Gene RoseRS_4566 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_4566 
Symbol 
ID5211552 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp5723744 
End bp5725105 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content62% 
IMG OID640598145 
Productextracellular solute-binding protein 
Protein accessionYP_001278847 
Protein GI148658642 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACGA TCAACCGACG ACAATTCCTG CGCGGTGTGG CGGCTGGCGC CGGTGCGCTG 
ACGCTGGCAG CCTGCGGCGG CGGCACGACG ACCGAACCCA CAGCGGCGCC AGCGCAACCC
ACAGCGGCGC CACCCACTGC AATGCCCCAG GGCGCAATGG GTTCAACGGT CGAAATCACC
TACTGGGGGT CATTCAGCGG CGTACTCGGT GAGGCGGAGC AGGCGACTGT CGAAGCCTTC
AACAGCATGC AGCAGGATGT CAAAGTCAAC TACCAGTTCC AGGGCAACTA CGAAGAGACG
GCGCAGAAGT TGACCGCTGC GGTTCAGGCG CGCCAGACGC CGGACGTCAG CCTGCTCTCG
GATGTCTGGT GGTTCTCGTT CTATATCAAC GGTCAGTTGC AGCCGCTCGA CGATCTGATG
GCAGCCGAAG GCGTCAAGCG CGAAGCCTAC GTGGATGTGC TGCTCAACGA AGGCATCCGC
AAGAATACCG TCTACTGGAT CCCGTTCGCA CGCTCGACGC CGCTGTTCTA CTACAACAAG
GATGCCTGGG CGGAGGCAGG GCTTGAGGAT CGTGCGCCGA AGACCTGGGA CGAATTCATG
GAGTGGGCGC CGAAACTCAA CAAAGAGGGA CGCGCCGCAT TTGCCCACCC CGGCGCTGCA
AGTTACATCG CCTGGCTCTT CCAGGGTGTG ATCTGGCAGT TTGGCGGACG CTACAGCGAC
CCCGACTTCA CCATCCGCAT CCACGAAGAG GGCGGCATCA AAGCTGGCAA CTTCTACCGT
GACACGACCC AGACCTACAA GTGGGCAACC ACGCCGAAGG ACGTGACCCA GGACTTCGTC
ACCGGTCAGT CAGCCAGCGC GATGTTGAGC ACTGCTGCGC TGGCAGGCGT CGAGAAGAAT
GCGCAGTTCC CGGTCGGCAC CGGCTTTCTG CCGGAAGGAC CGGCTGGCTT CGGGTGCTGC
ACCGGCGGCG CGGGTATGGC CATCCTGGCG GGCCTGCCTG CTGAGAAGCA GCAGGCGGCG
ATGAAGTGGA TCGCCTTTGC CACCGGTGAG GAGTGGACAA TTAACTGGGC GCAGCGCACA
GGATATATGC CGGTGCGCAA GGCAGCGGTG CAGTCGGAGA GTATGCAGAA ATATTTTACC
GAGCGCCCCA ACTTCCGCAC GGCGGTCGAA CAGTTGCCGA AGACCCGTCC GCAGGACTCG
GCGCGCGTCT ATGTACGCGG CGGCGATCAG ATCATCGGCA AGGGGTTGGA GCGCATTACG
GTTGCGGGCG AAGACCCGGC GAAGGTCTGG ATGGACGTCA AGAAAGAACT CGAAGAGGCT
GCCGCGCCAA CCGTCGAACT GTTGAAGACG GTTGAGGGTT AG
 
Protein sequence
MATINRRQFL RGVAAGAGAL TLAACGGGTT TEPTAAPAQP TAAPPTAMPQ GAMGSTVEIT 
YWGSFSGVLG EAEQATVEAF NSMQQDVKVN YQFQGNYEET AQKLTAAVQA RQTPDVSLLS
DVWWFSFYIN GQLQPLDDLM AAEGVKREAY VDVLLNEGIR KNTVYWIPFA RSTPLFYYNK
DAWAEAGLED RAPKTWDEFM EWAPKLNKEG RAAFAHPGAA SYIAWLFQGV IWQFGGRYSD
PDFTIRIHEE GGIKAGNFYR DTTQTYKWAT TPKDVTQDFV TGQSASAMLS TAALAGVEKN
AQFPVGTGFL PEGPAGFGCC TGGAGMAILA GLPAEKQQAA MKWIAFATGE EWTINWAQRT
GYMPVRKAAV QSESMQKYFT ERPNFRTAVE QLPKTRPQDS ARVYVRGGDQ IIGKGLERIT
VAGEDPAKVW MDVKKELEEA AAPTVELLKT VEG