Gene Smed_4644 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4644 
Symbol 
ID5319289 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp1153481 
End bp1154710 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content59% 
IMG OID640776442 
Productextracellular solute-binding protein 
Protein accessionYP_001313374 
Protein GI150376778 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0265502 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0904039 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACAATCG CTTACAAAGC TACCTGTTTC ACGCTTGCCT TGCTCGGATC GACCGCCCTC 
GGCGGCTTTG CCGCACAGGC TGCCGATCAG GAGATCAGCT GGATCTATTG CGGCGACAAG
ATTGATCCGA TCCACGAGAA ATACATCAAG GAATGGGAGG GCAAGAATCC CGGTTGGAAG
GTCACGCCTG AAGTCGTCGG TTGGGCCCAG TGCCAGGACA AGGCGACGAC GCTCGCCGTG
GCCGGCACGC CGGTCGGCAT GGCCTATGTG GGTTCCCGCA CCCTCAAGGA ATTCGCCGAG
AACGAGCTGA TCATCCCGGT TCCAATGACC GAGGAAGAGA AAAAGAGCTA TTACCCGAAC
ATCGTCGAGA CGGTGACCTT CAACGACAAT CAGTGGGGCG TGCCGATCGC CTTTTCGACC
AAGGCGCTCT ACTGGAACAA GGACCTATTC AAGCAGGCGG GCCTCGACCC GGAGACGCCG
CCGAAGAGCT GGGCCGAAGA GATCGCCTTT GCGAAGCAAA TCAAGGAAAA GACCGGAATT
GCAGGTTACG GCCTTCCCGC CAAGACATTC GACAACACGA TGCATCAATT CATGCATTGG
GTTTACACCA ATAACGGCAA GGTTATCGAT GGCGACGAGA TCGTCATGGA CAGCCCGGAA
GTGCTCGCGG CGCTGCAGGC CTACAAGGAC CTTGTGCCCT ATTCTGTCGA AGGGGCGACG
GCCTACGAGC AGAACGAGAT TCGCGCCATT TTCCTCGACG GCAAGGTGGG CATGATCCAG
TCCGGCTCAG GCGCCGCCGC ATTGCTGAAG GATACCAAGA TCAACTGGGG CATCGCGCCG
CTGCCGCTCG GCCCTTCGGC CAAGGGCGAA GGCACGCTCC TCATCACCGA CAGCCTGGCG
ATCTTCCAGG GCACGGGCGT CGAGGAAAAG GCGATCGAGT TTGCCAAGTT CATCACATCT
CCCGGTCCGC AGGGCGAGTA TGAACTGCAG GGAGGCGCAG GGCTGACACC GCTGCGCCCG
TCGCCGATGG TCGATGAGTT CGTAAAGGCC GACCCGTCGT GGAAGCCATT CATCGACGGG
ATCGCCTATG GAGGTCCGGA GCCGCTCTTC AAGGACTACA AGGGCTTCCA GAACGCTATC
ATCGACATGG TCCAGTCGGT CGTGACCGGC AAGTCCGAGC CGGTGGACGC TTTGAAGAAG
GCGGCAGCTG ACATCGAACA GTATAAGTAA
 
Protein sequence
MTIAYKATCF TLALLGSTAL GGFAAQAADQ EISWIYCGDK IDPIHEKYIK EWEGKNPGWK 
VTPEVVGWAQ CQDKATTLAV AGTPVGMAYV GSRTLKEFAE NELIIPVPMT EEEKKSYYPN
IVETVTFNDN QWGVPIAFST KALYWNKDLF KQAGLDPETP PKSWAEEIAF AKQIKEKTGI
AGYGLPAKTF DNTMHQFMHW VYTNNGKVID GDEIVMDSPE VLAALQAYKD LVPYSVEGAT
AYEQNEIRAI FLDGKVGMIQ SGSGAAALLK DTKINWGIAP LPLGPSAKGE GTLLITDSLA
IFQGTGVEEK AIEFAKFITS PGPQGEYELQ GGAGLTPLRP SPMVDEFVKA DPSWKPFIDG
IAYGGPEPLF KDYKGFQNAI IDMVQSVVTG KSEPVDALKK AAADIEQYK