More than 300 homologs were found in PanDaTox collection
for query gene Daci_5306 on replicon NC_010002
Organism: Delftia acidovorans SPH-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011992  Dtpsy_2659  extracellular solute-binding protein family 1  86.54 
 
 
431 aa  771    Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00136924  n/a   
 
 
-
 
NC_010002  Daci_5306  extracellular solute-binding protein  100 
 
 
431 aa  883    Delftia acidovorans SPH-1  Bacteria  normal  normal  0.457023 
 
 
-
 
NC_008782  Ajs_3306  extracellular solute-binding protein  86.54 
 
 
431 aa  771    Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0224  extracellular solute-binding protein  59.11 
 
 
431 aa  515  1.0000000000000001e-145  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0656  extracellular solute-binding protein family 1  59.1 
 
 
431 aa  498  1e-139  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.31335 
 
 
-
 
NC_008043  TM1040_3216  extracellular solute-binding protein  53.23 
 
 
425 aa  452  1.0000000000000001e-126  Ruegeria sp. TM1040  Bacteria  normal  normal  0.949389 
 
 
-
 
NC_012669  Bcav_2846  extracellular solute-binding protein family 1  45.41 
 
 
435 aa  337  1.9999999999999998e-91  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.687638 
 
 
-
 
NC_010511  M446_6664  extracellular solute-binding protein  38 
 
 
452 aa  277  3e-73  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0689323 
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  36 
 
 
441 aa  270  4e-71  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3270  extracellular solute-binding protein family 1  33.03 
 
 
435 aa  205  1e-51  Dickeya dadantii Ech703  Bacteria  normal  0.543416  n/a   
 
 
-
 
NC_012912  Dd1591_3386  extracellular solute-binding protein family 1  31.64 
 
 
440 aa  202  8e-51  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0631  extracellular solute-binding protein family 1  34.17 
 
 
435 aa  198  1.0000000000000001e-49  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0845  extracellular solute-binding protein family 1  33.42 
 
 
435 aa  194  4e-48  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  32.12 
 
 
445 aa  184  3e-45  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1696  extracellular solute-binding protein  29.74 
 
 
436 aa  182  1e-44  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00506774  n/a   
 
 
-
 
NC_010465  YPK_3962  glycerol-3-phosphate transporter periplasmic binding protein  28.31 
 
 
439 aa  172  1e-41  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0256  glycerol-3-phosphate transporter periplasmic binding protein  28.31 
 
 
439 aa  172  1e-41  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3655  glycerol-3-phosphate transporter periplasmic binding protein  28.09 
 
 
439 aa  170  5e-41  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  30.45 
 
 
458 aa  169  1e-40  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  31.28 
 
 
458 aa  168  2e-40  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  31.28 
 
 
458 aa  168  2e-40  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  31.28 
 
 
458 aa  167  2.9999999999999998e-40  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  30.2 
 
 
458 aa  167  2.9999999999999998e-40  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  31.03 
 
 
458 aa  167  5e-40  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  31.03 
 
 
458 aa  166  5e-40  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  31.03 
 
 
458 aa  166  5.9999999999999996e-40  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  31.03 
 
 
458 aa  166  8e-40  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  31.03 
 
 
458 aa  166  8e-40  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0125  glycerol-3-phosphate transporter periplasmic binding protein  28.25 
 
 
444 aa  162  1e-38  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0753  extracellular solute-binding protein  28.09 
 
 
437 aa  161  2e-38  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0117  glycerol-3-phosphate transporter periplasmic binding protein  27.52 
 
 
444 aa  161  3e-38  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3856  glycerol-3-phosphate transporter periplasmic binding protein  26.8 
 
 
440 aa  157  3e-37  Enterobacter sp. 638  Bacteria  normal  normal  0.64819 
 
 
-
 
NC_007347  Reut_A2052  extracellular solute-binding protein  27.17 
 
 
438 aa  157  4e-37  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0234  glycerol-3-phosphate transporter periplasmic binding protein  27.33 
 
 
439 aa  156  8e-37  Serratia proteamaculans 568  Bacteria  normal  normal  0.500336 
 
 
-
 
NC_013411  GYMC61_2845  extracellular solute-binding protein family 1  29.35 
 
 
439 aa  156  8e-37  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011080  SNSL254_A3826  glycerol-3-phosphate transporter periplasmic binding protein  27.15 
 
 
438 aa  154  4e-36  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_3732  glycerol-3-phosphate transporter periplasmic binding protein  26.65 
 
 
438 aa  154  4e-36  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3759  glycerol-3-phosphate transporter periplasmic binding protein  27.15 
 
 
438 aa  154  4e-36  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C3869  glycerol-3-phosphate transporter periplasmic binding protein  27.15 
 
 
438 aa  154  4e-36  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03302  glycerol-3-phosphate transporter subunit  26.7 
 
 
438 aa  153  5e-36  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0262  extracellular solute-binding protein family 1  26.7 
 
 
438 aa  153  5e-36  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A3928  glycerol-3-phosphate transporter periplasmic binding protein  27.15 
 
 
438 aa  153  5e-36  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03255  hypothetical protein  26.7 
 
 
438 aa  153  5e-36  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0263  glycerol-3-phosphate transporter periplasmic binding protein  26.7 
 
 
438 aa  153  5e-36  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_4767  glycerol-3-phosphate transporter periplasmic binding protein  26.7 
 
 
438 aa  153  5e-36  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.552805 
 
 
-
 
NC_009800  EcHS_A3650  glycerol-3-phosphate transporter periplasmic binding protein  26.7 
 
 
438 aa  153  5e-36  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0322  extracellular solute-binding protein family 1  27.6 
 
 
435 aa  152  8e-36  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E3870  glycerol-3-phosphate transporter periplasmic binding protein  26.7 
 
 
438 aa  152  8e-36  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0289  extracellular solute-binding protein  25.71 
 
 
437 aa  152  8.999999999999999e-36  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000019091  n/a   
 
 
-
 
NC_009801  EcE24377A_3931  glycerol-3-phosphate transporter periplasmic binding protein  26.46 
 
 
438 aa  152  1e-35  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A3748  glycerol-3-phosphate transporter periplasmic binding protein  26.92 
 
 
438 aa  151  3e-35  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3861  glycerol-3-phosphate transporter periplasmic binding protein  28 
 
 
439 aa  150  3e-35  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2709  glycerol-3-phosphate transporter periplasmic binding protein  26.49 
 
 
441 aa  149  1.0000000000000001e-34  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_3697  glycerol-3-phosphate transporter periplasmic binding protein  26.33 
 
 
441 aa  149  1.0000000000000001e-34  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0955  extracellular solute-binding protein family 1  26.17 
 
 
437 aa  149  1.0000000000000001e-34  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.152307 
 
 
-
 
NC_010681  Bphyt_3509  glycerol-3-phosphate transporter periplasmic binding protein  27.23 
 
 
441 aa  147  3e-34  Burkholderia phytofirmans PsJN  Bacteria  normal  0.839022  normal  0.0272066 
 
 
-
 
NC_006348  BMA2744  glycerol-3-phosphate transporter periplasmic binding protein  26.29 
 
 
441 aa  147  3e-34  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3726  glycerol-3-phosphate transporter periplasmic binding protein  26.29 
 
 
441 aa  147  3e-34  Burkholderia pseudomallei 1710b  Bacteria  normal  0.268589  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3209  glycerol-3-phosphate transporter periplasmic binding protein  26.29 
 
 
441 aa  147  3e-34  Burkholderia mallei SAVP1  Bacteria  normal  0.0248662  n/a   
 
 
-
 
NC_008836  BMA10229_A1760  glycerol-3-phosphate transporter periplasmic binding protein  26.29 
 
 
441 aa  147  3e-34  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2794  glycerol-3-phosphate transporter periplasmic binding protein  26.29 
 
 
441 aa  147  3e-34  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0448  glycerol-3-phosphate transporter periplasmic binding protein  26.79 
 
 
441 aa  147  4.0000000000000006e-34  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_3755  glycerol-3-phosphate transporter periplasmic binding protein  26.29 
 
 
441 aa  147  4.0000000000000006e-34  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3021  glycerol-3-phosphate transporter periplasmic binding protein  26.81 
 
 
441 aa  147  5e-34  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0374  glycerol-3-phosphate transporter periplasmic binding protein  26.46 
 
 
444 aa  145  1e-33  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2712  glycerol-3-phosphate transporter periplasmic binding protein  26.46 
 
 
443 aa  145  1e-33  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290307  n/a   
 
 
-
 
NC_008542  Bcen2424_0395  glycerol-3-phosphate transporter periplasmic binding protein  26.46 
 
 
443 aa  145  1e-33  Burkholderia cenocepacia HI2424  Bacteria  normal  0.954301  n/a   
 
 
-
 
NC_010003  Pmob_0721  extracellular solute-binding protein  25 
 
 
437 aa  145  1e-33  Petrotoga mobilis SJ95  Bacteria  normal  0.540981  n/a   
 
 
-
 
NC_012912  Dd1591_4045  glycerol-3-phosphate transporter periplasmic binding protein  27.05 
 
 
439 aa  145  2e-33  Dickeya zeae Ech1591  Bacteria  normal  0.661181  n/a   
 
 
-
 
NC_014212  Mesil_0476  extracellular solute-binding protein family 1  26.86 
 
 
401 aa  143  5e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3276  extracellular solute-binding protein family 1  26.33 
 
 
420 aa  143  7e-33  Cyanothece sp. PCC 7425  Bacteria  normal  0.147153  normal  0.336546 
 
 
-
 
NC_014212  Mesil_0475  extracellular solute-binding protein family 1  27.53 
 
 
397 aa  142  1.9999999999999998e-32  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0097  extracellular solute-binding protein  24.1 
 
 
434 aa  141  3e-32  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0791  extracellular solute-binding protein family 1  28.5 
 
 
399 aa  141  3e-32  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.418273 
 
 
-
 
NC_010551  BamMC406_0323  glycerol-3-phosphate transporter periplasmic binding protein  25.76 
 
 
444 aa  140  3.9999999999999997e-32  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.839712 
 
 
-
 
NC_010084  Bmul_0298  glycerol-3-phosphate transporter periplasmic binding protein  25.3 
 
 
444 aa  140  4.999999999999999e-32  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2173  extracellular solute-binding protein family 1  26.29 
 
 
445 aa  139  7e-32  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.00822083  n/a   
 
 
-
 
NC_007510  Bcep18194_A3492  glycerol-3-phosphate transporter periplasmic binding protein  25.53 
 
 
444 aa  139  1e-31  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008010  Dgeo_2662  extracellular solute-binding protein  26.97 
 
 
433 aa  139  1e-31  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.377519  n/a   
 
 
-
 
NC_013526  Tter_2294  extracellular solute-binding protein family 1  29.77 
 
 
448 aa  138  2e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2055  extracellular solute-binding protein  25.79 
 
 
436 aa  138  2e-31  Cupriavidus metallidurans CH34  Bacteria  normal  0.822621  normal 
 
 
-
 
NC_008390  Bamb_0314  glycerol-3-phosphate transporter periplasmic binding protein  25.3 
 
 
444 aa  138  2e-31  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2730  extracellular solute-binding protein family 1  26.65 
 
 
399 aa  138  2e-31  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0714  ABC transporter substrate-binding protein  24.54 
 
 
429 aa  138  2e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc1264  glycerol-3-phosphate-binding periplasmic lipoprotein signal peptide  25.9 
 
 
438 aa  137  4e-31  Ralstonia solanacearum GMI1000  Bacteria  normal  0.400828  normal  0.517414 
 
 
-
 
NC_010682  Rpic_1092  extracellular solute-binding protein family 1  26.16 
 
 
438 aa  137  5e-31  Ralstonia pickettii 12J  Bacteria  normal  0.0503452  normal 
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  27.95 
 
 
414 aa  135  1.9999999999999998e-30  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_3686  extracellular solute-binding protein  25.34 
 
 
460 aa  135  1.9999999999999998e-30  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1185  extracellular solute-binding protein family 1  25.92 
 
 
438 aa  135  1.9999999999999998e-30  Ralstonia pickettii 12D  Bacteria  normal  0.276437  normal 
 
 
-
 
NC_012917  PC1_1881  extracellular solute-binding protein family 1  26.18 
 
 
445 aa  135  1.9999999999999998e-30  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.000340671  n/a   
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  26.35 
 
 
441 aa  135  1.9999999999999998e-30  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4289  extracellular solute-binding protein  27.08 
 
 
466 aa  131  2.0000000000000002e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5274  extracellular solute-binding protein family 1  24.38 
 
 
442 aa  130  4.0000000000000003e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4449  extracellular solute-binding protein  25.5 
 
 
446 aa  129  7.000000000000001e-29  Xanthobacter autotrophicus Py2  Bacteria  decreased coverage  0.00843107  normal  0.115126 
 
 
-
 
NC_004311  BRA0655  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  26.36 
 
 
433 aa  129  1.0000000000000001e-28  Brucella suis 1330  Bacteria  normal  0.454035  n/a   
 
 
-
 
NC_009668  Oant_3750  extracellular solute-binding protein  25.45 
 
 
433 aa  129  1.0000000000000001e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.316129  n/a   
 
 
-
 
NC_007644  Moth_1484  extracellular solute-binding protein  27.01 
 
 
444 aa  128  2.0000000000000002e-28  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.00000000000980441  normal 
 
 
-
 
NC_007963  Csal_2738  extracellular solute-binding protein  24.84 
 
 
438 aa  127  3e-28  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.345118  n/a   
 
 
-
 
NC_011831  Cagg_2195  extracellular solute-binding protein family 1  28.14 
 
 
450 aa  127  4.0000000000000003e-28  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4664  extracellular solute-binding protein  22.52 
 
 
448 aa  125  2e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.593429 
 
 
-
 
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