Gene RSc1264 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1264 
SymbolugpB 
ID1220087 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1343321 
End bp1344637 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content66% 
IMG OID637237641 
Productglycerol-3-phosphate-binding periplasmic lipoprotein signal peptide 
Protein accessionNP_519385 
Protein GI17545983 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.400828 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.517414 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGATCC GGAAGATTGC GGGGGCAGTG GCCGTGCTGG CGGCCTGCAC GTTTGCGCAG 
GCCGCGCATG CCGTGACCGA GATTCAGTGG TGGCACTCGA TGGAGGGCGC CCTGAACGAC
AAGGTGAACG AGCTTGCCAA CAAGTTCAAC GCCAGCCAGC CCGACTACAA GGTCGTGCCC
GTCTACAAGG GCCAGTACGA CGAATCGCTG GCCGCCGGCA TCGCGGCCTT CCGCGCCGGC
AACGCGCCGG CCATCCTGCA GGTCTTCGAG GTCGGCACCG CGACCATGAT GAACGCCCGC
GGCGCCATCG TGCCGATCGC CAAGGTGATG AAGGACGCCG GCGAGAAGTT CGACCCCAAG
GCCTACGTGC CGGCGGTGGC GGGCTACTAC ACGTCGAACA AGGGAGACAT GCTGTCGTTC
CCGTTCAACA GCTCGACGAC GATCCTGTAC TACAACAAGG ACGCCTTCAA GAAGGCCGGC
CTCGACCCGA ACAAGCCGCC CGCGACGTGG CAGGAGGTCG CCATCGACGC GGCCAAGCTC
AAGGCGGCCG GCTTCGCGTG CGGCTACACC ACCGACTGGC AGTCGTGGGT GCACCTGGAG
AGCTTCTCGG CGTGGCACAA CGTGGCGTTC GCGACCGAGA ACAACGGCTT CGGCGGCGCG
AAGGCGCGCC TGATCTTCAA CGGTCCGGTG CAGGTGCAGC ACATCGAGCA TCTGCTCGAC
ATGGAGAAGA AGGGCTACTT CACCTATGCC GGCCGCAAGG ACGAGCCCAA GGCCAAGTTC
ATCGCGGGCG AGTGCGCCAT GCACACCGGC TCGTCGGCGG CGCTGGCCAA CATCCGCAAG
AACGCCAGGT TCAGCTTCAG CCCCGCGCCG CTGCCGTACG AGGCGGGCGT GCCGGGCGCG
CCGCAGAACA CCATCATCGG CGGCGCCTCG CTGTGGGTGA TGGGCGGCCA CAAGCCCGAA
GAGTACAAGG GTGTCGCCCG GTTCTTCTCC TTCCTGTCGC GCCCCGAGAT CCAGTCCGAC
TGGCACCAGT CGACCGGCTA CCTGCCGGTG ACGATGCAAG CGTACGAACT GACCCGGCAG
TCGGGCTTCT ATGACAAGAA CCCGGGCGCC GACGTGGCCG TCAAGCAGAT GATCGTCAGG
ACGACCGACA AGTCGCGCGG CATCCGCCTG GGCAACTTCC CGCAGATCCG CTCGGTGATC
GACGAAGAAC TCGAAGCCGT GTGGGCGGGC AAGAAGTCGC CGAAGGAAGC GCTGGACAGC
GCGGTCGCGC GCGGCAACGA TCTGCTGGCC CGCTTCGAGA AGACCGTCAA GGAGTAA
 
Protein sequence
MMIRKIAGAV AVLAACTFAQ AAHAVTEIQW WHSMEGALND KVNELANKFN ASQPDYKVVP 
VYKGQYDESL AAGIAAFRAG NAPAILQVFE VGTATMMNAR GAIVPIAKVM KDAGEKFDPK
AYVPAVAGYY TSNKGDMLSF PFNSSTTILY YNKDAFKKAG LDPNKPPATW QEVAIDAAKL
KAAGFACGYT TDWQSWVHLE SFSAWHNVAF ATENNGFGGA KARLIFNGPV QVQHIEHLLD
MEKKGYFTYA GRKDEPKAKF IAGECAMHTG SSAALANIRK NARFSFSPAP LPYEAGVPGA
PQNTIIGGAS LWVMGGHKPE EYKGVARFFS FLSRPEIQSD WHQSTGYLPV TMQAYELTRQ
SGFYDKNPGA DVAVKQMIVR TTDKSRGIRL GNFPQIRSVI DEELEAVWAG KKSPKEALDS
AVARGNDLLA RFEKTVKE