More than 300 homologs were found in PanDaTox collection
for query gene Franean1_3944 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_3944  extracellular solute-binding protein  100 
 
 
464 aa  942    Frankia sp. EAN1pec  Bacteria  normal  0.920276  normal  0.0416082 
 
 
-
 
NC_007777  Francci3_2834  extracellular solute-binding protein  61.97 
 
 
459 aa  536  1e-151  Frankia sp. CcI3  Bacteria  normal  0.873121  normal 
 
 
-
 
NC_009921  Franean1_1895  extracellular solute-binding protein  38.86 
 
 
445 aa  250  5e-65  Frankia sp. EAN1pec  Bacteria  normal  0.854658  normal 
 
 
-
 
NC_007777  Francci3_2252  extracellular solute-binding protein  39.5 
 
 
469 aa  249  6e-65  Frankia sp. CcI3  Bacteria  hitchhiker  0.00844632  hitchhiker  0.0063434 
 
 
-
 
NC_007644  Moth_1484  extracellular solute-binding protein  33.98 
 
 
444 aa  233  7.000000000000001e-60  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.00000000000980441  normal 
 
 
-
 
NC_007778  RPB_0174  extracellular solute-binding protein  29.51 
 
 
426 aa  161  2e-38  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.396862  normal 
 
 
-
 
NC_011369  Rleg2_1773  extracellular solute-binding protein family 1  30.45 
 
 
421 aa  161  3e-38  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0165592 
 
 
-
 
NC_007958  RPD_3151  extracellular solute-binding protein  31.28 
 
 
426 aa  155  2e-36  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.345086 
 
 
-
 
NC_004311  BRA1180  sugar ABC transporter, periplasmic sugar-binding protein, putative  28.22 
 
 
421 aa  154  2.9999999999999998e-36  Brucella suis 1330  Bacteria  normal  0.409061  n/a   
 
 
-
 
NC_009667  Oant_1666  extracellular solute-binding protein  27.68 
 
 
421 aa  150  4e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0129  extracellular solute-binding protein family 1  28.24 
 
 
426 aa  145  1e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.57996  n/a   
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  27.55 
 
 
407 aa  141  1.9999999999999998e-32  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_011981  Avi_7590  ABC transporter substrate binding protein (sugar)  26.98 
 
 
447 aa  142  1.9999999999999998e-32  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  29.68 
 
 
441 aa  137  3.0000000000000003e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  26.36 
 
 
445 aa  136  8e-31  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6664  extracellular solute-binding protein  29 
 
 
452 aa  135  1.9999999999999998e-30  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0689323 
 
 
-
 
NC_009429  Rsph17025_3553  hypothetical protein  28.66 
 
 
427 aa  135  1.9999999999999998e-30  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_1316  extracellular solute-binding protein  25.72 
 
 
423 aa  134  3e-30  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_011988  Avi_5331  ABC transporter substrate binding protein (sugar)  28.78 
 
 
431 aa  130  4.0000000000000003e-29  Agrobacterium vitis S4  Bacteria  normal  0.998389  n/a   
 
 
-
 
NC_013411  GYMC61_2845  extracellular solute-binding protein family 1  27.97 
 
 
439 aa  122  9.999999999999999e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009667  Oant_0637  extracellular solute-binding protein  25.72 
 
 
425 aa  119  9e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0656  extracellular solute-binding protein family 1  27.08 
 
 
431 aa  115  2.0000000000000002e-24  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.31335 
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  26.12 
 
 
441 aa  115  2.0000000000000002e-24  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.07 
 
 
458 aa  114  3e-24  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  25.85 
 
 
458 aa  113  8.000000000000001e-24  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3226  Transcriptional regulator  26.82 
 
 
410 aa  113  8.000000000000001e-24  Meiothermus silvanus DSM 9946  Bacteria  normal  0.101031  normal 
 
 
-
 
NC_014213  Mesil_3422  ABC-type sugar transport systems permease component  26.82 
 
 
410 aa  113  8.000000000000001e-24  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  25.75 
 
 
458 aa  113  9e-24  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  25.85 
 
 
458 aa  112  1.0000000000000001e-23  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  25.85 
 
 
458 aa  112  1.0000000000000001e-23  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  25.85 
 
 
458 aa  112  1.0000000000000001e-23  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  25.85 
 
 
458 aa  112  1.0000000000000001e-23  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  25.85 
 
 
458 aa  112  1.0000000000000001e-23  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  25.64 
 
 
458 aa  112  2.0000000000000002e-23  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0955  extracellular solute-binding protein family 1  28.95 
 
 
437 aa  108  3e-22  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.152307 
 
 
-
 
NC_013525  Tter_0829  extracellular solute-binding protein family 1  28.82 
 
 
504 aa  107  4e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_0910  extracellular solute-binding protein family 1  28.48 
 
 
466 aa  106  1e-21  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.764586  normal 
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  27.44 
 
 
415 aa  105  2e-21  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0930087 
 
 
-
 
NC_008751  Dvul_0224  extracellular solute-binding protein  27.56 
 
 
431 aa  105  2e-21  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  25.61 
 
 
458 aa  105  2e-21  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0289  extracellular solute-binding protein  24.38 
 
 
437 aa  103  6e-21  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000019091  n/a   
 
 
-
 
NC_011992  Dtpsy_2659  extracellular solute-binding protein family 1  26.28 
 
 
431 aa  100  5e-20  Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00136924  n/a   
 
 
-
 
NC_009953  Sare_0747  extracellular solute-binding protein  26.47 
 
 
433 aa  100  6e-20  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00190936 
 
 
-
 
NC_009620  Smed_4159  extracellular solute-binding protein  26.04 
 
 
421 aa  100  6e-20  Sinorhizobium medicae WSM419  Bacteria  normal  0.119299  normal  0.873951 
 
 
-
 
NC_013946  Mrub_0045  extracellular solute-binding protein family 1  28.1 
 
 
414 aa  100  7e-20  Meiothermus ruber DSM 1279  Bacteria  normal  0.713374  normal 
 
 
-
 
NC_010002  Daci_5306  extracellular solute-binding protein  26.7 
 
 
431 aa  99.8  9e-20  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.457023 
 
 
-
 
NC_013526  Tter_2294  extracellular solute-binding protein family 1  26.13 
 
 
448 aa  99  2e-19  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3306  extracellular solute-binding protein  26.38 
 
 
431 aa  99  2e-19  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2108  extracellular solute-binding protein family 1  29.85 
 
 
430 aa  97.8  4e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.553068 
 
 
-
 
NC_013947  Snas_0203  extracellular solute-binding protein family 1  31.42 
 
 
441 aa  96.7  7e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.346278  normal  0.123927 
 
 
-
 
NC_009074  BURPS668_3697  glycerol-3-phosphate transporter periplasmic binding protein  29.2 
 
 
441 aa  96.7  9e-19  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2744  glycerol-3-phosphate transporter periplasmic binding protein  29.2 
 
 
441 aa  96.3  1e-18  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3726  glycerol-3-phosphate transporter periplasmic binding protein  29.2 
 
 
441 aa  96.3  1e-18  Burkholderia pseudomallei 1710b  Bacteria  normal  0.268589  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3209  glycerol-3-phosphate transporter periplasmic binding protein  29.2 
 
 
441 aa  96.3  1e-18  Burkholderia mallei SAVP1  Bacteria  normal  0.0248662  n/a   
 
 
-
 
NC_008836  BMA10229_A1760  glycerol-3-phosphate transporter periplasmic binding protein  29.2 
 
 
441 aa  96.3  1e-18  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2794  glycerol-3-phosphate transporter periplasmic binding protein  29.2 
 
 
441 aa  96.3  1e-18  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_27350  ABC-type sugar transport system, periplasmic component  31.82 
 
 
444 aa  96.3  1e-18  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.404715  normal  0.481515 
 
 
-
 
NC_014165  Tbis_1886  extracellular solute-binding protein family 1  28.22 
 
 
435 aa  95.5  2e-18  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.23125 
 
 
-
 
NC_010003  Pmob_0721  extracellular solute-binding protein  23.65 
 
 
437 aa  95.5  2e-18  Petrotoga mobilis SJ95  Bacteria  normal  0.540981  n/a   
 
 
-
 
NC_012912  Dd1591_3386  extracellular solute-binding protein family 1  27.56 
 
 
440 aa  95.5  2e-18  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3509  glycerol-3-phosphate transporter periplasmic binding protein  28.65 
 
 
441 aa  95.1  2e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  0.839022  normal  0.0272066 
 
 
-
 
NC_012850  Rleg_3910  extracellular solute-binding protein family 1  27.08 
 
 
412 aa  94.7  3e-18  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.198843 
 
 
-
 
NC_007651  BTH_I3021  glycerol-3-phosphate transporter periplasmic binding protein  28.5 
 
 
441 aa  94.7  3e-18  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2791  extracellular solute-binding protein family 1  28.08 
 
 
402 aa  94.7  3e-18  Meiothermus ruber DSM 1279  Bacteria  normal  0.448693  normal 
 
 
-
 
NC_009380  Strop_0803  extracellular solute-binding protein  27.02 
 
 
433 aa  95.1  3e-18  Salinispora tropica CNB-440  Bacteria  normal  0.437157  normal 
 
 
-
 
NC_007951  Bxe_A0448  glycerol-3-phosphate transporter periplasmic binding protein  28.65 
 
 
441 aa  94  5e-18  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8464  extracellular solute-binding protein family 1  32.68 
 
 
481 aa  93.2  8e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.635867  normal  0.0842744 
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  29.63 
 
 
422 aa  92.8  1e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013521  Sked_06560  ABC-type sugar transport system, periplasmic component  28.57 
 
 
453 aa  92.8  1e-17  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_3755  glycerol-3-phosphate transporter periplasmic binding protein  28.94 
 
 
441 aa  92.4  1e-17  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_3703  extracellular solute-binding protein family 1  31.9 
 
 
466 aa  92.4  1e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0104923  normal 
 
 
-
 
NC_013131  Caci_2418  extracellular solute-binding protein family 1  26.88 
 
 
447 aa  92.4  2e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0125  glycerol-3-phosphate transporter periplasmic binding protein  27.63 
 
 
444 aa  92  2e-17  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_00790  ABC-type sugar transport system, periplasmic component  25.32 
 
 
437 aa  92  2e-17  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.312494  normal  0.191801 
 
 
-
 
NC_010508  Bcenmc03_0374  glycerol-3-phosphate transporter periplasmic binding protein  27.6 
 
 
444 aa  90.9  4e-17  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2712  glycerol-3-phosphate transporter periplasmic binding protein  27.6 
 
 
443 aa  90.9  4e-17  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290307  n/a   
 
 
-
 
NC_008542  Bcen2424_0395  glycerol-3-phosphate transporter periplasmic binding protein  27.6 
 
 
443 aa  90.9  4e-17  Burkholderia cenocepacia HI2424  Bacteria  normal  0.954301  n/a   
 
 
-
 
NC_013595  Sros_3339  Maltose-binding periplasmic protein/domains- like protein  26.28 
 
 
431 aa  89.7  1e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.202326 
 
 
-
 
NC_013205  Aaci_2049  extracellular solute-binding protein family 1  26.96 
 
 
438 aa  89.4  1e-16  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.266449  n/a   
 
 
-
 
NC_010483  TRQ2_1696  extracellular solute-binding protein  22.82 
 
 
436 aa  89.4  1e-16  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00506774  n/a   
 
 
-
 
NC_013131  Caci_4697  extracellular solute-binding protein family 1  28.19 
 
 
442 aa  89.4  1e-16  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00367387  normal 
 
 
-
 
NC_011366  Rleg2_5687  extracellular solute-binding protein family 1  28.67 
 
 
401 aa  89.4  1e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.627079  normal 
 
 
-
 
NC_007510  Bcep18194_A3492  glycerol-3-phosphate transporter periplasmic binding protein  27.46 
 
 
444 aa  89  2e-16  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008528  OEOE_1459  ABC-type sugar transport system, periplasmic component  24.07 
 
 
457 aa  88.6  2e-16  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0297  extracellular solute-binding protein family 1  26.37 
 
 
453 aa  88.6  2e-16  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0248346 
 
 
-
 
NC_013421  Pecwa_0117  glycerol-3-phosphate transporter periplasmic binding protein  27.38 
 
 
444 aa  89  2e-16  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3622  extracellular solute-binding protein family 1  23.9 
 
 
412 aa  89  2e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  23.72 
 
 
414 aa  87.8  3e-16  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4045  glycerol-3-phosphate transporter periplasmic binding protein  26.63 
 
 
439 aa  87.4  4e-16  Dickeya zeae Ech1591  Bacteria  normal  0.661181  n/a   
 
 
-
 
NC_008390  Bamb_0314  glycerol-3-phosphate transporter periplasmic binding protein  27.2 
 
 
444 aa  87.4  4e-16  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3572  extracellular solute-binding protein family 1  25.34 
 
 
427 aa  87.4  5e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.405751  normal 
 
 
-
 
NC_013946  Mrub_0791  extracellular solute-binding protein family 1  28.09 
 
 
399 aa  87  6e-16  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.418273 
 
 
-
 
NC_010622  Bphy_2709  glycerol-3-phosphate transporter periplasmic binding protein  26.15 
 
 
441 aa  87  6e-16  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0631  extracellular solute-binding protein family 1  28.92 
 
 
435 aa  87  6e-16  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3270  extracellular solute-binding protein family 1  27.08 
 
 
435 aa  87  6e-16  Dickeya dadantii Ech703  Bacteria  normal  0.543416  n/a   
 
 
-
 
NC_013421  Pecwa_0845  extracellular solute-binding protein family 1  29.96 
 
 
435 aa  87  6e-16  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2846  extracellular solute-binding protein family 1  26.38 
 
 
435 aa  86.7  8e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.687638 
 
 
-
 
CP001509  ECD_03302  glycerol-3-phosphate transporter subunit  27.75 
 
 
438 aa  85.9  0.000000000000001  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0262  extracellular solute-binding protein family 1  27.75 
 
 
438 aa  85.9  0.000000000000001  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2114  extracellular solute-binding protein family 1  28.73 
 
 
428 aa  85.9  0.000000000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
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