| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4688 |
|---|
| Symbol | |
|---|
| ID | 8336042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 5342253 |
|---|
| End bp | 5343509 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644957788 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_003115390 |
|---|
| Protein GI | 256393826 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.733472 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCATAC GCACAGTGGT GGCGGCGTCG GCGGTTCTCG CGCTGGCCAC TTCGACGGCC
GCTTGTTCGA GCAGCGCGAG TTCCTCGGCG AGCGCCGGCA AGGTTTCCCT CAGCTACGGG
GTCTGGGACG CGACGCAGGT CCCGGCCATG CAGAAGATCA TCGCAGCCTT CGAGGCACAG
AACCCGACCA TCACGGTCAC CATCCAGCAG ACGCCGTGGG CGGACTACTG GACCAAGCTC
CAGGCGGCCG CCTCCGGCGG TTCGGCGCCC GACGTCTTCT GGATGAACGG CCCGAACTTC
CAGCTCTACG CCGCCAACCA CGTCCTGCGG CCGCTGACCG ACCTGCACCC GGACACCTCG
GTCTACCCCC CGGCGCTGGC GCAGCTCTAC CAGTACAAGG GCGTGCAGTA CGGGCTGCCG
AAGGACTTCG ACACCGTGGG GCTCTGGTAC AACAAGGCCA TCTTCGACGC CGCGGGCGTC
GCCTACCCCA CCACCGCCTG GACCTGGGCT GATTTCCAAG CGGCGGCGAA AAAACTCACC
GACCCCGCCA AGGGCGTCTA CGGTGTCGGC GCCAACCTGG AAGGCCAGGA GAACTACTAC
GACACGATCT ACCAGGCCGG CGGCTACGTC ATCTCCCCCG ACGGCAAGAA GTCCGGATAC
GCCGATCCGG CCGGTATCGC CGGGCTGAAG TTCTGGACCG ATCTGGTCGC GGCCAAGGAG
TCGCCGAGCC TGAAGCAGAT GACGGACACC GCGCCGCTGA ACCTGTTCGA GTCCGGCAAG
CTCGCCATGT ACTGGGGCGG GTCGTGGGAC GCGAAGGCGT TCGCCGCGAA CGACTCCACC
AAGACCGCCG TCGACGTGAC CGCGCTGCCA GCCGGGGTGA AGAAGGCGAC GGTCATCCAC
GGCCTGGCCA ACGTCGTCTT CACGCACACC TCGCACCCGG CGCAGGCGGA GAAGTTCGCC
GCGTTCCTCG GCTCGCAGGC GGCGGCGCAG ATCGAGGCGG ACACCGGGAC CGTGATCCCG
GCGTACAACG GCACACAGCA GAGCTGGGTC AAGGCATACC CGCAGTACCA CCTCCAGTCC
TTCTTGGATC AGCTTCCTGA CGCGGTCCCG TACCCGATCT CCAAGGACAC CGCGGCCTGG
AACACCCTGG AGACGAACGT CCTGACCAAG GCCTGGGACG GCAGCGAACC GATCGACAAG
GCCGCCGGCG ACCTCGCCAC GCAGATGAAC GCGGCGCTGG CCAAGGAGGG TCCGTGA
|
|---|
| Protein sequence | MGIRTVVAAS AVLALATSTA ACSSSASSSA SAGKVSLSYG VWDATQVPAM QKIIAAFEAQ
NPTITVTIQQ TPWADYWTKL QAAASGGSAP DVFWMNGPNF QLYAANHVLR PLTDLHPDTS
VYPPALAQLY QYKGVQYGLP KDFDTVGLWY NKAIFDAAGV AYPTTAWTWA DFQAAAKKLT
DPAKGVYGVG ANLEGQENYY DTIYQAGGYV ISPDGKKSGY ADPAGIAGLK FWTDLVAAKE
SPSLKQMTDT APLNLFESGK LAMYWGGSWD AKAFAANDST KTAVDVTALP AGVKKATVIH
GLANVVFTHT SHPAQAEKFA AFLGSQAAAQ IEADTGTVIP AYNGTQQSWV KAYPQYHLQS
FLDQLPDAVP YPISKDTAAW NTLETNVLTK AWDGSEPIDK AAGDLATQMN AALAKEGP
|
|---|
| |