| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3216 |
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| Symbol | |
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| ID | 4075320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 211368 |
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| End bp | 212645 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638004725 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_611452 |
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| Protein GI | 99078194 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.949389 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGATGA CGAAATTCAA GGCGGCCGCT GCTGCCCTTG CCTTTGCTGC GGCCCCGGCC
GCAGCGGATG TGGACCTGGA ATTCTATTTC CCGGTGGCCG TTGGCGGAGC TGCGGCCGAC
ACCATCGAAG AGCTGACCGC GCAATATGTG GCCGAGAACG AGGGTGTGAA CATCGAAGCG
ATCTACGCGG GTTCCTATCA GGACACGGTC GCCAAGGCTC TGACCGCTGC GCGGGGCGGA
AACGCGCCGC AGCTGTCGGT GATCCTGTCG GTTGATATGT TCACCCTCCT GGACGAAGAC
CTCATCCTGC CGTTCGATGA CTTTGCCACC AGCGCAGAGG ACAAGGCCTG GCTCGACTCC
TTCTACCCCG CGTTTATGGA AAATTCCCAA ACTGGTGGAA AGACTTACGG TATTCCGTTC
CAACGCTCGA CTCCTGTTCT CTATTGGAAC AAAGAGGCCT TTGAAGCCGC CGGTCTCGAT
CCTGAAACGC CCCCGGCGAC CTGGGACGAG ATGGTCGAGA TGGGTAAGAA GCTTACGCTC
AAAGACGACG CGGGCAATGT GACCCAATGG GGTGTGCGCA TCCCATCTTC GGGGTTTCCG
TATTGGTTGT TCCAGGGGCT GACCACCGAG AATGACGCCA TCCTTGCCAA TGCCGATGGC
AATGAGGTGA ATTTCGATGA TCCCAAGGTT GTGGAAGCGC TCGACTATCT GGTGGATCTG
TCCAAAACGC ATGAAGTGAT GGCCCCCGGC ATCATCGAAT GGGGCGCAAC GCCCAAAGCG
TTCTTTGAAG GCCAGACCGC GATGATGTGG ACCTCGACTG GCAACCTGAC GAATGTTCGC
AACAATGCGC CTTTTGACTT TGGTGTCGCG ATGCTGCCCG CCAACAAACG TCGCGGAGCG
CCGACCGGCG GTGGCAATTT CTACCTCTTC AAAGGCGCAT CGGACGCCCA GGCAAAGGCC
GCATTTGATT TTGTCAAATG GATCTCCGCC CCGGAACAGT CGGCCAAATG GACCATCGCC
ACGGGCTATG TCGCCCCGCG TCCCGAAACC TGGGAGAGCG AAGCGATGAA AGCCTACGCT
GCTGAATTTC CCCCGGTTCT CGTTGCTCGT GATCAGCTTG AGCACGCGGT TGCGGAGCTT
TCGACCTATG AAAATCAGCG TGTGACCCGC ATTTTCAACG ATGCGCTTGC CGCTGCGATC
ACCGGTCAGA AAACCGCCGA AGAAGCCTTG AAAGAAGCGC AGGCGAAGGC AGACGCGATC
CTTCAGGACT ACCGTTAA
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| Protein sequence | MLMTKFKAAA AALAFAAAPA AADVDLEFYF PVAVGGAAAD TIEELTAQYV AENEGVNIEA
IYAGSYQDTV AKALTAARGG NAPQLSVILS VDMFTLLDED LILPFDDFAT SAEDKAWLDS
FYPAFMENSQ TGGKTYGIPF QRSTPVLYWN KEAFEAAGLD PETPPATWDE MVEMGKKLTL
KDDAGNVTQW GVRIPSSGFP YWLFQGLTTE NDAILANADG NEVNFDDPKV VEALDYLVDL
SKTHEVMAPG IIEWGATPKA FFEGQTAMMW TSTGNLTNVR NNAPFDFGVA MLPANKRRGA
PTGGGNFYLF KGASDAQAKA AFDFVKWISA PEQSAKWTIA TGYVAPRPET WESEAMKAYA
AEFPPVLVAR DQLEHAVAEL STYENQRVTR IFNDALAAAI TGQKTAEEAL KEAQAKADAI
LQDYR
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