Gene Caci_7906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_7906 
Symbol 
ID8339283 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp9177412 
End bp9178674 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content67% 
IMG OID644960990 
Productextracellular solute-binding protein family 1 
Protein accessionYP_003118570 
Protein GI256397006 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.819994 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCCGAA AGGCGTTGGT GCTGGTCGGC GCCGGGGCTC TGGCCCTGGC CGCGACCGGC 
TGTTCCTCCT CGAAATCCGC GTCGTCCGGA CAGGCCGACT CCGGTCCGGT CACCCTCACC
TACGGCATCT GGGACACCAA GCAGAAGCCG GCGATGCAGG AGATCGCCGA CGCCTTCCAC
GCGGCGCACC CGAACATCAC CATCGACATC CAGCTGACGC CGAACGCCGA CTACTGGACC
AAGCTCCAGA CCGCGGCCGC CTCCGGGACC GCGCCGGACG TCTTCTGGAT GAACACCCCG
CGCGTCGGCC TGTACGCCGG CCAGCACCAG CTGCTCTCGC TGTCGGACAA GCCCGGCTTC
GACAACAGCC CGTTCCCGAA GTCCCTGAAC GCCAGCTACA CCCTCGACGG CAAGCAGTAC
GGCATGCCGA AGGACTTCGA CACCGTCGGG CTCTGGTACA ACAAGAAGCT TTTCGACGCC
GCCGGGGTGA AATACCCGAC CGCGAGTTGG ACCTGGCAGG ACGTGATCAG CGCGGCCCAG
AAGCTGAACG ACCCGGGCAA GGGCGTGTGG GGCATCGCCT CGCCGGACTG GACGCAGGAG
AACCTGTTCA ACACCATCCT CCAGGCCGGC GGCCAGCCCA TCACCCCGGA CCACAAGAAG
TCCGGGTTCG ACGACCCGAA GAGCGTCGCC GGCCTGCAGT ACGCGCTGGA CTTCATCACC
AAGTACCACG TCTCGCCGAC CGCGCAGCAG ATGACCGACA CCCAGCCGGA CCAGCTGTTC
GCCTCGGGCA AGGCGGCCAT GTTCGCCGAC GGCGACTACG ACATGCCCGA GTACAAGGCG
GCGGCCGGCC TGGACGCCGA CGTCGCGCCG CTGCCGGCCG GTCCGGACGG CAAGCAGGCG
ACCGTCATCA ACGGCCTGGC GAACGTCATC TACGCCAAGA CCAAGCATCC GCAGGCCGCC
TGGGAGTTCG TGCAGTTCCT CGGCTCCAAG CAGGCCAACG AGATCCAGGC CAAGACCGGC
ACCGTGATCC CGGCCTACAA CGGTCTGTCC GCGACCTGGG TCGCCTCGAC CCCGCAGTAC
CACCTGCAGT CCTTCATCGA CCAGCTGGCC GTCGCGGTGC CCTACCCGGT GTCGAAGAAC
ACCGCGGCCT GGGCCACGCC GATGCAGGCC ACGCTGGACC AGATCTGGGG CGGCAAGCTC
GACCTGCAGA CCGGCGCCAA GCAGATCGCG GACCAGATGA ACGCCGAACT GGCCAAGGAG
TAG
 
Protein sequence
MFRKALVLVG AGALALAATG CSSSKSASSG QADSGPVTLT YGIWDTKQKP AMQEIADAFH 
AAHPNITIDI QLTPNADYWT KLQTAAASGT APDVFWMNTP RVGLYAGQHQ LLSLSDKPGF
DNSPFPKSLN ASYTLDGKQY GMPKDFDTVG LWYNKKLFDA AGVKYPTASW TWQDVISAAQ
KLNDPGKGVW GIASPDWTQE NLFNTILQAG GQPITPDHKK SGFDDPKSVA GLQYALDFIT
KYHVSPTAQQ MTDTQPDQLF ASGKAAMFAD GDYDMPEYKA AAGLDADVAP LPAGPDGKQA
TVINGLANVI YAKTKHPQAA WEFVQFLGSK QANEIQAKTG TVIPAYNGLS ATWVASTPQY
HLQSFIDQLA VAVPYPVSKN TAAWATPMQA TLDQIWGGKL DLQTGAKQIA DQMNAELAKE