Gene Ava_1229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1229 
Symbol 
ID3683269 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1514019 
End bp1515404 
Gene Length1386 bp 
Protein Length461 aa 
Translation table11 
GC content42% 
IMG OID637716567 
Productextracellular solute-binding protein 
Protein accessionYP_321748 
Protein GI75907452 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0257979 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.868479 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTTA AAAAATTGAT TAATCTGTTT TATCAAAACT GTGCGCGGTT TTTTTTCGCC 
TCTGATGATT CTAGGGTAAA AAGAAAAAAT TGGCGATTTT ACCGATATCG TTGGCTATCG
CTGTTTCTAG TAGGAATATT GGTTACTAGT GGATGTCAGG TAATCCAAAA TGGCATGAAG
GCAGATAAAG TCATTCATTT AACTTTATGG CATGGGGTGA ATCCGCCACC TAATCGGGAT
GTCTTTCAAA AGCTGGTAGA TAAGTTTAAC CAAAGCCATA CAGATATTCA GGTAGATGCG
ATTTACGCTG GACAACAAGA CCAACAAATG CCGAAGATTT TGGCAGCTGT CGTAGGTAAT
GCGTCCCCGG ATATTTTGTG GTACAACCCA GCAACTACAG GGCAACTAGT AGAACTAAAT
GCCTTGGTTC CTTTGGACGA AATGTTGTCA AGTTCACTAA TTAAAGATGA AATTGACCCC
AGCTTATACC CGGCTGTGGA ATACCAGGGT AAAACTTGGG CAGTACCTTT TGCTACAAAT
AATGTTGGCG TTTTTTATCG TCCCAGTTTG TTTAAGGCGG CGGGAATTAC ACAATTACCT
AAGACTTGGG AAGAGTTTCG GGAAGTTGCC AAAAAATTGA CCCGTGATAC CGATGGTGAT
GGAAGAATTG ATCAACATGG GATGGTACTA CCTTTAGGCA AAGGTGAGTT TACCGTTTTT
ACTTGGCTAC CATTTATGTG GAGTGGAGGC GGCGAGTTGG TAAGCAAAGA TTCACAGAAT
GCGGCTGGTG TCACTTTAGA AAATAATGCT GGGGCGATCG CTGCTTTACA ATTGTGGCGT
GATTTAATAA CAGATGGTTC GGCTGTGTTA TCAGGCCCAG AAAGAGGTTA TGAAACCAAC
GATTTGCTAG CTGGTAAAGT AGCGATGCAA TTAACCGGGC CTTGGACTTT AGGGGAGTTT
CAAACTAGTG GGGTTGATTT TGATGTATTC CCTATTCCGG TGGGGCAAAG ACCTGCTACT
GTAATTGGCG GCGAAAATCT TTATATTTTT AAATCTAAAC CGGAAAGAGA AAAGGCAGCT
TTTAAATTTC TTGAATATGC GGCTGGTGAG GAATTTCAAA CAGAGTTAGC ATTGGGAACC
GGTTATTTAC CAATCAATTT AAAATCCCGC GAAAGTGCAA AATATCAGGC ATTTGTGAAA
AAAGTACCCC AAGCAAAGGT ATTTTTAGAA CAGGCTAAAT ATGCGCGATC GCGTCCTACT
TTCCCCGGTT ATAATCGAAT CTCTGATAGT GTGGGTCGGG CAGTGGAAAC TGTATTGATG
GGTAAAAGTT CCCCAGCAGA TGCCCTAAAA GCTAGTCAGC AGCGCTTAGA TTTGATTTTC
AAATAA
 
Protein sequence
MKVKKLINLF YQNCARFFFA SDDSRVKRKN WRFYRYRWLS LFLVGILVTS GCQVIQNGMK 
ADKVIHLTLW HGVNPPPNRD VFQKLVDKFN QSHTDIQVDA IYAGQQDQQM PKILAAVVGN
ASPDILWYNP ATTGQLVELN ALVPLDEMLS SSLIKDEIDP SLYPAVEYQG KTWAVPFATN
NVGVFYRPSL FKAAGITQLP KTWEEFREVA KKLTRDTDGD GRIDQHGMVL PLGKGEFTVF
TWLPFMWSGG GELVSKDSQN AAGVTLENNA GAIAALQLWR DLITDGSAVL SGPERGYETN
DLLAGKVAMQ LTGPWTLGEF QTSGVDFDVF PIPVGQRPAT VIGGENLYIF KSKPEREKAA
FKFLEYAAGE EFQTELALGT GYLPINLKSR ESAKYQAFVK KVPQAKVFLE QAKYARSRPT
FPGYNRISDS VGRAVETVLM GKSSPADALK ASQQRLDLIF K