More than 300 homologs were found in PanDaTox collection
for query gene Rcas_0113 on replicon NC_009767
Organism: Roseiflexus castenholzii DSM 13941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009767  Rcas_0113  extracellular solute-binding protein  100 
 
 
455 aa  934    Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.270734  normal 
 
 
-
 
NC_009523  RoseRS_4566  extracellular solute-binding protein  90.55 
 
 
453 aa  816    Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2195  extracellular solute-binding protein family 1  58.59 
 
 
450 aa  520  1e-146  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2294  extracellular solute-binding protein family 1  40.53 
 
 
448 aa  343  5e-93  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12848  sn-glycerol-3-phosphate-binding lipoprotein ugpB  43.9 
 
 
436 aa  305  1.0000000000000001e-81  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000000142723  normal 
 
 
-
 
NC_014158  Tpau_3527  extracellular solute-binding protein family 1  41.91 
 
 
436 aa  273  5.000000000000001e-72  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_18880  carbohydrate-binding protein  37.56 
 
 
460 aa  272  1e-71  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.141989  normal  0.173455 
 
 
-
 
NC_012669  Bcav_1508  extracellular solute-binding protein family 1  36.34 
 
 
451 aa  271  1e-71  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.55774  normal 
 
 
-
 
NC_009664  Krad_0297  extracellular solute-binding protein family 1  37.69 
 
 
453 aa  270  5.9999999999999995e-71  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0248346 
 
 
-
 
NC_012669  Bcav_0894  extracellular solute-binding protein family 1  38.38 
 
 
470 aa  266  5.999999999999999e-70  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.444762  normal  0.144357 
 
 
-
 
NC_011886  Achl_2663  extracellular solute-binding protein family 1  38.44 
 
 
468 aa  252  1e-65  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013174  Jden_2244  extracellular solute-binding protein family 1  35.78 
 
 
455 aa  246  4e-64  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.846858 
 
 
-
 
NC_008541  Arth_2948  extracellular solute-binding protein  38.92 
 
 
448 aa  244  3e-63  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29870  carbohydrate-binding protein  37.66 
 
 
448 aa  238  2e-61  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1527  extracellular solute-binding protein family 1  31.5 
 
 
465 aa  192  1e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.922727  normal  0.377984 
 
 
-
 
NC_013172  Bfae_30840  ABC-type sugar transport system, periplasmic component  32.09 
 
 
463 aa  184  2.0000000000000003e-45  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  30.55 
 
 
441 aa  156  7e-37  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6664  extracellular solute-binding protein  30.55 
 
 
452 aa  151  3e-35  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0689323 
 
 
-
 
NC_012912  Dd1591_3386  extracellular solute-binding protein family 1  28.85 
 
 
440 aa  143  8e-33  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  26.5 
 
 
445 aa  137  3.0000000000000003e-31  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3270  extracellular solute-binding protein family 1  28.73 
 
 
435 aa  136  6.0000000000000005e-31  Dickeya dadantii Ech703  Bacteria  normal  0.543416  n/a   
 
 
-
 
NC_014212  Mesil_0955  extracellular solute-binding protein family 1  28.17 
 
 
437 aa  134  1.9999999999999998e-30  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.152307 
 
 
-
 
NC_008751  Dvul_0224  extracellular solute-binding protein  28.96 
 
 
431 aa  131  2.0000000000000002e-29  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013171  Apre_0061  extracellular solute-binding protein family 1  26.77 
 
 
462 aa  130  4.0000000000000003e-29  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  28.53 
 
 
441 aa  129  8.000000000000001e-29  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2744  glycerol-3-phosphate transporter periplasmic binding protein  27.12 
 
 
441 aa  129  1.0000000000000001e-28  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3726  glycerol-3-phosphate transporter periplasmic binding protein  27.12 
 
 
441 aa  129  1.0000000000000001e-28  Burkholderia pseudomallei 1710b  Bacteria  normal  0.268589  n/a   
 
 
-
 
NC_007651  BTH_I3021  glycerol-3-phosphate transporter periplasmic binding protein  27.12 
 
 
441 aa  129  1.0000000000000001e-28  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3209  glycerol-3-phosphate transporter periplasmic binding protein  27.12 
 
 
441 aa  129  1.0000000000000001e-28  Burkholderia mallei SAVP1  Bacteria  normal  0.0248662  n/a   
 
 
-
 
NC_008836  BMA10229_A1760  glycerol-3-phosphate transporter periplasmic binding protein  27.12 
 
 
441 aa  129  1.0000000000000001e-28  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3697  glycerol-3-phosphate transporter periplasmic binding protein  27.12 
 
 
441 aa  129  1.0000000000000001e-28  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2794  glycerol-3-phosphate transporter periplasmic binding protein  27.12 
 
 
441 aa  129  1.0000000000000001e-28  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0117  glycerol-3-phosphate transporter periplasmic binding protein  25.6 
 
 
444 aa  128  2.0000000000000002e-28  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0125  glycerol-3-phosphate transporter periplasmic binding protein  25.33 
 
 
444 aa  127  3e-28  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3492  glycerol-3-phosphate transporter periplasmic binding protein  26.49 
 
 
444 aa  127  4.0000000000000003e-28  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0721  extracellular solute-binding protein  28.49 
 
 
437 aa  127  5e-28  Petrotoga mobilis SJ95  Bacteria  normal  0.540981  n/a   
 
 
-
 
NC_010003  Pmob_0289  extracellular solute-binding protein  28.02 
 
 
437 aa  126  6e-28  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000019091  n/a   
 
 
-
 
NC_010084  Bmul_0298  glycerol-3-phosphate transporter periplasmic binding protein  26.65 
 
 
444 aa  126  7e-28  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2712  glycerol-3-phosphate transporter periplasmic binding protein  26.49 
 
 
443 aa  126  7e-28  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290307  n/a   
 
 
-
 
NC_010508  Bcenmc03_0374  glycerol-3-phosphate transporter periplasmic binding protein  26.49 
 
 
444 aa  126  7e-28  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008542  Bcen2424_0395  glycerol-3-phosphate transporter periplasmic binding protein  26.49 
 
 
443 aa  126  7e-28  Burkholderia cenocepacia HI2424  Bacteria  normal  0.954301  n/a   
 
 
-
 
NC_010551  BamMC406_0323  glycerol-3-phosphate transporter periplasmic binding protein  26.65 
 
 
444 aa  125  1e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.839712 
 
 
-
 
NC_011769  DvMF_0656  extracellular solute-binding protein family 1  27.29 
 
 
431 aa  125  1e-27  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.31335 
 
 
-
 
NC_008390  Bamb_0314  glycerol-3-phosphate transporter periplasmic binding protein  26.65 
 
 
444 aa  125  1e-27  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3755  glycerol-3-phosphate transporter periplasmic binding protein  26.89 
 
 
441 aa  125  2e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2055  extracellular solute-binding protein  27.83 
 
 
436 aa  124  3e-27  Cupriavidus metallidurans CH34  Bacteria  normal  0.822621  normal 
 
 
-
 
NC_012917  PC1_0631  extracellular solute-binding protein family 1  27.58 
 
 
435 aa  124  3e-27  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0845  extracellular solute-binding protein family 1  27.3 
 
 
435 aa  123  7e-27  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0322  extracellular solute-binding protein family 1  27.99 
 
 
435 aa  122  9e-27  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_4045  glycerol-3-phosphate transporter periplasmic binding protein  25.21 
 
 
439 aa  122  9.999999999999999e-27  Dickeya zeae Ech1591  Bacteria  normal  0.661181  n/a   
 
 
-
 
NC_010622  Bphy_2709  glycerol-3-phosphate transporter periplasmic binding protein  27.21 
 
 
441 aa  122  9.999999999999999e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3861  glycerol-3-phosphate transporter periplasmic binding protein  24.93 
 
 
439 aa  121  1.9999999999999998e-26  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03302  glycerol-3-phosphate transporter subunit  24.59 
 
 
438 aa  119  7.999999999999999e-26  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0262  extracellular solute-binding protein family 1  24.59 
 
 
438 aa  119  7.999999999999999e-26  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4767  glycerol-3-phosphate transporter periplasmic binding protein  24.59 
 
 
438 aa  119  7.999999999999999e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.552805 
 
 
-
 
NC_012892  B21_03255  hypothetical protein  24.59 
 
 
438 aa  119  7.999999999999999e-26  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3650  glycerol-3-phosphate transporter periplasmic binding protein  24.59 
 
 
438 aa  119  7.999999999999999e-26  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0263  glycerol-3-phosphate transporter periplasmic binding protein  24.59 
 
 
438 aa  119  7.999999999999999e-26  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2738  extracellular solute-binding protein  25.75 
 
 
438 aa  119  9.999999999999999e-26  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.345118  n/a   
 
 
-
 
NC_010658  SbBS512_E3870  glycerol-3-phosphate transporter periplasmic binding protein  24.59 
 
 
438 aa  119  9.999999999999999e-26  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0448  glycerol-3-phosphate transporter periplasmic binding protein  26.01 
 
 
441 aa  119  1.9999999999999998e-25  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_3931  glycerol-3-phosphate transporter periplasmic binding protein  24.32 
 
 
438 aa  119  1.9999999999999998e-25  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3509  glycerol-3-phosphate transporter periplasmic binding protein  25.78 
 
 
441 aa  117  3e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  0.839022  normal  0.0272066 
 
 
-
 
NC_008043  TM1040_3216  extracellular solute-binding protein  27.35 
 
 
425 aa  117  3.9999999999999997e-25  Ruegeria sp. TM1040  Bacteria  normal  normal  0.949389 
 
 
-
 
NC_010498  EcSMS35_3732  glycerol-3-phosphate transporter periplasmic binding protein  24.58 
 
 
438 aa  117  5e-25  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2659  extracellular solute-binding protein family 1  27.88 
 
 
431 aa  116  6.9999999999999995e-25  Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00136924  n/a   
 
 
-
 
NC_010465  YPK_3962  glycerol-3-phosphate transporter periplasmic binding protein  24.16 
 
 
439 aa  115  1.0000000000000001e-24  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3306  extracellular solute-binding protein  27.58 
 
 
431 aa  115  1.0000000000000001e-24  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008783  BARBAKC583_0349  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  27.08 
 
 
441 aa  116  1.0000000000000001e-24  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0256  glycerol-3-phosphate transporter periplasmic binding protein  24.16 
 
 
439 aa  115  1.0000000000000001e-24  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3655  glycerol-3-phosphate transporter periplasmic binding protein  24.16 
 
 
439 aa  115  2.0000000000000002e-24  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2173  extracellular solute-binding protein family 1  26.72 
 
 
445 aa  114  3e-24  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.00822083  n/a   
 
 
-
 
NC_013411  GYMC61_2845  extracellular solute-binding protein family 1  25.5 
 
 
439 aa  114  3e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_0234  glycerol-3-phosphate transporter periplasmic binding protein  25.41 
 
 
439 aa  114  3e-24  Serratia proteamaculans 568  Bacteria  normal  normal  0.500336 
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.11 
 
 
458 aa  114  5e-24  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.68 
 
 
458 aa  113  6e-24  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011149  SeAg_B3759  glycerol-3-phosphate transporter periplasmic binding protein  24.72 
 
 
438 aa  113  6e-24  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C3869  glycerol-3-phosphate transporter periplasmic binding protein  24.72 
 
 
438 aa  113  6e-24  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.68 
 
 
458 aa  113  6e-24  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A3826  glycerol-3-phosphate transporter periplasmic binding protein  24.72 
 
 
438 aa  113  6e-24  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  23.68 
 
 
458 aa  113  7.000000000000001e-24  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  23.68 
 
 
458 aa  113  7.000000000000001e-24  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.68 
 
 
458 aa  113  8.000000000000001e-24  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.68 
 
 
458 aa  113  8.000000000000001e-24  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2052  extracellular solute-binding protein  28.37 
 
 
438 aa  112  9e-24  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A3928  glycerol-3-phosphate transporter periplasmic binding protein  24.72 
 
 
438 aa  113  9e-24  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  23.68 
 
 
458 aa  112  1.0000000000000001e-23  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1696  extracellular solute-binding protein  27.62 
 
 
436 aa  112  1.0000000000000001e-23  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00506774  n/a   
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.86 
 
 
458 aa  111  2.0000000000000002e-23  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5306  extracellular solute-binding protein  26.06 
 
 
431 aa  112  2.0000000000000002e-23  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.457023 
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  23.41 
 
 
458 aa  111  3e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_3686  extracellular solute-binding protein  26.91 
 
 
460 aa  110  3e-23  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_012852  Rleg_6261  extracellular solute-binding protein family 1  27.13 
 
 
428 aa  111  3e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.689417 
 
 
-
 
NC_009616  Tmel_0753  extracellular solute-binding protein  27.98 
 
 
437 aa  111  3e-23  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A3748  glycerol-3-phosphate transporter periplasmic binding protein  24.44 
 
 
438 aa  110  5e-23  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1155  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  27.58 
 
 
434 aa  110  7.000000000000001e-23  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3856  glycerol-3-phosphate transporter periplasmic binding protein  23.61 
 
 
440 aa  108  1e-22  Enterobacter sp. 638  Bacteria  normal  normal  0.64819 
 
 
-
 
NC_009485  BBta_0714  ABC transporter substrate-binding protein  24.82 
 
 
429 aa  109  1e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1881  extracellular solute-binding protein family 1  26.5 
 
 
445 aa  108  2e-22  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.000340671  n/a   
 
 
-
 
NC_009654  Mmwyl1_0604  extracellular solute-binding protein  26.67 
 
 
433 aa  108  2e-22  Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  0.00010036 
 
 
-
 
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