More than 300 homologs were found in PanDaTox collection
for query gene Nham_3686 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_5274  extracellular solute-binding protein family 1  76.55 
 
 
442 aa  709    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4664  extracellular solute-binding protein  80.43 
 
 
448 aa  723    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.593429 
 
 
-
 
NC_007925  RPC_0097  extracellular solute-binding protein  79.24 
 
 
434 aa  713    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4373  extracellular solute-binding protein  80.87 
 
 
437 aa  713    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.104197  normal 
 
 
-
 
NC_007964  Nham_3686  extracellular solute-binding protein  100 
 
 
460 aa  947    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0714  ABC transporter substrate-binding protein  80.1 
 
 
429 aa  718    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4449  extracellular solute-binding protein  63.92 
 
 
446 aa  565  1e-160  Xanthobacter autotrophicus Py2  Bacteria  decreased coverage  0.00843107  normal  0.115126 
 
 
-
 
NC_012848  Rleg_5204  extracellular solute-binding protein family 1  55.29 
 
 
440 aa  503  1e-141  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306263 
 
 
-
 
NC_007973  Rmet_2055  extracellular solute-binding protein  54.05 
 
 
436 aa  495  1e-139  Cupriavidus metallidurans CH34  Bacteria  normal  0.822621  normal 
 
 
-
 
NC_009654  Mmwyl1_0604  extracellular solute-binding protein  54.16 
 
 
433 aa  491  9.999999999999999e-139  Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  0.00010036 
 
 
-
 
NC_003295  RSc1264  glycerol-3-phosphate-binding periplasmic lipoprotein signal peptide  54.46 
 
 
438 aa  484  1e-135  Ralstonia solanacearum GMI1000  Bacteria  normal  0.400828  normal  0.517414 
 
 
-
 
NC_007347  Reut_A2052  extracellular solute-binding protein  53.98 
 
 
438 aa  482  1e-135  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1265  extracellular solute-binding protein family 1  52.94 
 
 
446 aa  483  1e-135  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1185  extracellular solute-binding protein family 1  54.46 
 
 
438 aa  483  1e-135  Ralstonia pickettii 12D  Bacteria  normal  0.276437  normal 
 
 
-
 
NC_010682  Rpic_1092  extracellular solute-binding protein family 1  54.46 
 
 
438 aa  483  1e-135  Ralstonia pickettii 12J  Bacteria  normal  0.0503452  normal 
 
 
-
 
NC_009485  BBta_0111  putative glycerol 3-phosphate transport protein, ugpB-like protein  54.31 
 
 
438 aa  478  1e-133  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.877787 
 
 
-
 
NC_009784  VIBHAR_06396  ABC-type sugar transport system periplasmic protein  53.81 
 
 
435 aa  466  9.999999999999999e-131  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010511  M446_1646  extracellular solute-binding protein  52.9 
 
 
440 aa  467  9.999999999999999e-131  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.143266 
 
 
-
 
NC_008709  Ping_2093  glycerol-3-phosphate ABC transporter extracellular solute-binding family 1 protein  50.91 
 
 
435 aa  465  9.999999999999999e-131  Psychromonas ingrahamii 37  Bacteria  normal  0.107678  normal  0.487826 
 
 
-
 
NC_008044  TM1040_0849  extracellular solute-binding protein  53.04 
 
 
434 aa  462  1e-129  Ruegeria sp. TM1040  Bacteria  normal  0.0177782  normal 
 
 
-
 
NC_007778  RPB_0646  extracellular solute-binding protein  52.14 
 
 
441 aa  460  9.999999999999999e-129  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.206924 
 
 
-
 
NC_010465  YPK_3962  glycerol-3-phosphate transporter periplasmic binding protein  50.94 
 
 
439 aa  459  9.999999999999999e-129  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0298  glycerol-3-phosphate transporter periplasmic binding protein  50.11 
 
 
444 aa  458  9.999999999999999e-129  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_0256  glycerol-3-phosphate transporter periplasmic binding protein  50.94 
 
 
439 aa  459  9.999999999999999e-129  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3856  glycerol-3-phosphate transporter periplasmic binding protein  51.07 
 
 
440 aa  461  9.999999999999999e-129  Enterobacter sp. 638  Bacteria  normal  normal  0.64819 
 
 
-
 
NC_012791  Vapar_4134  extracellular solute-binding protein family 1  51.68 
 
 
437 aa  459  9.999999999999999e-129  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0117  glycerol-3-phosphate transporter periplasmic binding protein  49.77 
 
 
444 aa  457  1e-127  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0374  glycerol-3-phosphate transporter periplasmic binding protein  49.66 
 
 
444 aa  457  1e-127  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A3928  glycerol-3-phosphate transporter periplasmic binding protein  50.71 
 
 
438 aa  457  1e-127  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2712  glycerol-3-phosphate transporter periplasmic binding protein  49.66 
 
 
443 aa  457  1e-127  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290307  n/a   
 
 
-
 
NC_008390  Bamb_0314  glycerol-3-phosphate transporter periplasmic binding protein  49.89 
 
 
444 aa  457  1e-127  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0395  glycerol-3-phosphate transporter periplasmic binding protein  49.66 
 
 
443 aa  457  1e-127  Burkholderia cenocepacia HI2424  Bacteria  normal  0.954301  n/a   
 
 
-
 
NC_010159  YpAngola_A3655  glycerol-3-phosphate transporter periplasmic binding protein  50.71 
 
 
439 aa  457  1e-127  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0862  extracellular solute-binding protein  52.16 
 
 
437 aa  455  1e-127  Acidovorax sp. JS42  Bacteria  normal  normal  0.597127 
 
 
-
 
NC_011080  SNSL254_A3826  glycerol-3-phosphate transporter periplasmic binding protein  50.71 
 
 
438 aa  457  1e-127  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0323  glycerol-3-phosphate transporter periplasmic binding protein  49.89 
 
 
444 aa  458  1e-127  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.839712 
 
 
-
 
NC_011083  SeHA_C3869  glycerol-3-phosphate transporter periplasmic binding protein  50.71 
 
 
438 aa  457  1e-127  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3759  glycerol-3-phosphate transporter periplasmic binding protein  50.71 
 
 
438 aa  457  1e-127  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03302  glycerol-3-phosphate transporter subunit  50 
 
 
438 aa  454  1.0000000000000001e-126  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0262  extracellular solute-binding protein family 1  50 
 
 
438 aa  454  1.0000000000000001e-126  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03255  hypothetical protein  50 
 
 
438 aa  454  1.0000000000000001e-126  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3492  glycerol-3-phosphate transporter periplasmic binding protein  49.2 
 
 
444 aa  453  1.0000000000000001e-126  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0125  glycerol-3-phosphate transporter periplasmic binding protein  49.55 
 
 
444 aa  454  1.0000000000000001e-126  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2738  extracellular solute-binding protein  52.52 
 
 
438 aa  453  1.0000000000000001e-126  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.345118  n/a   
 
 
-
 
NC_011992  Dtpsy_0791  extracellular solute-binding protein family 1  51.92 
 
 
437 aa  454  1.0000000000000001e-126  Acidovorax ebreus TPSY  Bacteria  normal  0.721808  n/a   
 
 
-
 
NC_010658  SbBS512_E3870  glycerol-3-phosphate transporter periplasmic binding protein  50 
 
 
438 aa  452  1.0000000000000001e-126  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A3748  glycerol-3-phosphate transporter periplasmic binding protein  50.48 
 
 
438 aa  454  1.0000000000000001e-126  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_4767  glycerol-3-phosphate transporter periplasmic binding protein  50 
 
 
438 aa  454  1.0000000000000001e-126  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.552805 
 
 
-
 
NC_010468  EcolC_0263  glycerol-3-phosphate transporter periplasmic binding protein  50 
 
 
438 aa  454  1.0000000000000001e-126  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5465  extracellular solute-binding protein  51.57 
 
 
434 aa  453  1.0000000000000001e-126  Delftia acidovorans SPH-1  Bacteria  normal  0.355429  normal 
 
 
-
 
NC_009801  EcE24377A_3931  glycerol-3-phosphate transporter periplasmic binding protein  49.76 
 
 
438 aa  453  1.0000000000000001e-126  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3650  glycerol-3-phosphate transporter periplasmic binding protein  50 
 
 
438 aa  454  1.0000000000000001e-126  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3732  glycerol-3-phosphate transporter periplasmic binding protein  49.88 
 
 
438 aa  453  1.0000000000000001e-126  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_4045  glycerol-3-phosphate transporter periplasmic binding protein  50.48 
 
 
439 aa  449  1e-125  Dickeya zeae Ech1591  Bacteria  normal  0.661181  n/a   
 
 
-
 
NC_007908  Rfer_1287  extracellular solute-binding protein  51.33 
 
 
435 aa  450  1e-125  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0857  extracellular solute-binding protein  51.68 
 
 
437 aa  451  1e-125  Polaromonas sp. JS666  Bacteria  normal  normal  0.221606 
 
 
-
 
NC_011004  Rpal_0060  extracellular solute-binding protein family 1  51.93 
 
 
442 aa  450  1e-125  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.700837  n/a   
 
 
-
 
NC_008752  Aave_3650  extracellular solute-binding protein  51.08 
 
 
436 aa  449  1e-125  Acidovorax citrulli AAC00-1  Bacteria  normal  0.144474  normal 
 
 
-
 
NC_007951  Bxe_A0448  glycerol-3-phosphate transporter periplasmic binding protein  50.59 
 
 
441 aa  447  1.0000000000000001e-124  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0186  extracellular solute-binding protein  51.32 
 
 
441 aa  446  1.0000000000000001e-124  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3509  glycerol-3-phosphate transporter periplasmic binding protein  50.24 
 
 
441 aa  445  1.0000000000000001e-124  Burkholderia phytofirmans PsJN  Bacteria  normal  0.839022  normal  0.0272066 
 
 
-
 
NC_012880  Dd703_3861  glycerol-3-phosphate transporter periplasmic binding protein  50 
 
 
439 aa  446  1.0000000000000001e-124  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008783  BARBAKC583_0349  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  48.34 
 
 
441 aa  447  1.0000000000000001e-124  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3697  glycerol-3-phosphate transporter periplasmic binding protein  50.96 
 
 
441 aa  446  1.0000000000000001e-124  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2709  glycerol-3-phosphate transporter periplasmic binding protein  50.84 
 
 
441 aa  446  1.0000000000000001e-124  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_0234  glycerol-3-phosphate transporter periplasmic binding protein  50.36 
 
 
439 aa  447  1.0000000000000001e-124  Serratia proteamaculans 568  Bacteria  normal  normal  0.500336 
 
 
-
 
NC_006348  BMA2744  glycerol-3-phosphate transporter periplasmic binding protein  50.96 
 
 
441 aa  444  1e-123  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3726  glycerol-3-phosphate transporter periplasmic binding protein  50.96 
 
 
441 aa  444  1e-123  Burkholderia pseudomallei 1710b  Bacteria  normal  0.268589  n/a   
 
 
-
 
NC_007651  BTH_I3021  glycerol-3-phosphate transporter periplasmic binding protein  50.96 
 
 
441 aa  445  1e-123  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0404  extracellular solute-binding protein  50.48 
 
 
438 aa  442  1e-123  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A3209  glycerol-3-phosphate transporter periplasmic binding protein  50.96 
 
 
441 aa  444  1e-123  Burkholderia mallei SAVP1  Bacteria  normal  0.0248662  n/a   
 
 
-
 
NC_008836  BMA10229_A1760  glycerol-3-phosphate transporter periplasmic binding protein  50.96 
 
 
441 aa  444  1e-123  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3755  glycerol-3-phosphate transporter periplasmic binding protein  50.96 
 
 
441 aa  442  1e-123  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2794  glycerol-3-phosphate transporter periplasmic binding protein  50.96 
 
 
441 aa  444  1e-123  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2014  sn-glycerol-3-phosphate-binding periplasmic protein ugpB precursor  51.44 
 
 
433 aa  441  9.999999999999999e-123  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.167012  hitchhiker  0.0071297 
 
 
-
 
NC_004311  BRA0655  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  46.35 
 
 
433 aa  399  9.999999999999999e-111  Brucella suis 1330  Bacteria  normal  0.454035  n/a   
 
 
-
 
NC_007494  RSP_3290  ABC glycerol-3-phosphate transporter, periplasmic binding protein, UgpB  46.84 
 
 
431 aa  401  9.999999999999999e-111  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_4022  extracellular solute-binding protein  46.84 
 
 
431 aa  401  9.999999999999999e-111  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_3710  extracellular solute-binding protein  48.04 
 
 
431 aa  400  9.999999999999999e-111  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00279907  normal 
 
 
-
 
NC_012917  PC1_1881  extracellular solute-binding protein family 1  46.23 
 
 
445 aa  396  1e-109  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.000340671  n/a   
 
 
-
 
NC_009668  Oant_3750  extracellular solute-binding protein  46.6 
 
 
433 aa  395  1e-109  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.316129  n/a   
 
 
-
 
NC_008687  Pden_4190  extracellular solute-binding protein  46.52 
 
 
431 aa  396  1e-109  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.224886 
 
 
-
 
NC_009429  Rsph17025_3285  hypothetical protein  46.57 
 
 
431 aa  395  1e-109  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.339711  normal 
 
 
-
 
NC_010505  Mrad2831_3282  extracellular solute-binding protein  44.31 
 
 
435 aa  395  1e-109  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2173  extracellular solute-binding protein family 1  45.75 
 
 
445 aa  394  1e-108  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.00822083  n/a   
 
 
-
 
NC_009504  BOV_A0617  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  46.12 
 
 
444 aa  394  1e-108  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5587  extracellular solute-binding protein  41.76 
 
 
456 aa  370  1e-101  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1155  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  39.72 
 
 
434 aa  344  2e-93  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2075  extracellular solute-binding protein  39.19 
 
 
433 aa  309  6.999999999999999e-83  Jannaschia sp. CCS1  Bacteria  normal  0.114781  normal  0.235936 
 
 
-
 
NC_012791  Vapar_4001  extracellular solute-binding protein family 1  38 
 
 
442 aa  306  4.0000000000000004e-82  Variovorax paradoxus S110  Bacteria  normal  0.131149  n/a   
 
 
-
 
NC_011988  Avi_5507  ABC transporter substrate binding protein (glycerol 3-phosphate)  38.86 
 
 
447 aa  298  1e-79  Agrobacterium vitis S4  Bacteria  normal  0.0724145  n/a   
 
 
-
 
NC_009484  Acry_3003  extracellular solute-binding protein  37.23 
 
 
442 aa  297  3e-79  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_012852  Rleg_6261  extracellular solute-binding protein family 1  36.99 
 
 
428 aa  296  4e-79  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.689417 
 
 
-
 
NC_011989  Avi_0354  ABC transporter substrate binding protein (sn-glycerol 3-phosphate)  34.22 
 
 
432 aa  265  2e-69  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl2199  hypothetical protein  35.7 
 
 
437 aa  264  3e-69  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_012850  Rleg_3391  extracellular solute-binding protein family 1  37.68 
 
 
451 aa  263  4e-69  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.297931 
 
 
-
 
NC_006368  lpp2227  hypothetical protein  35.46 
 
 
437 aa  258  2e-67  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_011369  Rleg2_3119  extracellular solute-binding protein family 1  36.97 
 
 
451 aa  257  2e-67  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2351  extracellular solute-binding protein family 1  33.25 
 
 
435 aa  239  1e-61  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0456809  normal  0.0969201 
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  32.85 
 
 
445 aa  208  2e-52  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
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