Gene Smed_4916 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4916 
Symbol 
ID5319128 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp1426382 
End bp1427614 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content59% 
IMG OID640776700 
Productextracellular solute-binding protein 
Protein accessionYP_001313632 
Protein GI150377036 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.06645 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.512511 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTATCC GAAAATATGC AATGCTGGGC GCATTCGCGC TCGCCAGCGT TTCCTTGTCA 
ACCTTTGGCG CAAGCGCCGA GGACGTAACG ATCAGAGTCT GGTCGCTTGA TCGAGACATT
CAGCCGGCAC CGAACTTGAT AAAGGATTTC AACGAGCTGA ACTCCGGTAT TAAAGTCGAG
TATCGGCAGA TCCAGTTCGA TGACGTGGTC AGCGAAGCCA TGCGGGCTTA TTCGACCGGA
CAAGCGCCGG ACATCATCGC CGTCGACAAT CCCGAACACG CGCTCTTTGC GTCTCGCGGC
GCGTTTCTCG ATCTGAGCGA CATGATCGCG AAGTCCTCCG TCGTAAAGCC GGAGAACTAT
TTCAAGGGGC CGCTCGCCTC CGTGACCTGG GACGGGAAAT ATTACGGTAT CCCCAAGGCG
ACCAACACGA TCGCCCTTTA TTACAACAAG GACATGTTCA AGGCGAAAGG TCTGGACCCG
AACAAGCCTC CGCAAACCTG GGACGAACTG GTCGAGGCGG CACGCAAGCT GAGCGACCCC
GCTCAGAACG TCTACGGCAT CACCTTTTCG GCAAAGGCCA ACGAGGAGGG GACATTCCAG
TTTCTGCCCT GGGCGCAGAT GGCCGGGGGT GGTTACGACA ACATCAATTC CGAAGGCGCG
GTCAAGGCGC TCGACGTCTG GAAGACGATC ATCGACGAGA AGCTTGCCTC GCCGGACACG
CTGACACGCA GCCAATGGGA CGCCACCGGT ACCTTCAATT CCGGCAACGC GGCCATGGCG
ATTTCCGGCC CCTGGGAACT CGACCGCATG CTCGAGGAAG CGAAGTTCGA TTGGGGCGTC
GCGCTGATGC CCGTGCCGCA GGCCGGCGCT GAACGCTCTT CGGCCATGGG CGATTTCAAT
TGGGCGATCT TTGCGAACAC CGAGCATCCG GAAGAGGCCT TCAAGGTCCT CGAATATTTC
GTTTCCCAGG ACGACCGGAT GTTCAAGGAC TTCGGACAAC TGCCGCCTCG TTCGGACATC
GCCATTCCGG CGACGGGCGA GCCGAAAAAG GACGCGGCTC TCCAGGTCTT CGTGGAGCAG
CTGAAATATG CCAAGCCGCG TGGCCCCCAT CCCGCATGGC CCAAGATCTC CAAGGCGATC
CAGGACGCCA TCCAGGCGGC GCTTACCGGG CAGATGAGCT CGAAGGAAGC GCTCGACCAG
GCGGCGGAGA AGATCAAGGC GGTTCTTGGC TGA
 
Protein sequence
MGIRKYAMLG AFALASVSLS TFGASAEDVT IRVWSLDRDI QPAPNLIKDF NELNSGIKVE 
YRQIQFDDVV SEAMRAYSTG QAPDIIAVDN PEHALFASRG AFLDLSDMIA KSSVVKPENY
FKGPLASVTW DGKYYGIPKA TNTIALYYNK DMFKAKGLDP NKPPQTWDEL VEAARKLSDP
AQNVYGITFS AKANEEGTFQ FLPWAQMAGG GYDNINSEGA VKALDVWKTI IDEKLASPDT
LTRSQWDATG TFNSGNAAMA ISGPWELDRM LEEAKFDWGV ALMPVPQAGA ERSSAMGDFN
WAIFANTEHP EEAFKVLEYF VSQDDRMFKD FGQLPPRSDI AIPATGEPKK DAALQVFVEQ
LKYAKPRGPH PAWPKISKAI QDAIQAALTG QMSSKEALDQ AAEKIKAVLG