More than 300 homologs were found in PanDaTox collection
for query gene HMPREF0424_1316 on replicon NC_013721
Organism: Gardnerella vaginalis 409-05



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013721  HMPREF0424_1316  extracellular solute-binding protein  100 
 
 
423 aa  863    Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  42.82 
 
 
407 aa  335  7e-91  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_014213  Mesil_3422  ABC-type sugar transport systems permease component  41.18 
 
 
410 aa  315  9.999999999999999e-85  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3226  Transcriptional regulator  41.18 
 
 
410 aa  315  9.999999999999999e-85  Meiothermus silvanus DSM 9946  Bacteria  normal  0.101031  normal 
 
 
-
 
NC_013739  Cwoe_4883  extracellular solute-binding protein family 1  29.82 
 
 
436 aa  169  1e-40  Conexibacter woesei DSM 14684  Bacteria  normal  0.504344  normal 
 
 
-
 
NC_013739  Cwoe_3957  extracellular solute-binding protein family 1  29.29 
 
 
432 aa  157  2e-37  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4289  extracellular solute-binding protein  30.77 
 
 
466 aa  157  4e-37  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1229  extracellular solute-binding protein  29.25 
 
 
461 aa  147  2.0000000000000003e-34  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0257979  normal  0.868479 
 
 
-
 
NC_011884  Cyan7425_3276  extracellular solute-binding protein family 1  27.78 
 
 
420 aa  146  6e-34  Cyanothece sp. PCC 7425  Bacteria  normal  0.147153  normal  0.336546 
 
 
-
 
NC_012669  Bcav_1680  extracellular solute-binding protein family 1  29.86 
 
 
430 aa  143  5e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.173253  normal 
 
 
-
 
NC_013739  Cwoe_5802  extracellular solute-binding protein family 1  26.98 
 
 
444 aa  137  5e-31  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0809589 
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  27.19 
 
 
445 aa  135  9.999999999999999e-31  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3538  Maltose-binding periplasmic protein/domains- like protein  26.68 
 
 
406 aa  134  3e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  0.385239  normal 
 
 
-
 
NC_013595  Sros_3842  extracellular solute-binding protein family 1  29.63 
 
 
429 aa  133  6.999999999999999e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0316121  normal  0.0422385 
 
 
-
 
NC_010003  Pmob_1492  extracellular solute-binding protein  27.25 
 
 
421 aa  133  6.999999999999999e-30  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_012854  Rleg_6528  extracellular solute-binding protein family 1  28.21 
 
 
415 aa  131  2.0000000000000002e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0147922 
 
 
-
 
NC_009620  Smed_4159  extracellular solute-binding protein  27.11 
 
 
421 aa  132  2.0000000000000002e-29  Sinorhizobium medicae WSM419  Bacteria  normal  0.119299  normal  0.873951 
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  28.41 
 
 
415 aa  130  3e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0930087 
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  27.19 
 
 
414 aa  130  4.0000000000000003e-29  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011371  Rleg2_6572  extracellular solute-binding protein family 1  30.54 
 
 
410 aa  130  5.0000000000000004e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00103217  normal  0.480926 
 
 
-
 
NC_007644  Moth_1484  extracellular solute-binding protein  26.74 
 
 
444 aa  130  6e-29  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.00000000000980441  normal 
 
 
-
 
NC_008243  Meso_4520  extracellular solute-binding protein  25.46 
 
 
415 aa  129  9.000000000000001e-29  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012852  Rleg_6156  extracellular solute-binding protein family 1  30.63 
 
 
410 aa  129  9.000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.889741  hitchhiker  0.000305646 
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.74 
 
 
458 aa  129  1.0000000000000001e-28  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3910  extracellular solute-binding protein family 1  27.81 
 
 
412 aa  128  2.0000000000000002e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.198843 
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  26.52 
 
 
458 aa  127  3e-28  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  26.52 
 
 
458 aa  127  3e-28  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  26.52 
 
 
458 aa  127  4.0000000000000003e-28  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.52 
 
 
458 aa  127  5e-28  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4916  extracellular solute-binding protein  29.53 
 
 
410 aa  127  5e-28  Sinorhizobium medicae WSM419  Bacteria  normal  0.06645  normal  0.512511 
 
 
-
 
NC_013521  Sked_03090  ABC-type sugar transport system, periplasmic component  28.77 
 
 
419 aa  126  6e-28  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.033461  normal 
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.3 
 
 
458 aa  125  1e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3622  extracellular solute-binding protein family 1  26.61 
 
 
412 aa  125  2e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1296  extracellular solute-binding protein family 1  27.91 
 
 
443 aa  125  2e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.190784  normal 
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.09 
 
 
458 aa  125  2e-27  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.09 
 
 
458 aa  124  3e-27  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3944  extracellular solute-binding protein  26.99 
 
 
464 aa  123  5e-27  Frankia sp. EAN1pec  Bacteria  normal  0.920276  normal  0.0416082 
 
 
-
 
NC_013131  Caci_4697  extracellular solute-binding protein family 1  26.88 
 
 
442 aa  123  8e-27  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00367387  normal 
 
 
-
 
NC_014212  Mesil_0955  extracellular solute-binding protein family 1  26.13 
 
 
437 aa  122  9e-27  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.152307 
 
 
-
 
NC_014212  Mesil_0475  extracellular solute-binding protein family 1  26.29 
 
 
397 aa  122  9e-27  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_4993  extracellular solute-binding protein family 1  28.06 
 
 
432 aa  122  9.999999999999999e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0450999  normal  0.012477 
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.09 
 
 
458 aa  122  9.999999999999999e-27  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2758  extracellular solute-binding protein family 1  25.36 
 
 
423 aa  122  9.999999999999999e-27  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.736779  normal 
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  27.12 
 
 
458 aa  121  1.9999999999999998e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2294  extracellular solute-binding protein family 1  27.02 
 
 
448 aa  122  1.9999999999999998e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3983  extracellular solute-binding protein family 1  25.46 
 
 
456 aa  121  3e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_2834  extracellular solute-binding protein  27.05 
 
 
459 aa  120  4.9999999999999996e-26  Frankia sp. CcI3  Bacteria  normal  0.873121  normal 
 
 
-
 
NC_013947  Snas_0203  extracellular solute-binding protein family 1  27.78 
 
 
441 aa  120  6e-26  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.346278  normal  0.123927 
 
 
-
 
NC_013131  Caci_2611  extracellular solute-binding protein family 1  27.21 
 
 
453 aa  119  7e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.058641  normal 
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  25.49 
 
 
424 aa  119  9.999999999999999e-26  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_009667  Oant_2485  extracellular solute-binding protein  26.68 
 
 
415 aa  117  3e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00421769  n/a   
 
 
-
 
NC_013595  Sros_3339  Maltose-binding periplasmic protein/domains- like protein  30.34 
 
 
431 aa  117  3e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.202326 
 
 
-
 
NC_013946  Mrub_0791  extracellular solute-binding protein family 1  24.06 
 
 
399 aa  117  3.9999999999999997e-25  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.418273 
 
 
-
 
NC_013159  Svir_16660  ABC-type sugar transport system, periplasmic component  26.6 
 
 
406 aa  117  6e-25  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.613471  normal 
 
 
-
 
NC_010483  TRQ2_1696  extracellular solute-binding protein  25.83 
 
 
436 aa  114  3e-24  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00506774  n/a   
 
 
-
 
NC_011071  Smal_2683  extracellular solute-binding protein family 1  23.4 
 
 
446 aa  114  3e-24  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.50155  normal 
 
 
-
 
NC_014165  Tbis_1886  extracellular solute-binding protein family 1  26.82 
 
 
435 aa  114  4.0000000000000004e-24  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.23125 
 
 
-
 
NC_012669  Bcav_3988  extracellular solute-binding protein family 1  24.13 
 
 
422 aa  114  4.0000000000000004e-24  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3465  extracellular solute-binding protein  27.62 
 
 
411 aa  113  7.000000000000001e-24  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2832  extracellular solute-binding protein family 1  25.68 
 
 
417 aa  112  1.0000000000000001e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  0.617934  n/a   
 
 
-
 
NC_008541  Arth_3146  extracellular solute-binding protein  24.5 
 
 
424 aa  111  2.0000000000000002e-23  Arthrobacter sp. FB24  Bacteria  normal  0.0629231  n/a   
 
 
-
 
NC_011899  Hore_15560  extracellular solute-binding protein family 1  27.84 
 
 
418 aa  111  2.0000000000000002e-23  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1773  extracellular solute-binding protein family 1  28.4 
 
 
421 aa  112  2.0000000000000002e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0165592 
 
 
-
 
NC_009636  Smed_2315  extracellular solute-binding protein  31.14 
 
 
455 aa  112  2.0000000000000002e-23  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.271919 
 
 
-
 
NC_008010  Dgeo_2726  extracellular solute-binding protein  26.14 
 
 
437 aa  110  3e-23  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.290956  n/a   
 
 
-
 
NC_008048  Sala_1023  extracellular solute-binding protein  25.13 
 
 
422 aa  110  4.0000000000000004e-23  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.705733  normal 
 
 
-
 
NC_011988  Avi_5398  ABC transporter substrate binding protein (sugar)  28.23 
 
 
403 aa  110  4.0000000000000004e-23  Agrobacterium vitis S4  Bacteria  normal  0.14652  n/a   
 
 
-
 
NC_013411  GYMC61_2845  extracellular solute-binding protein family 1  26.52 
 
 
439 aa  109  9.000000000000001e-23  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013947  Snas_3121  extracellular solute-binding protein family 1  29.44 
 
 
445 aa  109  1e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00116931 
 
 
-
 
NC_009380  Strop_0803  extracellular solute-binding protein  27.03 
 
 
433 aa  109  1e-22  Salinispora tropica CNB-440  Bacteria  normal  0.437157  normal 
 
 
-
 
NC_009636  Smed_2146  extracellular solute-binding protein  22.67 
 
 
414 aa  108  1e-22  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0904  ABC transporter, periplasmic substrate-binding protein, putative  24.39 
 
 
439 aa  108  2e-22  Clostridium perfringens SM101  Bacteria  decreased coverage  0.00221898  n/a   
 
 
-
 
NC_009668  Oant_3750  extracellular solute-binding protein  27.38 
 
 
433 aa  108  2e-22  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.316129  n/a   
 
 
-
 
NC_013159  Svir_11620  ABC-type sugar transport system, periplasmic component  26.65 
 
 
426 aa  107  4e-22  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  27.73 
 
 
422 aa  107  4e-22  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013946  Mrub_0045  extracellular solute-binding protein family 1  25 
 
 
414 aa  106  7e-22  Meiothermus ruber DSM 1279  Bacteria  normal  0.713374  normal 
 
 
-
 
NC_010816  BLD_0923  MalE-type ABC sugar transport system periplasmic component  28.01 
 
 
450 aa  106  8e-22  Bifidobacterium longum DJO10A  Bacteria  normal  0.293658  n/a   
 
 
-
 
NC_010003  Pmob_0954  extracellular solute-binding protein  22.98 
 
 
399 aa  106  9e-22  Petrotoga mobilis SJ95  Bacteria  normal  0.0450213  n/a   
 
 
-
 
NC_007604  Synpcc7942_2417  transcriptional regulator, ABC transporter  27.49 
 
 
421 aa  105  1e-21  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.0335393 
 
 
-
 
NC_009972  Haur_1150  extracellular solute-binding protein  28.57 
 
 
441 aa  106  1e-21  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.344094  n/a   
 
 
-
 
NC_010320  Teth514_0397  extracellular solute-binding protein  26.41 
 
 
428 aa  105  1e-21  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0514  extracellular solute-binding protein family 1  25.24 
 
 
426 aa  105  1e-21  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0753  extracellular solute-binding protein  24.88 
 
 
437 aa  105  1e-21  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0721  extracellular solute-binding protein  24.31 
 
 
437 aa  105  2e-21  Petrotoga mobilis SJ95  Bacteria  normal  0.540981  n/a   
 
 
-
 
NC_013526  Tter_2209  extracellular solute-binding protein family 1  24.88 
 
 
487 aa  105  2e-21  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2049  extracellular solute-binding protein family 1  25 
 
 
438 aa  105  2e-21  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.266449  n/a   
 
 
-
 
NC_013202  Hmuk_0944  extracellular solute-binding protein family 1  24.05 
 
 
433 aa  104  3e-21  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.322748 
 
 
-
 
NC_010320  Teth514_1099  extracellular solute-binding protein  26.12 
 
 
457 aa  104  3e-21  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0385  extracellular solute-binding protein family 1  27.11 
 
 
410 aa  104  3e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0390662 
 
 
-
 
NC_004311  BRA1180  sugar ABC transporter, periplasmic sugar-binding protein, putative  26.27 
 
 
421 aa  103  4e-21  Brucella suis 1330  Bacteria  normal  0.409061  n/a   
 
 
-
 
NC_010320  Teth514_0753  extracellular solute-binding protein  23.53 
 
 
429 aa  103  4e-21  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00037903  n/a   
 
 
-
 
NC_004311  BRA0748  sugar ABC transporter, periplasmic sugar-binding protein, putative  25.37 
 
 
411 aa  103  5e-21  Brucella suis 1330  Bacteria  normal  0.537127  n/a   
 
 
-
 
NC_004311  BRA0655  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  26.91 
 
 
433 aa  103  8e-21  Brucella suis 1330  Bacteria  normal  0.454035  n/a   
 
 
-
 
NC_012669  Bcav_3572  extracellular solute-binding protein family 1  25 
 
 
427 aa  103  8e-21  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.405751  normal 
 
 
-
 
NC_011661  Dtur_1732  extracellular solute-binding protein family 1  26.52 
 
 
415 aa  102  1e-20  Dictyoglomus turgidum DSM 6724  Bacteria  unclonable  0.000000000368486  n/a   
 
 
-
 
NC_007413  Ava_3685  extracellular solute-binding protein  24.43 
 
 
432 aa  102  1e-20  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3895  extracellular solute-binding protein  25.12 
 
 
411 aa  102  1e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3216  extracellular solute-binding protein  25.63 
 
 
425 aa  102  1e-20  Ruegeria sp. TM1040  Bacteria  normal  normal  0.949389 
 
 
-
 
NC_013595  Sros_4988  extracellular solute-binding protein  26.69 
 
 
414 aa  102  1e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  0.601947  normal 
 
 
-
 
NC_014211  Ndas_4930  extracellular solute-binding protein family 1  26.77 
 
 
419 aa  102  1e-20  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.265943  normal 
 
 
-
 
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