More than 300 homologs were found in PanDaTox collection
for query gene Francci3_2834 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_2834  extracellular solute-binding protein  100 
 
 
459 aa  931    Frankia sp. CcI3  Bacteria  normal  0.873121  normal 
 
 
-
 
NC_009921  Franean1_3944  extracellular solute-binding protein  61.83 
 
 
464 aa  536  1e-151  Frankia sp. EAN1pec  Bacteria  normal  0.920276  normal  0.0416082 
 
 
-
 
NC_007777  Francci3_2252  extracellular solute-binding protein  38.76 
 
 
469 aa  242  1e-62  Frankia sp. CcI3  Bacteria  hitchhiker  0.00844632  hitchhiker  0.0063434 
 
 
-
 
NC_009921  Franean1_1895  extracellular solute-binding protein  38.48 
 
 
445 aa  234  3e-60  Frankia sp. EAN1pec  Bacteria  normal  0.854658  normal 
 
 
-
 
NC_007644  Moth_1484  extracellular solute-binding protein  32.74 
 
 
444 aa  208  2e-52  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.00000000000980441  normal 
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  29.86 
 
 
407 aa  152  1e-35  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_011369  Rleg2_1773  extracellular solute-binding protein family 1  30.42 
 
 
421 aa  148  2.0000000000000003e-34  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0165592 
 
 
-
 
NC_011004  Rpal_0129  extracellular solute-binding protein family 1  29.29 
 
 
426 aa  142  9.999999999999999e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.57996  n/a   
 
 
-
 
NC_004311  BRA1180  sugar ABC transporter, periplasmic sugar-binding protein, putative  28.25 
 
 
421 aa  141  1.9999999999999998e-32  Brucella suis 1330  Bacteria  normal  0.409061  n/a   
 
 
-
 
NC_007778  RPB_0174  extracellular solute-binding protein  29.95 
 
 
426 aa  141  3e-32  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.396862  normal 
 
 
-
 
NC_007958  RPD_3151  extracellular solute-binding protein  30.26 
 
 
426 aa  140  6e-32  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.345086 
 
 
-
 
NC_011981  Avi_7590  ABC transporter substrate binding protein (sugar)  28.53 
 
 
447 aa  137  4e-31  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_1666  extracellular solute-binding protein  28.25 
 
 
421 aa  134  3e-30  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3226  Transcriptional regulator  30.02 
 
 
410 aa  131  3e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  0.101031  normal 
 
 
-
 
NC_014213  Mesil_3422  ABC-type sugar transport systems permease component  30.02 
 
 
410 aa  131  3e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6664  extracellular solute-binding protein  28.21 
 
 
452 aa  126  6e-28  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0689323 
 
 
-
 
NC_013721  HMPREF0424_1316  extracellular solute-binding protein  26.87 
 
 
423 aa  124  5e-27  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  26.95 
 
 
441 aa  121  1.9999999999999998e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  28.76 
 
 
441 aa  118  1.9999999999999998e-25  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3553  hypothetical protein  25.75 
 
 
427 aa  115  2.0000000000000002e-24  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_1696  extracellular solute-binding protein  26.07 
 
 
436 aa  113  9e-24  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00506774  n/a   
 
 
-
 
NC_011988  Avi_5331  ABC transporter substrate binding protein (sugar)  26.65 
 
 
431 aa  111  3e-23  Agrobacterium vitis S4  Bacteria  normal  0.998389  n/a   
 
 
-
 
NC_010003  Pmob_0289  extracellular solute-binding protein  27.98 
 
 
437 aa  110  4.0000000000000004e-23  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000019091  n/a   
 
 
-
 
NC_012912  Dd1591_3386  extracellular solute-binding protein family 1  28.25 
 
 
440 aa  107  5e-22  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  24.89 
 
 
445 aa  107  5e-22  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0637  extracellular solute-binding protein  24.72 
 
 
425 aa  104  3e-21  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0224  extracellular solute-binding protein  26.18 
 
 
431 aa  102  1e-20  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0753  extracellular solute-binding protein  25.97 
 
 
437 aa  101  3e-20  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  27.93 
 
 
415 aa  100  4e-20  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0930087 
 
 
-
 
NC_010003  Pmob_0721  extracellular solute-binding protein  26.74 
 
 
437 aa  101  4e-20  Petrotoga mobilis SJ95  Bacteria  normal  0.540981  n/a   
 
 
-
 
NC_014212  Mesil_0955  extracellular solute-binding protein family 1  27.13 
 
 
437 aa  97.4  4e-19  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.152307 
 
 
-
 
NC_011769  DvMF_0656  extracellular solute-binding protein family 1  25.64 
 
 
431 aa  97.4  4e-19  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.31335 
 
 
-
 
NC_013131  Caci_2418  extracellular solute-binding protein family 1  26.79 
 
 
447 aa  97.1  6e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3270  extracellular solute-binding protein family 1  26.84 
 
 
435 aa  96.7  8e-19  Dickeya dadantii Ech703  Bacteria  normal  0.543416  n/a   
 
 
-
 
NC_014165  Tbis_1886  extracellular solute-binding protein family 1  28.36 
 
 
435 aa  93.6  6e-18  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.23125 
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  28.61 
 
 
422 aa  93.6  7e-18  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.57 
 
 
458 aa  92  2e-17  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.62 
 
 
458 aa  91.7  3e-17  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.4 
 
 
458 aa  91.3  3e-17  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2845  extracellular solute-binding protein family 1  25.36 
 
 
439 aa  90.5  5e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.4 
 
 
458 aa  90.5  6e-17  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.4 
 
 
458 aa  90.5  6e-17  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.76 
 
 
458 aa  90.5  6e-17  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  24.76 
 
 
458 aa  90.1  7e-17  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  24.76 
 
 
458 aa  90.1  7e-17  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  24.2 
 
 
458 aa  89.7  1e-16  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3339  Maltose-binding periplasmic protein/domains- like protein  28.33 
 
 
431 aa  89.7  1e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.202326 
 
 
-
 
NC_012669  Bcav_2846  extracellular solute-binding protein family 1  29.26 
 
 
435 aa  88.6  2e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.687638 
 
 
-
 
NC_011992  Dtpsy_2659  extracellular solute-binding protein family 1  25.73 
 
 
431 aa  88.6  2e-16  Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00136924  n/a   
 
 
-
 
NC_013946  Mrub_0322  extracellular solute-binding protein family 1  24.7 
 
 
435 aa  89  2e-16  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_3527  extracellular solute-binding protein family 1  26.15 
 
 
436 aa  88.6  2e-16  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3957  extracellular solute-binding protein family 1  26.87 
 
 
432 aa  88.2  3e-16  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2108  extracellular solute-binding protein family 1  29.34 
 
 
430 aa  87.8  3e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.553068 
 
 
-
 
NC_013521  Sked_18880  carbohydrate-binding protein  26.33 
 
 
460 aa  87.8  4e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.141989  normal  0.173455 
 
 
-
 
NC_010002  Daci_5306  extracellular solute-binding protein  25.91 
 
 
431 aa  87.4  5e-16  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.457023 
 
 
-
 
NC_013131  Caci_7906  extracellular solute-binding protein family 1  29.38 
 
 
420 aa  85.9  0.000000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.819994  normal 
 
 
-
 
NC_012669  Bcav_1296  extracellular solute-binding protein family 1  27.12 
 
 
443 aa  85.5  0.000000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.190784  normal 
 
 
-
 
NC_012669  Bcav_0910  extracellular solute-binding protein family 1  25.88 
 
 
466 aa  85.1  0.000000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.764586  normal 
 
 
-
 
NC_012917  PC1_0631  extracellular solute-binding protein family 1  30.94 
 
 
435 aa  85.5  0.000000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1508  extracellular solute-binding protein family 1  27.4 
 
 
451 aa  85.1  0.000000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.55774  normal 
 
 
-
 
NC_009620  Smed_4644  extracellular solute-binding protein  26.38 
 
 
409 aa  85.5  0.000000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.0265502  normal  0.0904039 
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  26.14 
 
 
414 aa  85.1  0.000000000000003  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3306  extracellular solute-binding protein  25.49 
 
 
431 aa  84.3  0.000000000000004  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011366  Rleg2_5687  extracellular solute-binding protein family 1  30.26 
 
 
401 aa  84.3  0.000000000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.627079  normal 
 
 
-
 
NC_003909  BCE_1899  extracellular solute-binding protein, putative  24.27 
 
 
416 aa  83.6  0.000000000000007  Bacillus cereus ATCC 10987  Bacteria  normal  0.41529  n/a   
 
 
-
 
NC_006274  BCZK1634  sugar ABC transporter, sugar-binding protein  24.27 
 
 
416 aa  83.6  0.000000000000007  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4688  extracellular solute-binding protein family 1  26 
 
 
418 aa  83.2  0.000000000000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.733472 
 
 
-
 
NC_013526  Tter_2294  extracellular solute-binding protein family 1  28.92 
 
 
448 aa  83.2  0.00000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3282  extracellular solute-binding protein  25.82 
 
 
435 aa  82.8  0.00000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0747  extracellular solute-binding protein  28.66 
 
 
433 aa  82  0.00000000000002  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00190936 
 
 
-
 
NC_012858  Rleg_6631  extracellular solute-binding protein family 1  30.26 
 
 
410 aa  82  0.00000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.325237 
 
 
-
 
NC_004311  BRA0655  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  31.96 
 
 
433 aa  81.6  0.00000000000003  Brucella suis 1330  Bacteria  normal  0.454035  n/a   
 
 
-
 
NC_009667  Oant_2485  extracellular solute-binding protein  29.74 
 
 
415 aa  81.3  0.00000000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00421769  n/a   
 
 
-
 
NC_010320  Teth514_0753  extracellular solute-binding protein  26.06 
 
 
429 aa  80.9  0.00000000000004  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00037903  n/a   
 
 
-
 
NC_013947  Snas_0203  extracellular solute-binding protein family 1  28.91 
 
 
441 aa  80.9  0.00000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.346278  normal  0.123927 
 
 
-
 
NC_013946  Mrub_0045  extracellular solute-binding protein family 1  25.62 
 
 
414 aa  80.9  0.00000000000004  Meiothermus ruber DSM 1279  Bacteria  normal  0.713374  normal 
 
 
-
 
NC_011831  Cagg_2195  extracellular solute-binding protein family 1  25.96 
 
 
450 aa  80.5  0.00000000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1229  extracellular solute-binding protein  27.06 
 
 
461 aa  80.1  0.00000000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0257979  normal  0.868479 
 
 
-
 
NC_013525  Tter_0829  extracellular solute-binding protein family 1  26.94 
 
 
504 aa  80.1  0.00000000000008  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013421  Pecwa_0845  extracellular solute-binding protein family 1  29.12 
 
 
435 aa  79.7  0.0000000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0113  extracellular solute-binding protein  26.9 
 
 
455 aa  78.2  0.0000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.270734  normal 
 
 
-
 
NC_013947  Snas_4693  extracellular solute-binding protein family 1  28.19 
 
 
457 aa  77.8  0.0000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.363745 
 
 
-
 
NC_009720  Xaut_4449  extracellular solute-binding protein  25.81 
 
 
446 aa  77  0.0000000000006  Xanthobacter autotrophicus Py2  Bacteria  decreased coverage  0.00843107  normal  0.115126 
 
 
-
 
NC_013521  Sked_00790  ABC-type sugar transport system, periplasmic component  25.14 
 
 
437 aa  77  0.0000000000007  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.312494  normal  0.191801 
 
 
-
 
NC_010508  Bcenmc03_0374  glycerol-3-phosphate transporter periplasmic binding protein  27.45 
 
 
444 aa  76.6  0.0000000000008  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2712  glycerol-3-phosphate transporter periplasmic binding protein  27.45 
 
 
443 aa  76.6  0.0000000000008  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290307  n/a   
 
 
-
 
NC_008542  Bcen2424_0395  glycerol-3-phosphate transporter periplasmic binding protein  27.45 
 
 
443 aa  76.6  0.0000000000008  Burkholderia cenocepacia HI2424  Bacteria  normal  0.954301  n/a   
 
 
-
 
NC_014212  Mesil_0475  extracellular solute-binding protein family 1  27.61 
 
 
397 aa  76.6  0.0000000000008  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_27350  ABC-type sugar transport system, periplasmic component  27.71 
 
 
444 aa  76.6  0.0000000000008  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.404715  normal  0.481515 
 
 
-
 
NC_013131  Caci_3703  extracellular solute-binding protein family 1  33.33 
 
 
466 aa  76.3  0.000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0104923  normal 
 
 
-
 
NC_013526  Tter_2303  extracellular solute-binding protein family 1  28.57 
 
 
480 aa  76.3  0.000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.316955  n/a   
 
 
-
 
NC_008043  TM1040_3216  extracellular solute-binding protein  26.2 
 
 
425 aa  76.3  0.000000000001  Ruegeria sp. TM1040  Bacteria  normal  normal  0.949389 
 
 
-
 
NC_013595  Sros_3538  Maltose-binding periplasmic protein/domains- like protein  25.11 
 
 
406 aa  75.9  0.000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.385239  normal 
 
 
-
 
NC_013595  Sros_4988  extracellular solute-binding protein  26.13 
 
 
414 aa  76.3  0.000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.601947  normal 
 
 
-
 
NC_009504  BOV_A0617  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  31.27 
 
 
444 aa  75.9  0.000000000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4566  extracellular solute-binding protein  25.23 
 
 
453 aa  76.3  0.000000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008528  OEOE_1459  ABC-type sugar transport system, periplasmic component  25.8 
 
 
457 aa  75.9  0.000000000002  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2114  extracellular solute-binding protein family 1  27 
 
 
428 aa  75.1  0.000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3750  extracellular solute-binding protein  26.94 
 
 
433 aa  75.9  0.000000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.316129  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  23.3 
 
 
458 aa  75.9  0.000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
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