| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5398 |
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| Symbol | |
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| ID | 7381501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 399009 |
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| End bp | 400220 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649009 |
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| Product | ABC transporter substrate binding protein (sugar) |
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| Protein accession | YP_002547246 |
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| Protein GI | 222106455 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.14652 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATCGCTG TGCTGGCTCT TGCCACGGCT TGCCCGCTTG CATCGACCGC CCGGGCGGAC
GACGTGACAC TCAATCTCTG GTCGCTCGAC AAGGATATCC AGCCGGCACC CAATCTGGTC
AAGCAATTCA ACGCGCTCAA CAATGGCATC AAGATCGAGT ATCGGCTCCT TCAGTTCGAC
GATGTCGTGA CGGAAGCGAT GCGCGCCTAT TCAACCGGTC AGGCGCCAGA TATCATTGCG
GTCGATAATC CGGAACATGC GCTGTTTGCC TCACGGGGCG CCTTCCTTGA TCTTACCGAC
ATGATCGCCA AGTCGGATGT GATCAAGCCC GCGAACTATT TTCCGGGGCC GTTGGCGTCT
GTGACCTGGA AAGACCGCTA TTTCGGCGTG CCGAAAGCCA CCAACACCAT CGCGCTCTAC
TATAACCGCG ATATGTTCAA GGCTAAGGGT CTCGATCCAC TCAAGCCACC GCAGACCTGG
GACGAACTTC TGGCCGCTGC CCGCAAGCTG AACGACCCGG CCAAGAATGT CTACGGCCTC
GCGTTTTCCG CCAAGGCCAG TGAAGAGGGA ACGTTCCAAT TCCTGCCCTG GGCGCAGATG
GGTGGCGGCG GTTATGACCA TATCAATGCT CCGGGCGCGG TAAAGGCGCT GGAGACCTGG
AAAACCATCA TGACCGAAAA ACTGGCCTCG CCGGATACGC TAACGCGCGG CCAGTGGGAT
TCGACCGGCA CGTTTAATTC CGGCAATGCC GCCATGGCGA TTTCGGGTCC TTGGGAGCTG
GACCGGATGC TGAAAGAGGC CAAATTCGAC TGGGGTGTCG CTCTGTTGCC GGTGCCAAGT
CCGGGTGCTG AACGGTCGTC GGGCATGGGT GACTTCAACT GGGCGATCTT TTCCAGCACC
AAGCATCCGG CGGAAGCCTT CAAGGCGCTG GAGTTCTTTG CCTCGCAGGA CAAGGACATG
TTCAAGAATT TCGGACAGCT ACCGGCCCGG TCCGATATCG CCATTCCGCC ATCGGGTTCG
CCCCTGAAGG ATGCGGCGCT GCAAGTTTTC CTCGAGCAAA TGAAATATGC CAAGCCGCGC
GGGCCGCATC CGGCATGGCC AAAAATATCC AAGGCGATCC AGGATGCCAT CCAGGCGGCC
CTGACTGGCC AGATGACGCC CAAGGATGCG CTGGACCAGG CGCAAAAGAA GATCAAAGCC
GCCCTGGGTT GA
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| Protein sequence | MIAVLALATA CPLASTARAD DVTLNLWSLD KDIQPAPNLV KQFNALNNGI KIEYRLLQFD
DVVTEAMRAY STGQAPDIIA VDNPEHALFA SRGAFLDLTD MIAKSDVIKP ANYFPGPLAS
VTWKDRYFGV PKATNTIALY YNRDMFKAKG LDPLKPPQTW DELLAAARKL NDPAKNVYGL
AFSAKASEEG TFQFLPWAQM GGGGYDHINA PGAVKALETW KTIMTEKLAS PDTLTRGQWD
STGTFNSGNA AMAISGPWEL DRMLKEAKFD WGVALLPVPS PGAERSSGMG DFNWAIFSST
KHPAEAFKAL EFFASQDKDM FKNFGQLPAR SDIAIPPSGS PLKDAALQVF LEQMKYAKPR
GPHPAWPKIS KAIQDAIQAA LTGQMTPKDA LDQAQKKIKA ALG
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