Gene Svir_11620 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_11620 
Symbol 
ID8386499 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1194432 
End bp1195712 
Gene Length1281 bp 
Protein Length426 aa 
Translation table11 
GC content67% 
IMG OID644975252 
ProductABC-type sugar transport system, periplasmic component 
Protein accessionYP_003133045 
Protein GI257055213 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTGGCAC TCGCCGCGGC CACCGCCTTG ACGGTGACCG CGTGCAGCGA GTCGGCCACG 
GACCAAAGCG ACGCGGCGGA GCGGGCGGCC AACGACCCCC AGTCCGTGAC GGGCACCGTC
ACGTTCTGGG ACACCTCGGA CGCCACCAGC GAATCGCCCG CCTACAAAGA GCTGGTCAAG
CGGTTCGAGG AGAAGTACCC GAAGATCACC GTCGACTACG TCAACGTCCC GTTCGACGGG
GCGGACGACA AGTTCAAGAC CGCCGCGGCC AGCGGTGACG GCGCACCCGA CGTCATGCGG
TCGGACGTGG GCTGGACCCC CACCTTCGCC GCGCTCGGCT ACCTCCAGCC GCTCGACGGC
ACACCCGCGC TGGAGGGCTC CGACGACTAC CTTCCGGTGC CGATGGCCAG CAACGTCTAC
GAGGACAAGA CCTACGGTGT TCCGCAGGTG ACCGACACGC TCGCCCTGCT GTACAACAAG
GAGCACTTCG ACAAGGCCGG CATCGACGAG CCACCCTCCA CATGGGAGGA ACTGCGCAAG
GCGGCGGAGA CCCTGGAGGA GAAGATCCCG GGCACCACGG GCATCTTCAT CAACGCCGAC
TCCTACTACC TGCTGCCGTT CGTCTACGGC GAGGGCGCCG ACTACGTCGA CACCGAGGGC
GAGCGCATCA CCATCGACAG CCCCGAGGTG AAGGCCGCCA TCGAGACCGT GCGCGAGCTG
ACCGCCGACG GTGTGGGCAC CACCGACACG AGCGCGAACA AGTACACCAA CATGGTGGAC
GGCTTCAAGA ACGGGTCCAT CAGCATGATC ATCAACGGCC CGTGGTCGAT GTCCGACACC
CTCACCGGTA AGGCCTTCTC CGACCCCGAC AACCTCGGCG TCGCACCGGT TCCCGCCGGA
CCCAAGGGCC AAGGCGGCCC GGTGGGCGGC CACAACTACA CCATCTACGC GGGCTCGGAC
AACCTCGCCG CCTCCTACCT GTTCGTGCAG TTCATGAACT CGCCCGAAAG CCAGGCCTAC
GTGGCGGCAC AGAACAACAC GCTGCCGACC CGGGAATCCG TCTACGAGGT TCCCGAGGTG
GCGGACAACG AGGTGATCGA GGCCTTCGCC GAGCCGATCG AACAGGCTGT ACCACGGCCG
CCCGCACCCG GCGCCGGAAC GCTGTACGAC CTGTTCACGC CGTTCTACGA GCAGATCCTC
GGCGGCCAGA CCTCACTCGA GGACGGCTTG GCGCAGGCGC AGCGTAAGGC GAAGGACGCG
GTGCCGGGCT ACGAGTCATG A
 
Protein sequence
MLALAAATAL TVTACSESAT DQSDAAERAA NDPQSVTGTV TFWDTSDATS ESPAYKELVK 
RFEEKYPKIT VDYVNVPFDG ADDKFKTAAA SGDGAPDVMR SDVGWTPTFA ALGYLQPLDG
TPALEGSDDY LPVPMASNVY EDKTYGVPQV TDTLALLYNK EHFDKAGIDE PPSTWEELRK
AAETLEEKIP GTTGIFINAD SYYLLPFVYG EGADYVDTEG ERITIDSPEV KAAIETVREL
TADGVGTTDT SANKYTNMVD GFKNGSISMI INGPWSMSDT LTGKAFSDPD NLGVAPVPAG
PKGQGGPVGG HNYTIYAGSD NLAASYLFVQ FMNSPESQAY VAAQNNTLPT RESVYEVPEV
ADNEVIEAFA EPIEQAVPRP PAPGAGTLYD LFTPFYEQIL GGQTSLEDGL AQAQRKAKDA
VPGYES