More than 300 homologs were found in PanDaTox collection
for query gene Amir_0446 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_0446  extracellular solute-binding protein family 1  100 
 
 
424 aa  838    Actinosynnema mirum DSM 43827  Bacteria  normal  0.900099  n/a   
 
 
-
 
NC_013595  Sros_7725  ABC-type sugar transport system periplasmic component-like protein  53.69 
 
 
420 aa  436  1e-121  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3337  extracellular solute-binding protein family 1  32.04 
 
 
427 aa  173  5e-42  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.806542  normal 
 
 
-
 
NC_014165  Tbis_1105  extracellular solute-binding protein family 1  30.62 
 
 
443 aa  154  2.9999999999999998e-36  Thermobispora bispora DSM 43833  Bacteria  normal  0.698754  normal  0.0706181 
 
 
-
 
NC_013093  Amir_0403  extracellular solute-binding protein family 1  30.77 
 
 
426 aa  140  3.9999999999999997e-32  Actinosynnema mirum DSM 43827  Bacteria  normal  0.512139  n/a   
 
 
-
 
NC_008578  Acel_0552  extracellular solute-binding protein  28 
 
 
445 aa  137  5e-31  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.764632 
 
 
-
 
NC_014210  Ndas_0659  extracellular solute-binding protein family 1  29.05 
 
 
425 aa  136  6.0000000000000005e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.579585  normal  0.728331 
 
 
-
 
NC_013595  Sros_9091  ABC-type sugar transport system periplasmic component-like protein  29.22 
 
 
422 aa  135  9e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.306335  normal 
 
 
-
 
NC_013172  Bfae_25450  ABC-type sugar transport system, periplasmic component  28.53 
 
 
430 aa  135  9.999999999999999e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0772443  n/a   
 
 
-
 
NC_013174  Jden_0234  extracellular solute-binding protein family 1  28.19 
 
 
412 aa  135  1.9999999999999998e-30  Jonesia denitrificans DSM 20603  Bacteria  normal  0.497123  normal 
 
 
-
 
NC_013235  Namu_0514  extracellular solute-binding protein family 1  31.67 
 
 
426 aa  124  3e-27  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3146  extracellular solute-binding protein  26.6 
 
 
424 aa  119  9.999999999999999e-26  Arthrobacter sp. FB24  Bacteria  normal  0.0629231  n/a   
 
 
-
 
NC_013172  Bfae_05710  ABC-type sugar transport system, periplasmic component  29.04 
 
 
425 aa  117  3.9999999999999997e-25  Brachybacterium faecium DSM 4810  Bacteria  normal  0.13799  n/a   
 
 
-
 
NC_009664  Krad_3730  extracellular solute-binding protein family 1  26.21 
 
 
435 aa  113  7.000000000000001e-24  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.163607  normal  0.040318 
 
 
-
 
NC_009664  Krad_0385  extracellular solute-binding protein family 1  30.18 
 
 
410 aa  112  9e-24  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0390662 
 
 
-
 
NC_013530  Xcel_1045  extracellular solute-binding protein family 1  25.78 
 
 
488 aa  111  3e-23  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0733801  n/a   
 
 
-
 
NC_013595  Sros_2194  ABC-type sugar transport system periplasmic component-like protein  27.25 
 
 
443 aa  111  3e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7201  extracellular solute-binding protein family 1  26.11 
 
 
447 aa  101  2e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3465  extracellular solute-binding protein  30.93 
 
 
411 aa  102  2e-20  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012854  Rleg_6528  extracellular solute-binding protein family 1  27.94 
 
 
415 aa  99.4  1e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0147922 
 
 
-
 
NC_010717  PXO_00880  ABC transporter sugar binding protein  26.17 
 
 
440 aa  96.7  7e-19  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.106592  n/a   
 
 
-
 
NC_012669  Bcav_3572  extracellular solute-binding protein family 1  26.11 
 
 
427 aa  95.9  1e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.405751  normal 
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  26.49 
 
 
424 aa  93.2  8e-18  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_013131  Caci_6904  extracellular solute-binding protein family 1  26.01 
 
 
404 aa  92.4  1e-17  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.000382644  hitchhiker  0.00751503 
 
 
-
 
NC_009636  Smed_2146  extracellular solute-binding protein  26.39 
 
 
414 aa  91.7  2e-17  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_19770  extracellular solute-binding protein family 1  23.56 
 
 
423 aa  91.3  3e-17  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7721  extracellular solute-binding protein family 1  25.38 
 
 
462 aa  88.6  2e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1886  extracellular solute-binding protein family 1  24.94 
 
 
435 aa  87  6e-16  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.23125 
 
 
-
 
NC_007952  Bxe_B0420  ABC sugar transporter, periplasmic ligand binding protein  25.93 
 
 
410 aa  86.7  7e-16  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4158  extracellular solute-binding protein  29.2 
 
 
446 aa  85.9  0.000000000000001  Burkholderia ambifaria AMMD  Bacteria  normal  0.214678  normal  0.791693 
 
 
-
 
NC_009620  Smed_3812  extracellular solute-binding protein  29.01 
 
 
423 aa  86.3  0.000000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.353807  normal 
 
 
-
 
NC_009664  Krad_2582  extracellular solute-binding protein family 1  28.33 
 
 
416 aa  85.1  0.000000000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4289  extracellular solute-binding protein  24.11 
 
 
466 aa  84.3  0.000000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0954  extracellular solute-binding protein  23.16 
 
 
399 aa  84  0.000000000000005  Petrotoga mobilis SJ95  Bacteria  normal  0.0450213  n/a   
 
 
-
 
NC_008243  Meso_4520  extracellular solute-binding protein  26.13 
 
 
415 aa  83.6  0.000000000000006  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0698  extracellular solute-binding protein family 1  24.33 
 
 
428 aa  83.6  0.000000000000006  Dickeya dadantii Ech703  Bacteria  normal  0.0317884  n/a   
 
 
-
 
NC_004311  BRA0748  sugar ABC transporter, periplasmic sugar-binding protein, putative  24.65 
 
 
411 aa  83.6  0.000000000000007  Brucella suis 1330  Bacteria  normal  0.537127  n/a   
 
 
-
 
NC_009504  BOV_A0698  putative sugar ABC transporter, periplasmic sugar-binding protein  24.85 
 
 
366 aa  83.6  0.000000000000007  Brucella ovis ATCC 25840  Bacteria  normal  0.436581  n/a   
 
 
-
 
NC_009620  Smed_4159  extracellular solute-binding protein  25.82 
 
 
421 aa  83.2  0.000000000000008  Sinorhizobium medicae WSM419  Bacteria  normal  0.119299  normal  0.873951 
 
 
-
 
NC_013947  Snas_5891  extracellular solute-binding protein family 1  27.1 
 
 
402 aa  83.2  0.000000000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.403986 
 
 
-
 
NC_010552  BamMC406_4682  extracellular solute-binding protein  29.23 
 
 
412 aa  83.2  0.000000000000009  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0252692  normal 
 
 
-
 
NC_010513  Xfasm12_1607  ABC transporter sugar-binding protein  25.42 
 
 
430 aa  82.4  0.00000000000001  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_1550  extracellular solute-binding protein  24.8 
 
 
430 aa  82.4  0.00000000000001  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B0939  ABC sugar transporter, periplasmic ligand binding protein  28.42 
 
 
496 aa  82  0.00000000000002  Burkholderia sp. 383  Bacteria  normal  normal  0.328419 
 
 
-
 
NC_010623  Bphy_4057  extracellular solute-binding protein  26.06 
 
 
410 aa  82.4  0.00000000000002  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3592  extracellular solute-binding protein  28.94 
 
 
439 aa  82  0.00000000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0854  extracellular solute-binding protein family 1  27.62 
 
 
398 aa  82  0.00000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.124504  n/a   
 
 
-
 
NC_008543  Bcen2424_4775  extracellular solute-binding protein  28.94 
 
 
439 aa  82  0.00000000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.872591 
 
 
-
 
NC_010515  Bcenmc03_5508  extracellular solute-binding protein  28.94 
 
 
412 aa  81.6  0.00000000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_0968  extracellular solute-binding protein  27.35 
 
 
411 aa  82  0.00000000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.155665  n/a   
 
 
-
 
NC_009668  Oant_3895  extracellular solute-binding protein  25 
 
 
411 aa  81.6  0.00000000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_7208  extracellular solute-binding protein family 1  25.22 
 
 
410 aa  82  0.00000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_1015  extracellular solute-binding protein family 1  28.23 
 
 
418 aa  81.3  0.00000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  0.706197  normal  0.535113 
 
 
-
 
NC_010159  YpAngola_A4016  carbohydrate ABC transporter periplasmic-binding protein  23.23 
 
 
437 aa  80.9  0.00000000000004  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_3709  extracellular solute-binding protein  23.23 
 
 
437 aa  80.9  0.00000000000004  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3683  extracellular solute-binding protein  28.63 
 
 
432 aa  80.9  0.00000000000004  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3575  carbohydrate ABC transporter periplasmic-binding protein  23.23 
 
 
437 aa  80.9  0.00000000000004  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3883  maltose/maltodextrin ABC transporter periplasmic maltose/maltodextrin-binding protein  27.35 
 
 
411 aa  80.1  0.00000000000007  Yersinia pestis Angola  Bacteria  normal  normal  0.265603 
 
 
-
 
NC_009972  Haur_0298  extracellular solute-binding protein  23.79 
 
 
486 aa  79.7  0.00000000000009  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B1120  putative maltosaccharide ABC transporter, maltosaccharide-binding protein  23.29 
 
 
419 aa  79  0.0000000000001  Bacillus cereus G9842  Bacteria  hitchhiker  0.0000383609  normal 
 
 
-
 
NC_013411  GYMC61_1511  extracellular solute-binding protein family 1  22.33 
 
 
424 aa  79  0.0000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012850  Rleg_3910  extracellular solute-binding protein family 1  24.33 
 
 
412 aa  79  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.198843 
 
 
-
 
NC_009708  YpsIP31758_0914  maltose/maltodextrin ABC transporter, periplasmic maltose/maltodextrin-binding protein  27.35 
 
 
411 aa  79.7  0.0000000000001  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.459005  n/a   
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  22.86 
 
 
414 aa  79  0.0000000000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1522  extracellular solute-binding protein family 1  28.21 
 
 
421 aa  79  0.0000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.569671  normal 
 
 
-
 
NC_011071  Smal_2683  extracellular solute-binding protein family 1  22.62 
 
 
446 aa  78.6  0.0000000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.50155  normal 
 
 
-
 
NC_014151  Cfla_0501  extracellular solute-binding protein family 1  26.83 
 
 
433 aa  78.6  0.0000000000002  Cellulomonas flavigena DSM 20109  Bacteria  decreased coverage  0.0000488029  hitchhiker  0.0000184856 
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  27.39 
 
 
415 aa  77.8  0.0000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0930087 
 
 
-
 
NC_013946  Mrub_2459  extracellular solute-binding protein family 1  27.68 
 
 
419 aa  77.8  0.0000000000004  Meiothermus ruber DSM 1279  Bacteria  normal  0.846254  normal  0.585846 
 
 
-
 
NC_013131  Caci_2170  extracellular solute-binding protein family 1  22.89 
 
 
428 aa  77.4  0.0000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_0753  extracellular solute-binding protein  23.67 
 
 
429 aa  77.4  0.0000000000005  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00037903  n/a   
 
 
-
 
NC_013159  Svir_11620  ABC-type sugar transport system, periplasmic component  23.66 
 
 
426 aa  77  0.0000000000005  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014211  Ndas_4930  extracellular solute-binding protein family 1  29.08 
 
 
419 aa  76.6  0.0000000000007  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.265943  normal 
 
 
-
 
NC_008048  Sala_1023  extracellular solute-binding protein  26.5 
 
 
422 aa  76.6  0.0000000000009  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.705733  normal 
 
 
-
 
NC_013947  Snas_0758  extracellular solute-binding protein family 1  23.63 
 
 
443 aa  76.3  0.0000000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2031  extracellular solute-binding protein family 1  25.56 
 
 
442 aa  76.3  0.0000000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.298737 
 
 
-
 
NC_013093  Amir_2832  extracellular solute-binding protein family 1  29.67 
 
 
417 aa  76.3  0.000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.617934  n/a   
 
 
-
 
NC_012880  Dd703_3168  extracellular solute-binding protein family 1  26.51 
 
 
419 aa  76.3  0.000000000001  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2703  extracellular solute-binding protein family 1  23.23 
 
 
450 aa  75.9  0.000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000000263225  n/a   
 
 
-
 
NC_013131  Caci_7516  extracellular solute-binding protein family 1  26.96 
 
 
452 aa  75.9  0.000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4988  extracellular solute-binding protein  24.88 
 
 
414 aa  75.5  0.000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.601947  normal 
 
 
-
 
NC_008541  Arth_0482  extracellular solute-binding protein  23.68 
 
 
443 aa  75.1  0.000000000002  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00268905  n/a   
 
 
-
 
NC_009338  Mflv_3775  extracellular solute-binding protein  24.91 
 
 
441 aa  75.1  0.000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.577316  normal  0.394592 
 
 
-
 
NC_012912  Dd1591_3240  extracellular solute-binding protein family 1  25.65 
 
 
431 aa  74.7  0.000000000003  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4688  extracellular solute-binding protein family 1  27.18 
 
 
418 aa  74.7  0.000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.733472 
 
 
-
 
NC_008726  Mvan_2624  extracellular solute-binding protein  25.42 
 
 
444 aa  74.7  0.000000000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_1552  extracellular solute-binding protein  24.16 
 
 
391 aa  74.7  0.000000000003  Thermotoga petrophila RKU-1  Bacteria  decreased coverage  0.000000398035  n/a   
 
 
-
 
NC_002977  MCA1941  sugar ABC transporter, sugar-binding protein, putative  24.32 
 
 
434 aa  73.9  0.000000000004  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3674  ABC sugar transporter, periplasmic binding protein  26.89 
 
 
404 aa  74.3  0.000000000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2680  extracellular solute-binding protein family 1  25.82 
 
 
458 aa  74.3  0.000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4442  extracellular solute-binding protein  30.68 
 
 
425 aa  74.3  0.000000000004  Paracoccus denitrificans PD1222  Bacteria  decreased coverage  0.00539632  normal 
 
 
-
 
NC_013131  Caci_2611  extracellular solute-binding protein family 1  27.52 
 
 
453 aa  74.3  0.000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.058641  normal 
 
 
-
 
NC_007413  Ava_3685  extracellular solute-binding protein  23.41 
 
 
432 aa  73.9  0.000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1680  extracellular solute-binding protein family 1  24.86 
 
 
430 aa  73.9  0.000000000005  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.173253  normal 
 
 
-
 
NC_011884  Cyan7425_3276  extracellular solute-binding protein family 1  23.26 
 
 
420 aa  73.9  0.000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  0.147153  normal  0.336546 
 
 
-
 
NC_010159  YpAngola_A2082  carbohydrate ABC transporter periplasmic-binding protein  27 
 
 
422 aa  73.9  0.000000000005  Yersinia pestis Angola  Bacteria  normal  0.890991  normal  0.0137332 
 
 
-
 
NC_009050  Rsph17029_3409  extracellular solute-binding protein  26.89 
 
 
404 aa  73.6  0.000000000006  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.280364  normal  0.614723 
 
 
-
 
NC_009485  BBta_0915  putative ABC transporter, periplasmic binding protein  24.92 
 
 
443 aa  73.6  0.000000000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.779259 
 
 
-
 
NC_009616  Tmel_0690  extracellular solute-binding protein  24.85 
 
 
402 aa  73.6  0.000000000007  Thermosipho melanesiensis BI429  Bacteria  normal  0.678935  n/a   
 
 
-
 
NC_009674  Bcer98_2714  extracellular solute-binding protein  23.72 
 
 
419 aa  73.2  0.000000000008  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.182746  n/a   
 
 
-
 
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