More than 300 homologs were found in PanDaTox collection
for query gene Tpau_3527 on replicon NC_014158
Organism: Tsukamurella paurometabola DSM 20162



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014158  Tpau_3527  extracellular solute-binding protein family 1  100 
 
 
436 aa  875    Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12848  sn-glycerol-3-phosphate-binding lipoprotein ugpB  47.34 
 
 
436 aa  363  2e-99  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000000142723  normal 
 
 
-
 
NC_009664  Krad_0297  extracellular solute-binding protein family 1  41.4 
 
 
453 aa  329  5.0000000000000004e-89  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0248346 
 
 
-
 
NC_011886  Achl_2663  extracellular solute-binding protein family 1  42.11 
 
 
468 aa  318  9e-86  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013521  Sked_18880  carbohydrate-binding protein  41.16 
 
 
460 aa  309  5.9999999999999995e-83  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.141989  normal  0.173455 
 
 
-
 
NC_013174  Jden_2244  extracellular solute-binding protein family 1  40.95 
 
 
455 aa  305  9.000000000000001e-82  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.846858 
 
 
-
 
NC_013172  Bfae_29870  carbohydrate-binding protein  40.45 
 
 
448 aa  302  9e-81  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2294  extracellular solute-binding protein family 1  41.77 
 
 
448 aa  300  4e-80  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0113  extracellular solute-binding protein  38.96 
 
 
455 aa  296  4e-79  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.270734  normal 
 
 
-
 
NC_011831  Cagg_2195  extracellular solute-binding protein family 1  40.93 
 
 
450 aa  295  2e-78  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_2948  extracellular solute-binding protein  43.47 
 
 
448 aa  291  1e-77  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4566  extracellular solute-binding protein  41.78 
 
 
453 aa  290  5.0000000000000004e-77  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0894  extracellular solute-binding protein family 1  37.94 
 
 
470 aa  273  3e-72  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.444762  normal  0.144357 
 
 
-
 
NC_012669  Bcav_1508  extracellular solute-binding protein family 1  34.88 
 
 
451 aa  229  6e-59  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.55774  normal 
 
 
-
 
NC_012669  Bcav_1527  extracellular solute-binding protein family 1  33.24 
 
 
465 aa  189  8e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.922727  normal  0.377984 
 
 
-
 
NC_013172  Bfae_30840  ABC-type sugar transport system, periplasmic component  32.65 
 
 
463 aa  185  1.0000000000000001e-45  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  29.85 
 
 
441 aa  150  5e-35  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3386  extracellular solute-binding protein family 1  30.27 
 
 
440 aa  145  2e-33  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6664  extracellular solute-binding protein  28.87 
 
 
452 aa  139  8.999999999999999e-32  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0689323 
 
 
-
 
NC_012880  Dd703_3270  extracellular solute-binding protein family 1  28.78 
 
 
435 aa  137  4e-31  Dickeya dadantii Ech703  Bacteria  normal  0.543416  n/a   
 
 
-
 
NC_012917  PC1_0631  extracellular solute-binding protein family 1  28.57 
 
 
435 aa  135  9.999999999999999e-31  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0845  extracellular solute-binding protein family 1  27.98 
 
 
435 aa  130  3e-29  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  26.74 
 
 
441 aa  127  5e-28  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3422  ABC-type sugar transport systems permease component  26.84 
 
 
410 aa  122  9.999999999999999e-27  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3226  Transcriptional regulator  26.84 
 
 
410 aa  122  9.999999999999999e-27  Meiothermus silvanus DSM 9946  Bacteria  normal  0.101031  normal 
 
 
-
 
NC_011769  DvMF_0656  extracellular solute-binding protein family 1  27.01 
 
 
431 aa  120  6e-26  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.31335 
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  26.48 
 
 
407 aa  119  7.999999999999999e-26  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  25.6 
 
 
445 aa  119  7.999999999999999e-26  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3216  extracellular solute-binding protein  26.97 
 
 
425 aa  119  9.999999999999999e-26  Ruegeria sp. TM1040  Bacteria  normal  normal  0.949389 
 
 
-
 
NC_008751  Dvul_0224  extracellular solute-binding protein  26.48 
 
 
431 aa  117  3e-25  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_0117  glycerol-3-phosphate transporter periplasmic binding protein  27.62 
 
 
444 aa  117  6e-25  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0125  glycerol-3-phosphate transporter periplasmic binding protein  27.4 
 
 
444 aa  116  8.999999999999998e-25  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03302  glycerol-3-phosphate transporter subunit  28.48 
 
 
438 aa  111  2.0000000000000002e-23  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0262  extracellular solute-binding protein family 1  28.48 
 
 
438 aa  111  2.0000000000000002e-23  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2049  extracellular solute-binding protein family 1  26.8 
 
 
438 aa  112  2.0000000000000002e-23  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.266449  n/a   
 
 
-
 
NC_010658  SbBS512_E3870  glycerol-3-phosphate transporter periplasmic binding protein  28.31 
 
 
438 aa  112  2.0000000000000002e-23  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0263  glycerol-3-phosphate transporter periplasmic binding protein  28.48 
 
 
438 aa  111  2.0000000000000002e-23  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2057  extracellular solute-binding protein family 1  28.07 
 
 
421 aa  111  2.0000000000000002e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  0.112802  normal  0.296802 
 
 
-
 
NC_011353  ECH74115_4767  glycerol-3-phosphate transporter periplasmic binding protein  28.48 
 
 
438 aa  111  2.0000000000000002e-23  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.552805 
 
 
-
 
NC_009800  EcHS_A3650  glycerol-3-phosphate transporter periplasmic binding protein  28.48 
 
 
438 aa  111  2.0000000000000002e-23  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03255  hypothetical protein  28.48 
 
 
438 aa  111  2.0000000000000002e-23  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3931  glycerol-3-phosphate transporter periplasmic binding protein  28.18 
 
 
438 aa  110  4.0000000000000004e-23  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0448  glycerol-3-phosphate transporter periplasmic binding protein  30.31 
 
 
441 aa  110  4.0000000000000004e-23  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2173  extracellular solute-binding protein family 1  28.37 
 
 
445 aa  110  5e-23  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.00822083  n/a   
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.13 
 
 
458 aa  110  5e-23  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.88 
 
 
458 aa  110  6e-23  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3509  glycerol-3-phosphate transporter periplasmic binding protein  30 
 
 
441 aa  110  6e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  0.839022  normal  0.0272066 
 
 
-
 
NC_010003  Pmob_0721  extracellular solute-binding protein  26.12 
 
 
437 aa  110  7.000000000000001e-23  Petrotoga mobilis SJ95  Bacteria  normal  0.540981  n/a   
 
 
-
 
NC_012912  Dd1591_4045  glycerol-3-phosphate transporter periplasmic binding protein  27.25 
 
 
439 aa  109  8.000000000000001e-23  Dickeya zeae Ech1591  Bacteria  normal  0.661181  n/a   
 
 
-
 
NC_012880  Dd703_3861  glycerol-3-phosphate transporter periplasmic binding protein  27.25 
 
 
439 aa  109  8.000000000000001e-23  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  23.88 
 
 
458 aa  108  1e-22  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3732  glycerol-3-phosphate transporter periplasmic binding protein  28.18 
 
 
438 aa  109  1e-22  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A3826  glycerol-3-phosphate transporter periplasmic binding protein  27.4 
 
 
438 aa  109  1e-22  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3759  glycerol-3-phosphate transporter periplasmic binding protein  27.4 
 
 
438 aa  109  1e-22  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C3869  glycerol-3-phosphate transporter periplasmic binding protein  27.4 
 
 
438 aa  109  1e-22  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.57 
 
 
458 aa  108  1e-22  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.88 
 
 
458 aa  108  2e-22  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  23.88 
 
 
458 aa  108  2e-22  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.88 
 
 
458 aa  108  2e-22  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.88 
 
 
458 aa  108  2e-22  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  23.88 
 
 
458 aa  108  2e-22  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0289  extracellular solute-binding protein  26.12 
 
 
437 aa  108  3e-22  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000019091  n/a   
 
 
-
 
NC_011205  SeD_A3928  glycerol-3-phosphate transporter periplasmic binding protein  27.12 
 
 
438 aa  107  3e-22  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0322  extracellular solute-binding protein family 1  25.45 
 
 
435 aa  107  4e-22  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A3748  glycerol-3-phosphate transporter periplasmic binding protein  27.12 
 
 
438 aa  106  8e-22  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I3021  glycerol-3-phosphate transporter periplasmic binding protein  29.38 
 
 
441 aa  105  1e-21  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0129  extracellular solute-binding protein family 1  29.94 
 
 
426 aa  105  1e-21  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.57996  n/a   
 
 
-
 
NC_009074  BURPS668_3697  glycerol-3-phosphate transporter periplasmic binding protein  29.25 
 
 
441 aa  105  1e-21  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1881  extracellular solute-binding protein family 1  27.81 
 
 
445 aa  105  2e-21  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.000340671  n/a   
 
 
-
 
NC_014212  Mesil_0955  extracellular solute-binding protein family 1  26.12 
 
 
437 aa  105  2e-21  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.152307 
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  23.7 
 
 
458 aa  104  2e-21  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0234  glycerol-3-phosphate transporter periplasmic binding protein  26.99 
 
 
439 aa  105  2e-21  Serratia proteamaculans 568  Bacteria  normal  normal  0.500336 
 
 
-
 
NC_006348  BMA2744  glycerol-3-phosphate transporter periplasmic binding protein  29.25 
 
 
441 aa  104  3e-21  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3726  glycerol-3-phosphate transporter periplasmic binding protein  29.25 
 
 
441 aa  104  3e-21  Burkholderia pseudomallei 1710b  Bacteria  normal  0.268589  n/a   
 
 
-
 
NC_007644  Moth_1484  extracellular solute-binding protein  27.81 
 
 
444 aa  104  3e-21  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.00000000000980441  normal 
 
 
-
 
NC_008785  BMASAVP1_A3209  glycerol-3-phosphate transporter periplasmic binding protein  29.25 
 
 
441 aa  104  3e-21  Burkholderia mallei SAVP1  Bacteria  normal  0.0248662  n/a   
 
 
-
 
NC_008836  BMA10229_A1760  glycerol-3-phosphate transporter periplasmic binding protein  29.25 
 
 
441 aa  104  3e-21  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2794  glycerol-3-phosphate transporter periplasmic binding protein  29.25 
 
 
441 aa  104  3e-21  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3856  glycerol-3-phosphate transporter periplasmic binding protein  27.39 
 
 
440 aa  104  3e-21  Enterobacter sp. 638  Bacteria  normal  normal  0.64819 
 
 
-
 
NC_010622  Bphy_2709  glycerol-3-phosphate transporter periplasmic binding protein  29.25 
 
 
441 aa  104  3e-21  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_3755  glycerol-3-phosphate transporter periplasmic binding protein  29.25 
 
 
441 aa  104  4e-21  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1696  extracellular solute-binding protein  24.31 
 
 
436 aa  104  4e-21  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00506774  n/a   
 
 
-
 
NC_013171  Apre_0061  extracellular solute-binding protein family 1  28.17 
 
 
462 aa  103  5e-21  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3492  glycerol-3-phosphate transporter periplasmic binding protein  27.45 
 
 
444 aa  103  6e-21  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_0374  glycerol-3-phosphate transporter periplasmic binding protein  27.89 
 
 
444 aa  103  6e-21  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2712  glycerol-3-phosphate transporter periplasmic binding protein  27.89 
 
 
443 aa  103  7e-21  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290307  n/a   
 
 
-
 
NC_008542  Bcen2424_0395  glycerol-3-phosphate transporter periplasmic binding protein  27.89 
 
 
443 aa  103  7e-21  Burkholderia cenocepacia HI2424  Bacteria  normal  0.954301  n/a   
 
 
-
 
NC_008390  Bamb_0314  glycerol-3-phosphate transporter periplasmic binding protein  28.84 
 
 
444 aa  102  1e-20  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0298  glycerol-3-phosphate transporter periplasmic binding protein  29.06 
 
 
444 aa  102  1e-20  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0323  glycerol-3-phosphate transporter periplasmic binding protein  28.84 
 
 
444 aa  102  2e-20  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.839712 
 
 
-
 
NC_007958  RPD_3151  extracellular solute-binding protein  30.06 
 
 
426 aa  101  3e-20  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.345086 
 
 
-
 
NC_007494  RSP_3290  ABC glycerol-3-phosphate transporter, periplasmic binding protein, UgpB  27.14 
 
 
431 aa  99  1e-19  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2659  extracellular solute-binding protein family 1  25.43 
 
 
431 aa  99.4  1e-19  Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00136924  n/a   
 
 
-
 
NC_009050  Rsph17029_4022  extracellular solute-binding protein  27.14 
 
 
431 aa  99.4  1e-19  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_0256  glycerol-3-phosphate transporter periplasmic binding protein  25.84 
 
 
439 aa  98.6  2e-19  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3962  glycerol-3-phosphate transporter periplasmic binding protein  25.84 
 
 
439 aa  98.6  2e-19  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2845  extracellular solute-binding protein family 1  24.31 
 
 
439 aa  97.8  3e-19  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007778  RPB_0174  extracellular solute-binding protein  28.9 
 
 
426 aa  98.2  3e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.396862  normal 
 
 
-
 
NC_012669  Bcav_2846  extracellular solute-binding protein family 1  25.97 
 
 
435 aa  97.8  3e-19  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.687638 
 
 
-
 
NC_010159  YpAngola_A3655  glycerol-3-phosphate transporter periplasmic binding protein  25.84 
 
 
439 aa  98.2  3e-19  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
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