More than 300 homologs were found in PanDaTox collection
for query gene Bcav_1508 on replicon NC_012669
Organism: Beutenbergia cavernae DSM 12333



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012669  Bcav_1508  extracellular solute-binding protein family 1  100 
 
 
451 aa  905    Beutenbergia cavernae DSM 12333  Bacteria  normal  0.55774  normal 
 
 
-
 
NC_013526  Tter_2294  extracellular solute-binding protein family 1  39.82 
 
 
448 aa  322  6e-87  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1527  extracellular solute-binding protein family 1  43.1 
 
 
465 aa  314  1.9999999999999998e-84  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.922727  normal  0.377984 
 
 
-
 
NC_011831  Cagg_2195  extracellular solute-binding protein family 1  37.99 
 
 
450 aa  296  5e-79  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_30840  ABC-type sugar transport system, periplasmic component  39.61 
 
 
463 aa  278  2e-73  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0113  extracellular solute-binding protein  37.76 
 
 
455 aa  266  5e-70  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.270734  normal 
 
 
-
 
NC_009523  RoseRS_4566  extracellular solute-binding protein  35.52 
 
 
453 aa  262  8e-69  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_18880  carbohydrate-binding protein  33.48 
 
 
460 aa  222  9.999999999999999e-57  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.141989  normal  0.173455 
 
 
-
 
NC_009565  TBFG_12848  sn-glycerol-3-phosphate-binding lipoprotein ugpB  34.72 
 
 
436 aa  218  2e-55  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000000142723  normal 
 
 
-
 
NC_013174  Jden_2244  extracellular solute-binding protein family 1  34.19 
 
 
455 aa  215  1.9999999999999998e-54  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.846858 
 
 
-
 
NC_009664  Krad_0297  extracellular solute-binding protein family 1  33.33 
 
 
453 aa  213  7.999999999999999e-54  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0248346 
 
 
-
 
NC_014158  Tpau_3527  extracellular solute-binding protein family 1  34.25 
 
 
436 aa  211  2e-53  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2663  extracellular solute-binding protein family 1  35.16 
 
 
468 aa  209  6e-53  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_0894  extracellular solute-binding protein family 1  34.69 
 
 
470 aa  208  1e-52  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.444762  normal  0.144357 
 
 
-
 
NC_013172  Bfae_29870  carbohydrate-binding protein  32.64 
 
 
448 aa  205  1e-51  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_2948  extracellular solute-binding protein  34.34 
 
 
448 aa  201  1.9999999999999998e-50  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0322  extracellular solute-binding protein family 1  30.21 
 
 
435 aa  144  4e-33  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  27.99 
 
 
458 aa  137  6.0000000000000005e-31  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  27.99 
 
 
458 aa  136  7.000000000000001e-31  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  27.99 
 
 
458 aa  136  7.000000000000001e-31  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  27.99 
 
 
458 aa  136  8e-31  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  27.99 
 
 
458 aa  136  8e-31  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  27.99 
 
 
458 aa  136  9e-31  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3270  extracellular solute-binding protein family 1  27.36 
 
 
435 aa  136  9e-31  Dickeya dadantii Ech703  Bacteria  normal  0.543416  n/a   
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  27.43 
 
 
458 aa  134  1.9999999999999998e-30  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  27.74 
 
 
458 aa  134  3e-30  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  27.74 
 
 
458 aa  134  5e-30  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6664  extracellular solute-binding protein  28.53 
 
 
452 aa  133  6e-30  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0689323 
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  27.48 
 
 
458 aa  131  2.0000000000000002e-29  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3386  extracellular solute-binding protein family 1  26.87 
 
 
440 aa  131  3e-29  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  26.79 
 
 
445 aa  127  4.0000000000000003e-28  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  28.07 
 
 
441 aa  127  5e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0289  extracellular solute-binding protein  27.6 
 
 
437 aa  123  5e-27  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000019091  n/a   
 
 
-
 
NC_010002  Daci_5306  extracellular solute-binding protein  27.7 
 
 
431 aa  123  7e-27  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.457023 
 
 
-
 
NC_011769  DvMF_0656  extracellular solute-binding protein family 1  27.09 
 
 
431 aa  121  1.9999999999999998e-26  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.31335 
 
 
-
 
NC_010003  Pmob_0721  extracellular solute-binding protein  27.81 
 
 
437 aa  122  1.9999999999999998e-26  Petrotoga mobilis SJ95  Bacteria  normal  0.540981  n/a   
 
 
-
 
NC_008043  TM1040_3216  extracellular solute-binding protein  26.72 
 
 
425 aa  120  3.9999999999999996e-26  Ruegeria sp. TM1040  Bacteria  normal  normal  0.949389 
 
 
-
 
NC_010483  TRQ2_1696  extracellular solute-binding protein  27.06 
 
 
436 aa  120  4.9999999999999996e-26  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00506774  n/a   
 
 
-
 
NC_008782  Ajs_3306  extracellular solute-binding protein  26.25 
 
 
431 aa  120  6e-26  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1484  extracellular solute-binding protein  27.69 
 
 
444 aa  119  9.999999999999999e-26  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.00000000000980441  normal 
 
 
-
 
NC_012917  PC1_0125  glycerol-3-phosphate transporter periplasmic binding protein  26.77 
 
 
444 aa  119  9.999999999999999e-26  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2659  extracellular solute-binding protein family 1  25.96 
 
 
431 aa  118  1.9999999999999998e-25  Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00136924  n/a   
 
 
-
 
NC_013411  GYMC61_2845  extracellular solute-binding protein family 1  26.13 
 
 
439 aa  117  3e-25  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013946  Mrub_2730  extracellular solute-binding protein family 1  27.97 
 
 
399 aa  115  1.0000000000000001e-24  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0631  extracellular solute-binding protein family 1  25.82 
 
 
435 aa  115  2.0000000000000002e-24  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0061  extracellular solute-binding protein family 1  26.94 
 
 
462 aa  115  2.0000000000000002e-24  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0476  extracellular solute-binding protein family 1  27.58 
 
 
401 aa  114  3e-24  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C3869  glycerol-3-phosphate transporter periplasmic binding protein  26.55 
 
 
438 aa  114  4.0000000000000004e-24  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3759  glycerol-3-phosphate transporter periplasmic binding protein  26.55 
 
 
438 aa  114  4.0000000000000004e-24  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A3826  glycerol-3-phosphate transporter periplasmic binding protein  26.55 
 
 
438 aa  114  4.0000000000000004e-24  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2738  extracellular solute-binding protein  29.04 
 
 
438 aa  114  5e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.345118  n/a   
 
 
-
 
NC_009485  BBta_0714  ABC transporter substrate-binding protein  27.61 
 
 
429 aa  113  5e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2846  extracellular solute-binding protein family 1  30.84 
 
 
435 aa  113  6e-24  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.687638 
 
 
-
 
NC_011205  SeD_A3928  glycerol-3-phosphate transporter periplasmic binding protein  26.55 
 
 
438 aa  113  6e-24  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2173  extracellular solute-binding protein family 1  28.11 
 
 
445 aa  113  7.000000000000001e-24  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.00822083  n/a   
 
 
-
 
NC_013421  Pecwa_0117  glycerol-3-phosphate transporter periplasmic binding protein  25.79 
 
 
444 aa  112  1.0000000000000001e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0224  extracellular solute-binding protein  26.72 
 
 
431 aa  112  1.0000000000000001e-23  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_0845  extracellular solute-binding protein family 1  25.27 
 
 
435 aa  112  2.0000000000000002e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0955  extracellular solute-binding protein family 1  26.12 
 
 
437 aa  111  2.0000000000000002e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.152307 
 
 
-
 
NC_012880  Dd703_3861  glycerol-3-phosphate transporter periplasmic binding protein  26.37 
 
 
439 aa  111  2.0000000000000002e-23  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4045  glycerol-3-phosphate transporter periplasmic binding protein  26.63 
 
 
439 aa  111  2.0000000000000002e-23  Dickeya zeae Ech1591  Bacteria  normal  0.661181  n/a   
 
 
-
 
NC_012917  PC1_1881  extracellular solute-binding protein family 1  28.69 
 
 
445 aa  111  2.0000000000000002e-23  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.000340671  n/a   
 
 
-
 
NC_013205  Aaci_2049  extracellular solute-binding protein family 1  26.65 
 
 
438 aa  111  3e-23  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.266449  n/a   
 
 
-
 
NC_008783  BARBAKC583_0349  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  26.65 
 
 
441 aa  110  5e-23  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A3748  glycerol-3-phosphate transporter periplasmic binding protein  26.32 
 
 
438 aa  110  5e-23  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_0234  glycerol-3-phosphate transporter periplasmic binding protein  26.39 
 
 
439 aa  109  1e-22  Serratia proteamaculans 568  Bacteria  normal  normal  0.500336 
 
 
-
 
NC_009486  Tpet_0322  extracellular solute-binding protein  27.37 
 
 
419 aa  109  1e-22  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  25.06 
 
 
414 aa  108  2e-22  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1068  extracellular solute-binding protein  26.37 
 
 
429 aa  107  3e-22  Petrotoga mobilis SJ95  Bacteria  normal  0.501776  n/a   
 
 
-
 
NC_010483  TRQ2_0340  extracellular solute-binding protein  25.12 
 
 
419 aa  107  4e-22  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3856  glycerol-3-phosphate transporter periplasmic binding protein  26.32 
 
 
440 aa  107  5e-22  Enterobacter sp. 638  Bacteria  normal  normal  0.64819 
 
 
-
 
NC_010498  EcSMS35_3732  glycerol-3-phosphate transporter periplasmic binding protein  25.7 
 
 
438 aa  106  1e-21  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_0256  glycerol-3-phosphate transporter periplasmic binding protein  26.87 
 
 
439 aa  105  2e-21  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3962  glycerol-3-phosphate transporter periplasmic binding protein  26.87 
 
 
439 aa  105  2e-21  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0753  extracellular solute-binding protein  26.54 
 
 
437 aa  105  2e-21  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03302  glycerol-3-phosphate transporter subunit  25.7 
 
 
438 aa  104  3e-21  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0262  extracellular solute-binding protein family 1  25.7 
 
 
438 aa  104  3e-21  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3650  glycerol-3-phosphate transporter periplasmic binding protein  25.7 
 
 
438 aa  104  3e-21  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4664  extracellular solute-binding protein  27.79 
 
 
448 aa  104  3e-21  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.593429 
 
 
-
 
NC_007925  RPC_0097  extracellular solute-binding protein  26.76 
 
 
434 aa  104  3e-21  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_0263  glycerol-3-phosphate transporter periplasmic binding protein  25.7 
 
 
438 aa  104  3e-21  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A3655  glycerol-3-phosphate transporter periplasmic binding protein  26.87 
 
 
439 aa  104  3e-21  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03255  hypothetical protein  25.7 
 
 
438 aa  104  3e-21  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4767  glycerol-3-phosphate transporter periplasmic binding protein  25.7 
 
 
438 aa  104  3e-21  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.552805 
 
 
-
 
NC_009718  Fnod_0188  extracellular solute-binding protein  27.9 
 
 
420 aa  104  3e-21  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3870  glycerol-3-phosphate transporter periplasmic binding protein  25.83 
 
 
438 aa  104  4e-21  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3931  glycerol-3-phosphate transporter periplasmic binding protein  25.42 
 
 
438 aa  103  5e-21  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2052  extracellular solute-binding protein  27.91 
 
 
438 aa  103  6e-21  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_3686  extracellular solute-binding protein  26.7 
 
 
460 aa  103  6e-21  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2093  glycerol-3-phosphate ABC transporter extracellular solute-binding family 1 protein  27.05 
 
 
435 aa  103  7e-21  Psychromonas ingrahamii 37  Bacteria  normal  0.107678  normal  0.487826 
 
 
-
 
NC_013946  Mrub_0791  extracellular solute-binding protein family 1  25.82 
 
 
399 aa  102  2e-20  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.418273 
 
 
-
 
NC_009720  Xaut_4449  extracellular solute-binding protein  27.22 
 
 
446 aa  101  3e-20  Xanthobacter autotrophicus Py2  Bacteria  decreased coverage  0.00843107  normal  0.115126 
 
 
-
 
NC_009616  Tmel_0270  extracellular solute-binding protein  26.11 
 
 
419 aa  101  3e-20  Thermosipho melanesiensis BI429  Bacteria  normal  0.562219  n/a   
 
 
-
 
NC_012852  Rleg_6261  extracellular solute-binding protein family 1  26.51 
 
 
428 aa  100  4e-20  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.689417 
 
 
-
 
NC_010682  Rpic_1092  extracellular solute-binding protein family 1  27.22 
 
 
438 aa  99.8  8e-20  Ralstonia pickettii 12J  Bacteria  normal  0.0503452  normal 
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  25.34 
 
 
441 aa  99.4  1e-19  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0255  extracellular solute-binding protein family 1  27.3 
 
 
439 aa  98.6  2e-19  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1185  extracellular solute-binding protein family 1  26.9 
 
 
438 aa  98.6  2e-19  Ralstonia pickettii 12D  Bacteria  normal  0.276437  normal 
 
 
-
 
NC_011884  Cyan7425_3276  extracellular solute-binding protein family 1  25.28 
 
 
420 aa  97.8  4e-19  Cyanothece sp. PCC 7425  Bacteria  normal  0.147153  normal  0.336546 
 
 
-
 
NC_009784  VIBHAR_06396  ABC-type sugar transport system periplasmic protein  27.2 
 
 
435 aa  97.8  4e-19  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>