Gene Bphyt_3509 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3509 
Symbol 
ID6282189 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp3954113 
End bp3955438 
Gene Length1326 bp 
Protein Length441 aa 
Translation table11 
GC content61% 
IMG OID642623088 
Productglycerol-3-phosphate transporter periplasmic binding protein 
Protein accessionYP_001897123 
Protein GI187925481 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.839022 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0272066 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTTCA AGCCGCTAAT CCGTTCGCTT TCCCTTGCCG CCGTATTGAG CGTCGGCCTC 
AGCCAGGCGG CTCACGCCGC GACTGAGATC CAGTTCTGGC ACGGCATGGA AGCCGCGCTG
GGCGAACGGC TGAACGACAT CGCCAACGCG TTCAACGCAT CGCAAAGCGA CTACAAGATC
GTGCCGGTCT TCAAAGGCAC CTACGATCAG ACGCTCGCCG CGGGCATCGC CGCGTATCGT
AGCGGCAATG CGCCGGCCAT CCTGCAGGTC TACGAAGTCG GCACCGCCAC GATGATGCAG
GCGAAGAAGG CGGTGATCCC CGTCTCGGAA GTGTTCAAGC AAGCCGGCGT GCCGCTCGAT
GAGAAGGCCT TCGTGCCGAC CATCGCCAGC TATTACAGCG ACGCCAAAAC CGGCGAGCTG
ATCTCGATGC CGTTCAACAG CTCGACGCCG GTGCTGTACT ACAACAAGGA CGCCTTCAAG
AAAGCCGGCC TCGACCCGAA CCAGCCGCCG AAAACCTGGG CCGAATTGCA GACCGACGCG
CAGAAGCTGA AGGCGTCGGG CATGGCCTGC GGCTATTCGT CGGGCTGGCA GAGCTGGATT
CAGCTCGAAA ACTACAGCGC GTGGCACGGC GCGCCGTTCG CGTCGAAGAA CAATGGCTTC
GACGGCCCGG ACGCGCAACT GGAATTCAAC AAGCCGCTGC AGGTCGCGCA TATCCAGTTC
CTGCAGAACA TGCAGAAGGA AGGCACGTTC ACCTACGTCG GCCGCAAGGA CGAACCGGTG
TCGAAGTTCT ATAGCGGCGA CTGCGGGATC ATCACCAACT CGTCGGGATC GCTCGCCACG
ATCAAGAAGT ACGCGAAGTT CAACTTCGGC ACCGGCATGA TGCCGTACGA CGCAAGCGTG
AAGGGCGCGC CGCAGAACGC GATCATCGGC GGAGCGAGCC TGTGGGTGCT GTCGGGCAAG
GATCCGGCCG TCTATAAGGG CGTGGCGAAA TTCCTTTCGT ACCTGTCGTC GGCGCCGGTT
GCCGCGAAGT GGCATCAGGA CACCGGCTAT CTGCCGGTCA CCACCGCCGC TTATCAACTT
ACCCAGCAGC AAGGCTTCTA CGACAAGAAT CCGGGCAGCG ACACTGCCAT CAAACAGATG
CTCAACAAGC CGCCGCTGCC GTACACCAAG GGCTTGCGTC TGGGCAACAT GCCGCAGATC
CGCACGGTCA TCGACGAAGA ACTCGAACAG GTATGGGCAC AGAAGAAGAC GCCGCAACAG
GCGCTCGACG CCTCGGTCTC GCGTGGCGAT GAACTGCTGC GCCGCTTCGA AAAAGCCGGC
AATTAA
 
Protein sequence
MSFKPLIRSL SLAAVLSVGL SQAAHAATEI QFWHGMEAAL GERLNDIANA FNASQSDYKI 
VPVFKGTYDQ TLAAGIAAYR SGNAPAILQV YEVGTATMMQ AKKAVIPVSE VFKQAGVPLD
EKAFVPTIAS YYSDAKTGEL ISMPFNSSTP VLYYNKDAFK KAGLDPNQPP KTWAELQTDA
QKLKASGMAC GYSSGWQSWI QLENYSAWHG APFASKNNGF DGPDAQLEFN KPLQVAHIQF
LQNMQKEGTF TYVGRKDEPV SKFYSGDCGI ITNSSGSLAT IKKYAKFNFG TGMMPYDASV
KGAPQNAIIG GASLWVLSGK DPAVYKGVAK FLSYLSSAPV AAKWHQDTGY LPVTTAAYQL
TQQQGFYDKN PGSDTAIKQM LNKPPLPYTK GLRLGNMPQI RTVIDEELEQ VWAQKKTPQQ
ALDASVSRGD ELLRRFEKAG N