| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3246 |
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| Symbol | |
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| ID | 6283110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 3655894 |
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| End bp | 3657216 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642622819 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_001896861 |
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| Protein GI | 187925219 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00178427 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.716937 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCCAG CCCTCAAATC CACGCTAAAA GCGGTCAGTG CCGGCGCTGT CGCATGCTTT
GCATTGAGCG CGTCGGCGGC GACGGTGACG ATCGCCACGC TGAACAATCC GGACATGATC
GAGTTGAAGA AACTCTCGCC CGAATTCGAA AAGGCGAATC CGGACATCAA GCTGAACTGG
GTGATTCTCG AAGAAAACGT GCTGCGTCAA CGCGCCACGA CCGACATCAC GACCGGCAGC
GGCCAGTTCG ACGTGATGAC GATCGGCGCG TACGAAACGC CGCAATGGGG CAAGCGCGGC
TGGCTCACGC CGCTCACGAA CCTGCCCGCT GATTACGATC TGAACGACGT CGTGAAGACG
GCCCGCGACG GCCTCTCGAG CGGCGGCCAG TTGTATGCGC TGCCGTTCTA CGTCGAAAGC
TCGATGACGT ATTACCGCAA GGATCTGTTC GAGAAGGCCG GCCTGAAGAT GCCCGACCAG
CCCACTTACG ACCAGATCAA GCAGTTCGCC GACAAGCTCA CCGACAAAGC CAATGGCATT
TACGGCATCT GTCTGCGTGG CAAGGCGGGC TGGGGCGAAA ACATGGCTTA CGGCACGACG
GTGGTGAACA CCTTCGGCGG CCGCTGGTTC GACGAGAAGT GGAACGCGCA GCTCACTTCG
CCGGAATGGA AAAAGGCGAT GACCTTCTAT GTCGACCTGC TAAAGAAGGA CGGCCCTCCG
GGAGCGAGCT CGAATGGCTT CAACGAGAAC CTGACGCTGA TGTCCTCCGG CAAGTGCGCG
ATGTGGATCG ACGCCACGGT GGCAGCCGGC ATGCTCTACA ACAAGCAGCA ATCGCAGATC
GCCGACAAGG TCGGTTTTGC GGCGGCGCCG GTCGCGGTCA CGCCGAAGGG TTCGCATTGG
CTGTGGGCCT GGGCGCTGGC GATTCCGAAG TCGTCGAAGC AGGCTGACGC GGCCAAGAAG
TTCATCACGT GGGCCACGTC GAAGCAGTAC ATCGAACTGG TCGCGAAGGA CGAAGGCTGG
GCCTCGGTGC CGCCGGGAAC GCGTAAATCC ACCTACGCGC GCGCCGAGTA CAAGCAGGCA
GCACCGTTCG GCGACTTCGT GCTGAAGGCG ATCGAAACGG CGGATCCGGA GCATCCGACG
CTCAAGCCGG TGCCGTACAC CGGTGTGCAG TTCGTCGGGA TTCCTGAGTT CCAGTCGTTC
GGCACCGTGG TGGGTCAGAG CATCTCCGGC GCGATTGCCG GTCAGATGAC GATCGATCAG
GCGCTGGCAG CTGGCAACGC CACTGCGGAT CGCGCGGTGA AACAGGCCGG CTATCAGAAG
TAA
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| Protein sequence | MKPALKSTLK AVSAGAVACF ALSASAATVT IATLNNPDMI ELKKLSPEFE KANPDIKLNW
VILEENVLRQ RATTDITTGS GQFDVMTIGA YETPQWGKRG WLTPLTNLPA DYDLNDVVKT
ARDGLSSGGQ LYALPFYVES SMTYYRKDLF EKAGLKMPDQ PTYDQIKQFA DKLTDKANGI
YGICLRGKAG WGENMAYGTT VVNTFGGRWF DEKWNAQLTS PEWKKAMTFY VDLLKKDGPP
GASSNGFNEN LTLMSSGKCA MWIDATVAAG MLYNKQQSQI ADKVGFAAAP VAVTPKGSHW
LWAWALAIPK SSKQADAAKK FITWATSKQY IELVAKDEGW ASVPPGTRKS TYARAEYKQA
APFGDFVLKA IETADPEHPT LKPVPYTGVQ FVGIPEFQSF GTVVGQSISG AIAGQMTIDQ
ALAAGNATAD RAVKQAGYQK
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