Gene YPK_3962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3962 
Symbol 
ID6087947 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp4370998 
End bp4372317 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content47% 
IMG OID641599056 
Productglycerol-3-phosphate transporter periplasmic binding protein 
Protein accessionYP_001722678 
Protein GI170026173 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTAATA ATTCCATTCA TAAAGTGTCG ATCTGTATCG CGCTAACACT TACGTTTAGT 
GCCAATGCGA TGGCAGTGAC TGAAATTCCT TTTTGGCATT CGATGGAAGG AGAATTAGGT
AAAGAAGTCG ATTCAATTGC GGATCGTTTT AACCAGTCGC AGCCCGATTA TAAAATTGTT
CCTGTTTATA AAGGTAATTA CGAGCAGAGT TTGGCCGCAG GTATTGCGGC ATTCCGTTCA
GGTAAGGCAC CGGCTATTTT ACAAGTCTAT GAAGTCGGTA CTGCCACCAT GATGGCCAGT
AAGGCGATCA AACCGGTTTA CCAAGTCTTC AAAGATGCCA ATATTGATTT TGATGAGTCC
GTCTTCGTTC CAACAGTGGC AGGCTATTAC ACTGATTCTA AAACTGGGCG TTTATTGTCT
CAGCCGTTTA ACAGCTCGAC CCCCGTGCTG TATTACAACA AAGAGGCTTT CAAAAAAGCG
GGCTTGGACC CAGAACAACC GCCAAAAACA TGGCAAGAAC TGGCAGCAGA TACCGCTAAG
CTACGCGCTG CGGGTTCTAG TTGCGGTTAT GCCAGCGGTT GGCAAGGGTG GATTCAAATT
GAGAACTTCA GTGCCTGGCA TGGTCAGCCG ATAGCCAGCC GCAACAATGG TTTTGACGGC
ACTGATGCGG TATTGGAATT CAATAAACCC TTGCAGGTCA AACATATCCA ATTGCTGTCG
GATATGAATA AAAAAGGTGA TTTCACCTAT TTTGGCCGTA AAGATGAATC TACGTCCAAG
TTCTATAACG GTGATTGCGC TATTACCACC GCCTCTTCTG GCTCCCTCGC CAGTATCCGC
CATTATGCCA AGTTTAATTT CGGTGTTGGC ATGATGCCGT ATGACGCAGA TGCAAAAAAT
GCGCCGCAAA ACGCCATTAT TGGTGGTGCT AGCCTGTGGG TGATGGATGG CAAAGATAAA
GAGACTTACA AGGGTGTCGC AGAGTTCTTG CAATATTTGG TCAAACCAGA GATTGCCGCT
GAATGGCATC AGAAGACGGG TTATCTGCCC ATCACGACGG CGGCATATGA ACTAACGAAA
CAACAAGGTT TTTATGAGCA GAACCCAGGC GCTGATGTAG CGACCCGCCA GATGCTGAAT
AAACCGCCAT TGCCTTATAC CAAAGGCCTG CGTCTCGGCA ATATGCCGCA GATCCGTACC
GTGGTTGATG AAGAGCTGGA AGCTGTATGG ACCGGTAAGA AGACGCCTCA GGCGGCATTG
GATAACTCTG TGAAGCGGGG TGATGTGTTA CTGCGTCGTT TTGAACAAGC CAATAAATAA
 
Protein sequence
MFNNSIHKVS ICIALTLTFS ANAMAVTEIP FWHSMEGELG KEVDSIADRF NQSQPDYKIV 
PVYKGNYEQS LAAGIAAFRS GKAPAILQVY EVGTATMMAS KAIKPVYQVF KDANIDFDES
VFVPTVAGYY TDSKTGRLLS QPFNSSTPVL YYNKEAFKKA GLDPEQPPKT WQELAADTAK
LRAAGSSCGY ASGWQGWIQI ENFSAWHGQP IASRNNGFDG TDAVLEFNKP LQVKHIQLLS
DMNKKGDFTY FGRKDESTSK FYNGDCAITT ASSGSLASIR HYAKFNFGVG MMPYDADAKN
APQNAIIGGA SLWVMDGKDK ETYKGVAEFL QYLVKPEIAA EWHQKTGYLP ITTAAYELTK
QQGFYEQNPG ADVATRQMLN KPPLPYTKGL RLGNMPQIRT VVDEELEAVW TGKKTPQAAL
DNSVKRGDVL LRRFEQANK