More than 300 homologs were found in PanDaTox collection
for query gene Rsph17029_3409 on replicon NC_009050
Organism: Rhodobacter sphaeroides ATCC 17029



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007494  RSP_3674  ABC sugar transporter, periplasmic binding protein  99.5 
 
 
404 aa  831    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3409  extracellular solute-binding protein  100 
 
 
404 aa  833    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.280364  normal  0.614723 
 
 
-
 
NC_009636  Smed_0186  extracellular solute-binding protein  64.39 
 
 
397 aa  499  1e-140  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5698  extracellular solute-binding protein family 1  30.85 
 
 
412 aa  164  2.0000000000000002e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.145305  normal  0.141272 
 
 
-
 
NC_013093  Amir_1846  extracellular solute-binding protein family 1  30.79 
 
 
425 aa  160  5e-38  Actinosynnema mirum DSM 43827  Bacteria  normal  0.169612  n/a   
 
 
-
 
NC_013595  Sros_1494  ABC-type sugar transport system periplasmic component-like protein  29.08 
 
 
438 aa  139  7.999999999999999e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  29.57 
 
 
414 aa  137  3.0000000000000003e-31  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1090  extracellular solute-binding protein family 1  28.57 
 
 
436 aa  129  1.0000000000000001e-28  Thermobispora bispora DSM 43833  Bacteria  normal  0.667729  normal  0.0232634 
 
 
-
 
NC_009636  Smed_2420  extracellular solute-binding protein  27.92 
 
 
420 aa  123  5e-27  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.228974 
 
 
-
 
NC_011366  Rleg2_5852  extracellular solute-binding protein family 1  26 
 
 
419 aa  123  7e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6765  extracellular solute-binding protein family 1  26.51 
 
 
419 aa  122  9e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.979933  normal 
 
 
-
 
NC_009667  Oant_0354  extracellular solute-binding protein  26.78 
 
 
419 aa  118  1.9999999999999998e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.188589  n/a   
 
 
-
 
NC_011899  Hore_00780  extracellular solute-binding protein family 1  28.5 
 
 
411 aa  114  2.0000000000000002e-24  Halothermothrix orenii H 168  Bacteria  normal  0.0480859  n/a   
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  27.44 
 
 
407 aa  110  5e-23  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_007802  Jann_3553  extracellular solute-binding protein  25.4 
 
 
419 aa  108  1e-22  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  30.74 
 
 
422 aa  101  3e-20  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_014213  Mesil_3422  ABC-type sugar transport systems permease component  28.24 
 
 
410 aa  100  7e-20  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3226  Transcriptional regulator  28.24 
 
 
410 aa  100  7e-20  Meiothermus silvanus DSM 9946  Bacteria  normal  0.101031  normal 
 
 
-
 
NC_014211  Ndas_5074  extracellular solute-binding protein family 1  30 
 
 
447 aa  95.5  1e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4289  extracellular solute-binding protein  27.12 
 
 
466 aa  95.1  2e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3895  extracellular solute-binding protein  28.38 
 
 
411 aa  95.1  2e-18  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  27.49 
 
 
424 aa  94.7  3e-18  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_012669  Bcav_3775  extracellular solute-binding protein family 1  27.91 
 
 
459 aa  93.2  8e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.137854  normal 
 
 
-
 
NC_013745  Htur_4488  extracellular solute-binding protein family 1  35.39 
 
 
434 aa  93.2  8e-18  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.395657  n/a   
 
 
-
 
NC_013946  Mrub_0045  extracellular solute-binding protein family 1  26.45 
 
 
414 aa  92.4  1e-17  Meiothermus ruber DSM 1279  Bacteria  normal  0.713374  normal 
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  25.77 
 
 
415 aa  91.3  3e-17  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0930087 
 
 
-
 
NC_008010  Dgeo_2726  extracellular solute-binding protein  28.23 
 
 
437 aa  90.5  4e-17  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.290956  n/a   
 
 
-
 
NC_011071  Smal_2683  extracellular solute-binding protein family 1  27.45 
 
 
446 aa  90.9  4e-17  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.50155  normal 
 
 
-
 
NC_004311  BRA0748  sugar ABC transporter, periplasmic sugar-binding protein, putative  28.18 
 
 
411 aa  90.5  5e-17  Brucella suis 1330  Bacteria  normal  0.537127  n/a   
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  25.42 
 
 
427 aa  90.5  5e-17  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1229  extracellular solute-binding protein  28.06 
 
 
461 aa  90.1  7e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0257979  normal  0.868479 
 
 
-
 
NC_009504  BOV_A0698  putative sugar ABC transporter, periplasmic sugar-binding protein  28.18 
 
 
366 aa  90.1  7e-17  Brucella ovis ATCC 25840  Bacteria  normal  0.436581  n/a   
 
 
-
 
NC_010003  Pmob_0473  extracellular solute-binding protein  24.28 
 
 
420 aa  89.7  7e-17  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4083  extracellular solute-binding protein family 1  26.97 
 
 
417 aa  89  1e-16  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4916  extracellular solute-binding protein  26.09 
 
 
410 aa  89  1e-16  Sinorhizobium medicae WSM419  Bacteria  normal  0.06645  normal  0.512511 
 
 
-
 
NC_011884  Cyan7425_3276  extracellular solute-binding protein family 1  27.08 
 
 
420 aa  89  1e-16  Cyanothece sp. PCC 7425  Bacteria  normal  0.147153  normal  0.336546 
 
 
-
 
NC_007644  Moth_1484  extracellular solute-binding protein  27.45 
 
 
444 aa  88.2  2e-16  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.00000000000980441  normal 
 
 
-
 
NC_013525  Tter_0829  extracellular solute-binding protein family 1  29.39 
 
 
504 aa  87.8  3e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_5738  ABC-type sugar transport system periplasmic component-like protein  27.09 
 
 
452 aa  86.7  7e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  0.599702  normal  0.0824986 
 
 
-
 
NC_011899  Hore_04610  extracellular solute-binding protein family 1  26.28 
 
 
431 aa  85.5  0.000000000000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2703  extracellular solute-binding protein family 1  26.38 
 
 
450 aa  85.9  0.000000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000000263225  n/a   
 
 
-
 
NC_013595  Sros_3538  Maltose-binding periplasmic protein/domains- like protein  25.77 
 
 
406 aa  86.3  0.000000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.385239  normal 
 
 
-
 
NC_013595  Sros_7725  ABC-type sugar transport system periplasmic component-like protein  26.87 
 
 
420 aa  85.5  0.000000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_0753  extracellular solute-binding protein  24.77 
 
 
429 aa  83.6  0.000000000000006  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00037903  n/a   
 
 
-
 
NC_007413  Ava_3042  extracellular solute-binding protein  26.44 
 
 
406 aa  83.2  0.000000000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0658677  normal 
 
 
-
 
NC_010676  Bphyt_7208  extracellular solute-binding protein family 1  27.81 
 
 
410 aa  82.4  0.00000000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011370  Rleg2_6090  extracellular solute-binding protein family 1  24.93 
 
 
425 aa  81.6  0.00000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_16660  ABC-type sugar transport system, periplasmic component  26.72 
 
 
406 aa  81.3  0.00000000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.613471  normal 
 
 
-
 
NC_013739  Cwoe_3983  extracellular solute-binding protein family 1  26.63 
 
 
456 aa  80.5  0.00000000000004  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0420  ABC sugar transporter, periplasmic ligand binding protein  27.76 
 
 
410 aa  80.5  0.00000000000004  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00880  ABC transporter sugar binding protein  24.78 
 
 
440 aa  80.5  0.00000000000006  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.106592  n/a   
 
 
-
 
NC_010524  Lcho_3240  extracellular solute-binding protein  25.97 
 
 
434 aa  80.1  0.00000000000007  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010465  YPK_3709  extracellular solute-binding protein  25.75 
 
 
437 aa  79.7  0.00000000000008  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3575  carbohydrate ABC transporter periplasmic-binding protein  25.75 
 
 
437 aa  79.7  0.00000000000008  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A4016  carbohydrate ABC transporter periplasmic-binding protein  25.75 
 
 
437 aa  79.7  0.00000000000008  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_0944  extracellular solute-binding protein family 1  25.45 
 
 
433 aa  79.7  0.00000000000009  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.322748 
 
 
-
 
NC_013174  Jden_0381  extracellular solute-binding protein family 1  25.71 
 
 
445 aa  79  0.0000000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  0.491759  normal 
 
 
-
 
NC_013530  Xcel_1371  extracellular solute-binding protein family 1  24.52 
 
 
438 aa  77.8  0.0000000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2082  carbohydrate ABC transporter periplasmic-binding protein  25.59 
 
 
422 aa  77.4  0.0000000000004  Yersinia pestis Angola  Bacteria  normal  0.890991  normal  0.0137332 
 
 
-
 
NC_012669  Bcav_3572  extracellular solute-binding protein family 1  23.75 
 
 
427 aa  77.8  0.0000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.405751  normal 
 
 
-
 
NC_009486  Tpet_0322  extracellular solute-binding protein  25 
 
 
419 aa  77.4  0.0000000000005  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2504  extracellular solute-binding protein family 1  24.4 
 
 
442 aa  77  0.0000000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0721  extracellular solute-binding protein  25.07 
 
 
437 aa  76.6  0.0000000000008  Petrotoga mobilis SJ95  Bacteria  normal  0.540981  n/a   
 
 
-
 
NC_013739  Cwoe_5097  extracellular solute-binding protein family 1  25.08 
 
 
444 aa  75.9  0.000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.59554 
 
 
-
 
NC_012850  Rleg_3430  extracellular solute-binding protein family 1  25.82 
 
 
415 aa  75.9  0.000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_0397  extracellular solute-binding protein  26.91 
 
 
428 aa  75.9  0.000000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0358  extracellular solute-binding protein family 1  26.11 
 
 
441 aa  75.5  0.000000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_0298  extracellular solute-binding protein  25.14 
 
 
486 aa  76.3  0.000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2280  extracellular solute-binding protein  25.33 
 
 
422 aa  75.5  0.000000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0523  extracellular solute-binding protein  25.43 
 
 
416 aa  75.5  0.000000000002  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0340  extracellular solute-binding protein  25.36 
 
 
419 aa  75.1  0.000000000002  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2417  transcriptional regulator, ABC transporter  23.06 
 
 
421 aa  74.3  0.000000000003  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.0335393 
 
 
-
 
NC_008541  Arth_3387  extracellular solute-binding protein  23.87 
 
 
447 aa  74.7  0.000000000003  Arthrobacter sp. FB24  Bacteria  normal  0.278202  n/a   
 
 
-
 
NC_011899  Hore_19770  extracellular solute-binding protein family 1  26.51 
 
 
423 aa  74.7  0.000000000003  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5398  ABC transporter substrate binding protein (sugar)  26.09 
 
 
403 aa  74.7  0.000000000003  Agrobacterium vitis S4  Bacteria  normal  0.14652  n/a   
 
 
-
 
NC_009718  Fnod_0188  extracellular solute-binding protein  25.42 
 
 
420 aa  74.7  0.000000000003  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0954  extracellular solute-binding protein  24.43 
 
 
399 aa  74.3  0.000000000004  Petrotoga mobilis SJ95  Bacteria  normal  0.0450213  n/a   
 
 
-
 
NC_012852  Rleg_6156  extracellular solute-binding protein family 1  25.23 
 
 
410 aa  74.3  0.000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.889741  hitchhiker  0.000305646 
 
 
-
 
NC_009667  Oant_2485  extracellular solute-binding protein  25.52 
 
 
415 aa  73.9  0.000000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00421769  n/a   
 
 
-
 
NC_013526  Tter_2474  extracellular solute-binding protein family 1  27.33 
 
 
484 aa  73.9  0.000000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000108946  n/a   
 
 
-
 
NC_009708  YpsIP31758_2172  carbohydrate ABC transporter periplasmic-binding protein  25.13 
 
 
422 aa  73.6  0.000000000005  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.00849198  n/a   
 
 
-
 
NC_011831  Cagg_2267  extracellular solute-binding protein family 1  27.48 
 
 
445 aa  73.6  0.000000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00064551 
 
 
-
 
NC_014212  Mesil_1170  extracellular solute-binding protein family 1  26.61 
 
 
397 aa  73.2  0.000000000008  Meiothermus silvanus DSM 9946  Bacteria  normal  0.441465  normal  0.43389 
 
 
-
 
NC_011371  Rleg2_6572  extracellular solute-binding protein family 1  24.92 
 
 
410 aa  73.2  0.000000000009  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00103217  normal  0.480926 
 
 
-
 
NC_012669  Bcav_2819  extracellular solute-binding protein family 1  24.72 
 
 
461 aa  72.8  0.000000000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.491227  normal 
 
 
-
 
NC_013159  Svir_11620  ABC-type sugar transport system, periplasmic component  26.67 
 
 
426 aa  72.4  0.00000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0446  extracellular solute-binding protein family 1  26.86 
 
 
424 aa  72.4  0.00000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.900099  n/a   
 
 
-
 
NC_010681  Bphyt_3246  extracellular solute-binding protein family 1  27.95 
 
 
440 aa  72.4  0.00000000001  Burkholderia phytofirmans PsJN  Bacteria  decreased coverage  0.00178427  normal  0.716937 
 
 
-
 
NC_009921  Franean1_3944  extracellular solute-binding protein  26.22 
 
 
464 aa  72.4  0.00000000001  Frankia sp. EAN1pec  Bacteria  normal  0.920276  normal  0.0416082 
 
 
-
 
NC_010511  M446_6664  extracellular solute-binding protein  28.7 
 
 
452 aa  72.4  0.00000000001  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0689323 
 
 
-
 
NC_002977  MCA1941  sugar ABC transporter, sugar-binding protein, putative  23.94 
 
 
434 aa  72  0.00000000002  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0289  extracellular solute-binding protein  24.51 
 
 
437 aa  71.6  0.00000000002  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000019091  n/a   
 
 
-
 
NC_007413  Ava_3685  extracellular solute-binding protein  25 
 
 
432 aa  72.4  0.00000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  32.59 
 
 
420 aa  71.6  0.00000000002  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
NC_011884  Cyan7425_2553  extracellular solute-binding protein family 1  23.5 
 
 
432 aa  71.6  0.00000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.964139  normal 
 
 
-
 
NC_013093  Amir_4241  extracellular solute-binding protein family 1  26.79 
 
 
422 aa  71.2  0.00000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2294  extracellular solute-binding protein family 1  25 
 
 
448 aa  71.2  0.00000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_1607  ABC transporter sugar-binding protein  25.21 
 
 
430 aa  71.2  0.00000000003  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_0747  extracellular solute-binding protein  25.91 
 
 
433 aa  71.2  0.00000000003  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00190936 
 
 
-
 
NC_012669  Bcav_1296  extracellular solute-binding protein family 1  27.46 
 
 
443 aa  70.9  0.00000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.190784  normal 
 
 
-
 
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