More than 300 homologs were found in PanDaTox collection
for query gene TM1040_3216 on replicon NC_008043
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008043  TM1040_3216  extracellular solute-binding protein  100 
 
 
425 aa  860    Ruegeria sp. TM1040  Bacteria  normal  normal  0.949389 
 
 
-
 
NC_008751  Dvul_0224  extracellular solute-binding protein  56.94 
 
 
431 aa  500  1e-140  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0656  extracellular solute-binding protein family 1  57.18 
 
 
431 aa  497  1e-139  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.31335 
 
 
-
 
NC_008782  Ajs_3306  extracellular solute-binding protein  55.39 
 
 
431 aa  478  1e-134  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2659  extracellular solute-binding protein family 1  55.39 
 
 
431 aa  479  1e-134  Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00136924  n/a   
 
 
-
 
NC_010002  Daci_5306  extracellular solute-binding protein  52.94 
 
 
431 aa  454  1.0000000000000001e-126  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.457023 
 
 
-
 
NC_012669  Bcav_2846  extracellular solute-binding protein family 1  45.41 
 
 
435 aa  330  3e-89  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.687638 
 
 
-
 
NC_010511  M446_6664  extracellular solute-binding protein  38.4 
 
 
452 aa  266  5.999999999999999e-70  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0689323 
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  35.46 
 
 
441 aa  257  4e-67  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3270  extracellular solute-binding protein family 1  34.03 
 
 
435 aa  224  3e-57  Dickeya dadantii Ech703  Bacteria  normal  0.543416  n/a   
 
 
-
 
NC_012912  Dd1591_3386  extracellular solute-binding protein family 1  34.57 
 
 
440 aa  224  3e-57  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0631  extracellular solute-binding protein family 1  36.32 
 
 
435 aa  217  2.9999999999999998e-55  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0845  extracellular solute-binding protein family 1  36.19 
 
 
435 aa  216  9e-55  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1696  extracellular solute-binding protein  28.64 
 
 
436 aa  186  6e-46  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00506774  n/a   
 
 
-
 
NC_009616  Tmel_0753  extracellular solute-binding protein  28.01 
 
 
437 aa  179  8e-44  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0289  extracellular solute-binding protein  28.03 
 
 
437 aa  177  4e-43  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000019091  n/a   
 
 
-
 
NC_010003  Pmob_0721  extracellular solute-binding protein  27.79 
 
 
437 aa  171  2e-41  Petrotoga mobilis SJ95  Bacteria  normal  0.540981  n/a   
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  30.11 
 
 
445 aa  169  8e-41  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0955  extracellular solute-binding protein family 1  29.63 
 
 
437 aa  165  2.0000000000000002e-39  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.152307 
 
 
-
 
NC_013421  Pecwa_0117  glycerol-3-phosphate transporter periplasmic binding protein  26.61 
 
 
444 aa  163  5.0000000000000005e-39  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0125  glycerol-3-phosphate transporter periplasmic binding protein  26.61 
 
 
444 aa  160  5e-38  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  29.6 
 
 
458 aa  157  2e-37  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3861  glycerol-3-phosphate transporter periplasmic binding protein  27.95 
 
 
439 aa  157  3e-37  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4045  glycerol-3-phosphate transporter periplasmic binding protein  28.28 
 
 
439 aa  157  4e-37  Dickeya zeae Ech1591  Bacteria  normal  0.661181  n/a   
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  29.1 
 
 
458 aa  154  2.9999999999999998e-36  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2052  extracellular solute-binding protein  29 
 
 
438 aa  152  8e-36  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  28.86 
 
 
458 aa  152  8.999999999999999e-36  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  29.35 
 
 
458 aa  152  1e-35  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  29.06 
 
 
458 aa  152  1e-35  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  28.86 
 
 
458 aa  152  1e-35  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  29.06 
 
 
458 aa  152  1e-35  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  29.06 
 
 
458 aa  152  1e-35  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3021  glycerol-3-phosphate transporter periplasmic binding protein  28.22 
 
 
441 aa  151  2e-35  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  28.61 
 
 
458 aa  150  4e-35  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3697  glycerol-3-phosphate transporter periplasmic binding protein  27.54 
 
 
441 aa  150  5e-35  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2173  extracellular solute-binding protein family 1  26.65 
 
 
445 aa  150  5e-35  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.00822083  n/a   
 
 
-
 
NC_006348  BMA2744  glycerol-3-phosphate transporter periplasmic binding protein  27.19 
 
 
441 aa  150  6e-35  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3726  glycerol-3-phosphate transporter periplasmic binding protein  27.19 
 
 
441 aa  150  6e-35  Burkholderia pseudomallei 1710b  Bacteria  normal  0.268589  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3209  glycerol-3-phosphate transporter periplasmic binding protein  27.19 
 
 
441 aa  150  6e-35  Burkholderia mallei SAVP1  Bacteria  normal  0.0248662  n/a   
 
 
-
 
NC_008836  BMA10229_A1760  glycerol-3-phosphate transporter periplasmic binding protein  27.19 
 
 
441 aa  150  6e-35  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2794  glycerol-3-phosphate transporter periplasmic binding protein  27.19 
 
 
441 aa  150  6e-35  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1881  extracellular solute-binding protein family 1  29.02 
 
 
445 aa  149  9e-35  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.000340671  n/a   
 
 
-
 
NC_007644  Moth_1484  extracellular solute-binding protein  28.61 
 
 
444 aa  149  1.0000000000000001e-34  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.00000000000980441  normal 
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  28.61 
 
 
458 aa  148  2.0000000000000003e-34  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1264  glycerol-3-phosphate-binding periplasmic lipoprotein signal peptide  28.51 
 
 
438 aa  147  3e-34  Ralstonia solanacearum GMI1000  Bacteria  normal  0.400828  normal  0.517414 
 
 
-
 
NC_010465  YPK_3962  glycerol-3-phosphate transporter periplasmic binding protein  26.16 
 
 
439 aa  146  5e-34  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0256  glycerol-3-phosphate transporter periplasmic binding protein  26.16 
 
 
439 aa  146  5e-34  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3755  glycerol-3-phosphate transporter periplasmic binding protein  26.97 
 
 
441 aa  146  6e-34  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3856  glycerol-3-phosphate transporter periplasmic binding protein  25.68 
 
 
440 aa  146  7.0000000000000006e-34  Enterobacter sp. 638  Bacteria  normal  normal  0.64819 
 
 
-
 
NC_010682  Rpic_1092  extracellular solute-binding protein family 1  28.07 
 
 
438 aa  146  8.000000000000001e-34  Ralstonia pickettii 12J  Bacteria  normal  0.0503452  normal 
 
 
-
 
NC_014212  Mesil_0475  extracellular solute-binding protein family 1  27.92 
 
 
397 aa  145  1e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A3655  glycerol-3-phosphate transporter periplasmic binding protein  25.93 
 
 
439 aa  144  3e-33  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1185  extracellular solute-binding protein family 1  27.82 
 
 
438 aa  144  3e-33  Ralstonia pickettii 12D  Bacteria  normal  0.276437  normal 
 
 
-
 
NC_013946  Mrub_0322  extracellular solute-binding protein family 1  28.27 
 
 
435 aa  144  4e-33  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_3732  glycerol-3-phosphate transporter periplasmic binding protein  25.93 
 
 
438 aa  142  8e-33  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3759  glycerol-3-phosphate transporter periplasmic binding protein  25.34 
 
 
438 aa  142  9e-33  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A3826  glycerol-3-phosphate transporter periplasmic binding protein  25.34 
 
 
438 aa  142  9e-33  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C3869  glycerol-3-phosphate transporter periplasmic binding protein  25.34 
 
 
438 aa  142  9e-33  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_0476  extracellular solute-binding protein family 1  27.81 
 
 
401 aa  142  9.999999999999999e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A3928  glycerol-3-phosphate transporter periplasmic binding protein  25.34 
 
 
438 aa  142  9.999999999999999e-33  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03302  glycerol-3-phosphate transporter subunit  25.93 
 
 
438 aa  141  1.9999999999999998e-32  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0262  extracellular solute-binding protein family 1  25.93 
 
 
438 aa  141  1.9999999999999998e-32  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03255  hypothetical protein  25.93 
 
 
438 aa  141  1.9999999999999998e-32  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3870  glycerol-3-phosphate transporter periplasmic binding protein  25.93 
 
 
438 aa  141  1.9999999999999998e-32  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0263  glycerol-3-phosphate transporter periplasmic binding protein  25.93 
 
 
438 aa  141  1.9999999999999998e-32  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_3931  glycerol-3-phosphate transporter periplasmic binding protein  25.93 
 
 
438 aa  141  1.9999999999999998e-32  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3650  glycerol-3-phosphate transporter periplasmic binding protein  25.93 
 
 
438 aa  141  1.9999999999999998e-32  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4767  glycerol-3-phosphate transporter periplasmic binding protein  25.93 
 
 
438 aa  141  1.9999999999999998e-32  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.552805 
 
 
-
 
NC_009832  Spro_0234  glycerol-3-phosphate transporter periplasmic binding protein  24.7 
 
 
439 aa  140  4.999999999999999e-32  Serratia proteamaculans 568  Bacteria  normal  normal  0.500336 
 
 
-
 
NC_011094  SeSA_A3748  glycerol-3-phosphate transporter periplasmic binding protein  25.11 
 
 
438 aa  140  6e-32  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2730  extracellular solute-binding protein family 1  26.54 
 
 
399 aa  137  3.0000000000000003e-31  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  27.43 
 
 
441 aa  137  4e-31  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2709  glycerol-3-phosphate transporter periplasmic binding protein  25.81 
 
 
441 aa  137  5e-31  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2845  extracellular solute-binding protein family 1  26.74 
 
 
439 aa  136  8e-31  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2294  extracellular solute-binding protein family 1  27.14 
 
 
448 aa  135  9.999999999999999e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2712  glycerol-3-phosphate transporter periplasmic binding protein  25 
 
 
443 aa  134  1.9999999999999998e-30  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290307  n/a   
 
 
-
 
NC_010508  Bcenmc03_0374  glycerol-3-phosphate transporter periplasmic binding protein  25 
 
 
444 aa  135  1.9999999999999998e-30  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008542  Bcen2424_0395  glycerol-3-phosphate transporter periplasmic binding protein  25 
 
 
443 aa  134  1.9999999999999998e-30  Burkholderia cenocepacia HI2424  Bacteria  normal  0.954301  n/a   
 
 
-
 
NC_013946  Mrub_0791  extracellular solute-binding protein family 1  27.47 
 
 
399 aa  134  1.9999999999999998e-30  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.418273 
 
 
-
 
NC_008390  Bamb_0314  glycerol-3-phosphate transporter periplasmic binding protein  25.23 
 
 
444 aa  134  3e-30  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0298  glycerol-3-phosphate transporter periplasmic binding protein  25.75 
 
 
444 aa  134  3e-30  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0323  glycerol-3-phosphate transporter periplasmic binding protein  25.46 
 
 
444 aa  134  3e-30  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.839712 
 
 
-
 
NC_007973  Rmet_2055  extracellular solute-binding protein  26.88 
 
 
436 aa  130  5.0000000000000004e-29  Cupriavidus metallidurans CH34  Bacteria  normal  0.822621  normal 
 
 
-
 
NC_008010  Dgeo_2662  extracellular solute-binding protein  26.71 
 
 
433 aa  130  5.0000000000000004e-29  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.377519  n/a   
 
 
-
 
NC_007510  Bcep18194_A3492  glycerol-3-phosphate transporter periplasmic binding protein  24.54 
 
 
444 aa  129  1.0000000000000001e-28  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A0448  glycerol-3-phosphate transporter periplasmic binding protein  23.23 
 
 
441 aa  126  6e-28  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3422  ABC-type sugar transport systems permease component  27.04 
 
 
410 aa  126  8.000000000000001e-28  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3226  Transcriptional regulator  27.04 
 
 
410 aa  126  8.000000000000001e-28  Meiothermus silvanus DSM 9946  Bacteria  normal  0.101031  normal 
 
 
-
 
NC_010483  TRQ2_0340  extracellular solute-binding protein  25.6 
 
 
419 aa  125  2e-27  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3509  glycerol-3-phosphate transporter periplasmic binding protein  23.64 
 
 
441 aa  125  2e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.839022  normal  0.0272066 
 
 
-
 
NC_013202  Hmuk_2515  methyl-accepting chemotaxis sensory transducer  27.78 
 
 
833 aa  125  2e-27  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.0891124 
 
 
-
 
NC_011004  Rpal_5274  extracellular solute-binding protein family 1  26.26 
 
 
442 aa  124  3e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2738  extracellular solute-binding protein  25.17 
 
 
438 aa  124  4e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.345118  n/a   
 
 
-
 
NC_009486  Tpet_0322  extracellular solute-binding protein  25.29 
 
 
419 aa  124  5e-27  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3290  ABC glycerol-3-phosphate transporter, periplasmic binding protein, UgpB  24.94 
 
 
431 aa  121  1.9999999999999998e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  27.88 
 
 
414 aa  121  1.9999999999999998e-26  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0061  extracellular solute-binding protein family 1  26.76 
 
 
462 aa  121  1.9999999999999998e-26  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_4022  extracellular solute-binding protein  24.94 
 
 
431 aa  121  1.9999999999999998e-26  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1508  extracellular solute-binding protein family 1  26.72 
 
 
451 aa  121  1.9999999999999998e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.55774  normal 
 
 
-
 
NC_011886  Achl_2663  extracellular solute-binding protein family 1  28.65 
 
 
468 aa  120  3.9999999999999996e-26  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
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