTGACGAG TTGGTGTCGC AGGAGACGAT CGACGACTTC
CAGGATTCCT TCCGGGAGAA CGCCTCCGTC GACGGCAAAC AGTACGGCTT CCCCCTGATC
GCCTCGGCGA GGGCCCTGTT CGTCAACGAC GACCTGCTGG AGCAGGCGGG CGTCGAAGAA
CCGCCCACGA CCTGGGACGA GCTGTACGAC GCGGCGAAGG CGATCACCGA ATCCACCGAC
GCCTACGGCT ACGGTCTCCC GCTCGGGTCG GAGGAATCGC AGGCCGAGGC GGGAATCTGG
TTCCTCGGCG CGGGCGGCGG CTACGGCACG CCGGACAAGA TCACCGTGGA CACGCCCCAG
AACCTGGAGG CGGCGCGGTT CATGAAGCGC CTCTACGACG ACGGCTTGAC CCAGCCCGAC
GCCGGAGCCA CCCAGCGCAC TCCCATGCTG GACCAGTTCA TCCAGGGCAA ATTCGGCATG
GCGATGGGTC TTCCACCGAT CGTGGGCATG ATCGAGGAGA AGAACCCCGA CCTGAATTAC
TCCATCGTGG ACATTCCCAC GAAGGACGGC GAGAAGGTGA CGTTGGGTGT GGCCGACCAC
CTCATGGCCT TCCGCAACGA CGAGGACAAG ACGGAGGAGA TCGGGGCGTT CCTCGAATTC
TTCTACCAGC CGGAGAACTA CCTGAAGTTC GTCGAGACCG AGGGTTTCCT GCCCGTCACC
AAGTCCGGCG CGGAGGAGAG CACCGACGAG GCCATGAAAC CGTTCCTCGA ACTGTTGCCC
CACGCGCAGT TCTACCCGTC GACCAACCCC GCGTGGGCCA CTGCCCAGGC GGCCATGCAG
TCACAGATCG GGTTGATCGT CTCGGGTGAC GACCCGAAAC AGGTGTTGTC CGCCATCCAA
GCCGAGATCG ACAACGCCTG A
 
Protein sequence
MTRRSRATAL VAATAIALTA CSGGGSDDGS VELTMLAASY SDNTKKLWEE VIAEFEDANP 
GVTVNLEIQS WENINDVIRT RVQTNKAPDI LSIDTFAGYV EDDLLYSADE LVSQETIDDF
QDSFRENASV DGKQYGFPLI ASARALFVND DLLEQAGVEE PPTTWDELYD AAKAITESTD
AYGYGLPLGS EESQAEAGIW FLGAGGGYGT PDKITVDTPQ NLEAARFMKR LYDDGLTQPD
AGATQRTPML DQFIQGKFGM AMGLPPIVGM IEEKNPDLNY SIVDIPTKDG EKVTLGVADH
LMAFRNDEDK TEEIGAFLEF FYQPENYLKF VETEGFLPVT KSGAEESTDE AMKPFLELLP
HAQFYPSTNP AWATAQAAMQ SQIGLIVSGD DPKQVLSAIQ AEIDNA