Gene TM1040_3216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3216 
Symbol 
ID4075320 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp211368 
End bp212645 
Gene Length1278 bp 
Protein Length425 aa 
Translation table11 
GC content58% 
IMG OID638004725 
Productextracellular solute-binding protein 
Protein accessionYP_611452 
Protein GI99078194 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.949389 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGATGA CGAAATTCAA GGCGGCCGCT GCTGCCCTTG CCTTTGCTGC GGCCCCGGCC 
GCAGCGGATG TGGACCTGGA ATTCTATTTC CCGGTGGCCG TTGGCGGAGC TGCGGCCGAC
ACCATCGAAG AGCTGACCGC GCAATATGTG GCCGAGAACG AGGGTGTGAA CATCGAAGCG
ATCTACGCGG GTTCCTATCA GGACACGGTC GCCAAGGCTC TGACCGCTGC GCGGGGCGGA
AACGCGCCGC AGCTGTCGGT GATCCTGTCG GTTGATATGT TCACCCTCCT GGACGAAGAC
CTCATCCTGC CGTTCGATGA CTTTGCCACC AGCGCAGAGG ACAAGGCCTG GCTCGACTCC
TTCTACCCCG CGTTTATGGA AAATTCCCAA ACTGGTGGAA AGACTTACGG TATTCCGTTC
CAACGCTCGA CTCCTGTTCT CTATTGGAAC AAAGAGGCCT TTGAAGCCGC CGGTCTCGAT
CCTGAAACGC CCCCGGCGAC CTGGGACGAG ATGGTCGAGA TGGGTAAGAA GCTTACGCTC
AAAGACGACG CGGGCAATGT GACCCAATGG GGTGTGCGCA TCCCATCTTC GGGGTTTCCG
TATTGGTTGT TCCAGGGGCT GACCACCGAG AATGACGCCA TCCTTGCCAA TGCCGATGGC
AATGAGGTGA ATTTCGATGA TCCCAAGGTT GTGGAAGCGC TCGACTATCT GGTGGATCTG
TCCAAAACGC ATGAAGTGAT GGCCCCCGGC ATCATCGAAT GGGGCGCAAC GCCCAAAGCG
TTCTTTGAAG GCCAGACCGC GATGATGTGG ACCTCGACTG GCAACCTGAC GAATGTTCGC
AACAATGCGC CTTTTGACTT TGGTGTCGCG ATGCTGCCCG CCAACAAACG TCGCGGAGCG
CCGACCGGCG GTGGCAATTT CTACCTCTTC AAAGGCGCAT CGGACGCCCA GGCAAAGGCC
GCATTTGATT TTGTCAAATG GATCTCCGCC CCGGAACAGT CGGCCAAATG GACCATCGCC
ACGGGCTATG TCGCCCCGCG TCCCGAAACC TGGGAGAGCG AAGCGATGAA AGCCTACGCT
GCTGAATTTC CCCCGGTTCT CGTTGCTCGT GATCAGCTTG AGCACGCGGT TGCGGAGCTT
TCGACCTATG AAAATCAGCG TGTGACCCGC ATTTTCAACG ATGCGCTTGC CGCTGCGATC
ACCGGTCAGA AAACCGCCGA AGAAGCCTTG AAAGAAGCGC AGGCGAAGGC AGACGCGATC
CTTCAGGACT ACCGTTAA
 
Protein sequence
MLMTKFKAAA AALAFAAAPA AADVDLEFYF PVAVGGAAAD TIEELTAQYV AENEGVNIEA 
IYAGSYQDTV AKALTAARGG NAPQLSVILS VDMFTLLDED LILPFDDFAT SAEDKAWLDS
FYPAFMENSQ TGGKTYGIPF QRSTPVLYWN KEAFEAAGLD PETPPATWDE MVEMGKKLTL
KDDAGNVTQW GVRIPSSGFP YWLFQGLTTE NDAILANADG NEVNFDDPKV VEALDYLVDL
SKTHEVMAPG IIEWGATPKA FFEGQTAMMW TSTGNLTNVR NNAPFDFGVA MLPANKRRGA
PTGGGNFYLF KGASDAQAKA AFDFVKWISA PEQSAKWTIA TGYVAPRPET WESEAMKAYA
AEFPPVLVAR DQLEHAVAEL STYENQRVTR IFNDALAAAI TGQKTAEEAL KEAQAKADAI
LQDYR