More than 300 homologs were found in PanDaTox collection
for query gene RoseRS_4566 on replicon NC_009523
Organism: Roseiflexus sp. RS-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009523  RoseRS_4566  extracellular solute-binding protein  100 
 
 
453 aa  927    Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0113  extracellular solute-binding protein  90.99 
 
 
455 aa  816    Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.270734  normal 
 
 
-
 
NC_011831  Cagg_2195  extracellular solute-binding protein family 1  58.72 
 
 
450 aa  514  1e-144  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2294  extracellular solute-binding protein family 1  41.11 
 
 
448 aa  342  8e-93  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12848  sn-glycerol-3-phosphate-binding lipoprotein ugpB  44.16 
 
 
436 aa  303  3.0000000000000004e-81  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000000142723  normal 
 
 
-
 
NC_013521  Sked_18880  carbohydrate-binding protein  37.78 
 
 
460 aa  270  2.9999999999999997e-71  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.141989  normal  0.173455 
 
 
-
 
NC_012669  Bcav_0894  extracellular solute-binding protein family 1  39.14 
 
 
470 aa  268  1e-70  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.444762  normal  0.144357 
 
 
-
 
NC_014158  Tpau_3527  extracellular solute-binding protein family 1  41.91 
 
 
436 aa  266  5.999999999999999e-70  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1508  extracellular solute-binding protein family 1  35.6 
 
 
451 aa  265  8.999999999999999e-70  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.55774  normal 
 
 
-
 
NC_009664  Krad_0297  extracellular solute-binding protein family 1  36.96 
 
 
453 aa  263  4e-69  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0248346 
 
 
-
 
NC_013174  Jden_2244  extracellular solute-binding protein family 1  36.24 
 
 
455 aa  251  2e-65  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.846858 
 
 
-
 
NC_011886  Achl_2663  extracellular solute-binding protein family 1  38.18 
 
 
468 aa  242  1e-62  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_2948  extracellular solute-binding protein  37.38 
 
 
448 aa  240  4e-62  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29870  carbohydrate-binding protein  38.18 
 
 
448 aa  239  8e-62  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1527  extracellular solute-binding protein family 1  32.13 
 
 
465 aa  191  2.9999999999999997e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.922727  normal  0.377984 
 
 
-
 
NC_013172  Bfae_30840  ABC-type sugar transport system, periplasmic component  31.19 
 
 
463 aa  173  5e-42  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  28.34 
 
 
441 aa  153  7e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6664  extracellular solute-binding protein  29.43 
 
 
452 aa  143  6e-33  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0689323 
 
 
-
 
NC_012912  Dd1591_3386  extracellular solute-binding protein family 1  27.73 
 
 
440 aa  135  9.999999999999999e-31  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0289  extracellular solute-binding protein  28.37 
 
 
437 aa  135  1.9999999999999998e-30  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000019091  n/a   
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  26.53 
 
 
445 aa  134  3e-30  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0721  extracellular solute-binding protein  28.85 
 
 
437 aa  133  6e-30  Petrotoga mobilis SJ95  Bacteria  normal  0.540981  n/a   
 
 
-
 
NC_014212  Mesil_0955  extracellular solute-binding protein family 1  27.49 
 
 
437 aa  132  1.0000000000000001e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.152307 
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  28.8 
 
 
441 aa  130  4.0000000000000003e-29  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3270  extracellular solute-binding protein family 1  27.22 
 
 
435 aa  130  4.0000000000000003e-29  Dickeya dadantii Ech703  Bacteria  normal  0.543416  n/a   
 
 
-
 
NC_006348  BMA2744  glycerol-3-phosphate transporter periplasmic binding protein  27.4 
 
 
441 aa  125  1e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3726  glycerol-3-phosphate transporter periplasmic binding protein  27.4 
 
 
441 aa  125  1e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  0.268589  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3209  glycerol-3-phosphate transporter periplasmic binding protein  27.4 
 
 
441 aa  125  1e-27  Burkholderia mallei SAVP1  Bacteria  normal  0.0248662  n/a   
 
 
-
 
NC_008836  BMA10229_A1760  glycerol-3-phosphate transporter periplasmic binding protein  27.4 
 
 
441 aa  125  1e-27  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3697  glycerol-3-phosphate transporter periplasmic binding protein  27.4 
 
 
441 aa  125  1e-27  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2794  glycerol-3-phosphate transporter periplasmic binding protein  27.4 
 
 
441 aa  125  1e-27  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3021  glycerol-3-phosphate transporter periplasmic binding protein  27.17 
 
 
441 aa  124  3e-27  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2055  extracellular solute-binding protein  28.44 
 
 
436 aa  124  3e-27  Cupriavidus metallidurans CH34  Bacteria  normal  0.822621  normal 
 
 
-
 
NC_010551  BamMC406_0323  glycerol-3-phosphate transporter periplasmic binding protein  27.36 
 
 
444 aa  124  3e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.839712 
 
 
-
 
NC_013946  Mrub_0322  extracellular solute-binding protein family 1  28.16 
 
 
435 aa  124  3e-27  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_0117  glycerol-3-phosphate transporter periplasmic binding protein  25.61 
 
 
444 aa  124  4e-27  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3492  glycerol-3-phosphate transporter periplasmic binding protein  26.73 
 
 
444 aa  123  6e-27  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2712  glycerol-3-phosphate transporter periplasmic binding protein  27.01 
 
 
443 aa  123  8e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290307  n/a   
 
 
-
 
NC_008542  Bcen2424_0395  glycerol-3-phosphate transporter periplasmic binding protein  27.01 
 
 
443 aa  123  8e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  0.954301  n/a   
 
 
-
 
NC_010508  Bcenmc03_0374  glycerol-3-phosphate transporter periplasmic binding protein  27.01 
 
 
444 aa  123  8e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0314  glycerol-3-phosphate transporter periplasmic binding protein  27.12 
 
 
444 aa  122  9.999999999999999e-27  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0125  glycerol-3-phosphate transporter periplasmic binding protein  25.38 
 
 
444 aa  122  9.999999999999999e-27  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3755  glycerol-3-phosphate transporter periplasmic binding protein  27.17 
 
 
441 aa  122  9.999999999999999e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0224  extracellular solute-binding protein  27.95 
 
 
431 aa  121  1.9999999999999998e-26  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0298  glycerol-3-phosphate transporter periplasmic binding protein  26.89 
 
 
444 aa  121  1.9999999999999998e-26  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0656  extracellular solute-binding protein family 1  26.59 
 
 
431 aa  121  3e-26  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.31335 
 
 
-
 
NC_007963  Csal_2738  extracellular solute-binding protein  25.99 
 
 
438 aa  121  3e-26  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.345118  n/a   
 
 
-
 
NC_013171  Apre_0061  extracellular solute-binding protein family 1  26.97 
 
 
462 aa  120  6e-26  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0448  glycerol-3-phosphate transporter periplasmic binding protein  26.29 
 
 
441 aa  120  7e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3509  glycerol-3-phosphate transporter periplasmic binding protein  26.06 
 
 
441 aa  119  9.999999999999999e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  0.839022  normal  0.0272066 
 
 
-
 
NC_012917  PC1_0631  extracellular solute-binding protein family 1  26.74 
 
 
435 aa  119  1.9999999999999998e-25  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008783  BARBAKC583_0349  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  27.08 
 
 
441 aa  118  1.9999999999999998e-25  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3861  glycerol-3-phosphate transporter periplasmic binding protein  24.65 
 
 
439 aa  117  5e-25  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0845  extracellular solute-binding protein family 1  26.18 
 
 
435 aa  116  1.0000000000000001e-24  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4045  glycerol-3-phosphate transporter periplasmic binding protein  24.37 
 
 
439 aa  115  1.0000000000000001e-24  Dickeya zeae Ech1591  Bacteria  normal  0.661181  n/a   
 
 
-
 
NC_009616  Tmel_0753  extracellular solute-binding protein  27.08 
 
 
437 aa  115  1.0000000000000001e-24  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1696  extracellular solute-binding protein  27.93 
 
 
436 aa  115  2.0000000000000002e-24  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00506774  n/a   
 
 
-
 
NC_010622  Bphy_2709  glycerol-3-phosphate transporter periplasmic binding protein  26.43 
 
 
441 aa  115  2.0000000000000002e-24  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3686  extracellular solute-binding protein  27.36 
 
 
460 aa  114  4.0000000000000004e-24  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2845  extracellular solute-binding protein family 1  25.33 
 
 
439 aa  114  4.0000000000000004e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008043  TM1040_3216  extracellular solute-binding protein  26.78 
 
 
425 aa  114  5e-24  Ruegeria sp. TM1040  Bacteria  normal  normal  0.949389 
 
 
-
 
NC_012852  Rleg_6261  extracellular solute-binding protein family 1  25.18 
 
 
428 aa  112  1.0000000000000001e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.689417 
 
 
-
 
NC_009832  Spro_0234  glycerol-3-phosphate transporter periplasmic binding protein  26.95 
 
 
439 aa  112  1.0000000000000001e-23  Serratia proteamaculans 568  Bacteria  normal  normal  0.500336 
 
 
-
 
CP001509  ECD_03302  glycerol-3-phosphate transporter subunit  24.44 
 
 
438 aa  111  3e-23  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0262  extracellular solute-binding protein family 1  24.44 
 
 
438 aa  111  3e-23  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.49 
 
 
458 aa  111  3e-23  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03255  hypothetical protein  24.44 
 
 
438 aa  111  3e-23  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4767  glycerol-3-phosphate transporter periplasmic binding protein  24.44 
 
 
438 aa  111  3e-23  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.552805 
 
 
-
 
NC_010468  EcolC_0263  glycerol-3-phosphate transporter periplasmic binding protein  24.44 
 
 
438 aa  111  3e-23  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A3650  glycerol-3-phosphate transporter periplasmic binding protein  24.44 
 
 
438 aa  111  3e-23  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  24.3 
 
 
458 aa  110  4.0000000000000004e-23  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.8 
 
 
458 aa  110  4.0000000000000004e-23  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3870  glycerol-3-phosphate transporter periplasmic binding protein  24.72 
 
 
438 aa  110  4.0000000000000004e-23  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0714  ABC transporter substrate-binding protein  25.13 
 
 
429 aa  110  4.0000000000000004e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2052  extracellular solute-binding protein  26.76 
 
 
438 aa  110  5e-23  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.8 
 
 
458 aa  110  5e-23  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011004  Rpal_5274  extracellular solute-binding protein family 1  25.85 
 
 
442 aa  110  6e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  23.79 
 
 
458 aa  110  6e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3931  glycerol-3-phosphate transporter periplasmic binding protein  24.16 
 
 
438 aa  110  6e-23  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  23.8 
 
 
458 aa  110  7.000000000000001e-23  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.8 
 
 
458 aa  110  7.000000000000001e-23  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  23.8 
 
 
458 aa  110  7.000000000000001e-23  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0604  extracellular solute-binding protein  26.8 
 
 
433 aa  109  8.000000000000001e-23  Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  0.00010036 
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.8 
 
 
458 aa  110  8.000000000000001e-23  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1155  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  28.37 
 
 
434 aa  110  8.000000000000001e-23  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.23 
 
 
458 aa  108  1e-22  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_3732  glycerol-3-phosphate transporter periplasmic binding protein  24.16 
 
 
438 aa  109  1e-22  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3306  extracellular solute-binding protein  26.92 
 
 
431 aa  109  1e-22  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2659  extracellular solute-binding protein family 1  26.92 
 
 
431 aa  108  2e-22  Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00136924  n/a   
 
 
-
 
NC_009708  YpsIP31758_0256  glycerol-3-phosphate transporter periplasmic binding protein  24.45 
 
 
439 aa  108  2e-22  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3962  glycerol-3-phosphate transporter periplasmic binding protein  24.45 
 
 
439 aa  108  2e-22  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3655  glycerol-3-phosphate transporter periplasmic binding protein  24.45 
 
 
439 aa  108  3e-22  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5204  extracellular solute-binding protein family 1  25.58 
 
 
440 aa  107  5e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306263 
 
 
-
 
NC_007925  RPC_0097  extracellular solute-binding protein  25.84 
 
 
434 aa  106  7e-22  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C3869  glycerol-3-phosphate transporter periplasmic binding protein  24.72 
 
 
438 aa  106  9e-22  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A3826  glycerol-3-phosphate transporter periplasmic binding protein  24.72 
 
 
438 aa  106  9e-22  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3759  glycerol-3-phosphate transporter periplasmic binding protein  24.72 
 
 
438 aa  106  9e-22  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2075  extracellular solute-binding protein  28.22 
 
 
433 aa  105  1e-21  Jannaschia sp. CCS1  Bacteria  normal  0.114781  normal  0.235936 
 
 
-
 
NC_010682  Rpic_1092  extracellular solute-binding protein family 1  27.44 
 
 
438 aa  106  1e-21  Ralstonia pickettii 12J  Bacteria  normal  0.0503452  normal 
 
 
-
 
NC_011205  SeD_A3928  glycerol-3-phosphate transporter periplasmic binding protein  24.72 
 
 
438 aa  106  1e-21  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
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