Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1264 |
Symbol | ugpB |
ID | 1220087 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1343321 |
End bp | 1344637 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637237641 |
Product | glycerol-3-phosphate-binding periplasmic lipoprotein signal peptide |
Protein accession | NP_519385 |
Protein GI | 17545983 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.400828 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.517414 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGATCC GGAAGATTGC GGGGGCAGTG GCCGTGCTGG CGGCCTGCAC GTTTGCGCAG GCCGCGCATG CCGTGACCGA GATTCAGTGG TGGCACTCGA TGGAGGGCGC CCTGAACGAC AAGGTGAACG AGCTTGCCAA CAAGTTCAAC GCCAGCCAGC CCGACTACAA GGTCGTGCCC GTCTACAAGG GCCAGTACGA CGAATCGCTG GCCGCCGGCA TCGCGGCCTT CCGCGCCGGC AACGCGCCGG CCATCCTGCA GGTCTTCGAG GTCGGCACCG CGACCATGAT GAACGCCCGC GGCGCCATCG TGCCGATCGC CAAGGTGATG AAGGACGCCG GCGAGAAGTT CGACCCCAAG GCCTACGTGC CGGCGGTGGC GGGCTACTAC ACGTCGAACA AGGGAGACAT GCTGTCGTTC CCGTTCAACA GCTCGACGAC GATCCTGTAC TACAACAAGG ACGCCTTCAA GAAGGCCGGC CTCGACCCGA ACAAGCCGCC CGCGACGTGG CAGGAGGTCG CCATCGACGC GGCCAAGCTC AAGGCGGCCG GCTTCGCGTG CGGCTACACC ACCGACTGGC AGTCGTGGGT GCACCTGGAG AGCTTCTCGG CGTGGCACAA CGTGGCGTTC GCGACCGAGA ACAACGGCTT CGGCGGCGCG AAGGCGCGCC TGATCTTCAA CGGTCCGGTG CAGGTGCAGC ACATCGAGCA TCTGCTCGAC ATGGAGAAGA AGGGCTACTT CACCTATGCC GGCCGCAAGG ACGAGCCCAA GGCCAAGTTC ATCGCGGGCG AGTGCGCCAT GCACACCGGC TCGTCGGCGG CGCTGGCCAA CATCCGCAAG AACGCCAGGT TCAGCTTCAG CCCCGCGCCG CTGCCGTACG AGGCGGGCGT GCCGGGCGCG CCGCAGAACA CCATCATCGG CGGCGCCTCG CTGTGGGTGA TGGGCGGCCA CAAGCCCGAA GAGTACAAGG GTGTCGCCCG GTTCTTCTCC TTCCTGTCGC GCCCCGAGAT CCAGTCCGAC TGGCACCAGT CGACCGGCTA CCTGCCGGTG ACGATGCAAG CGTACGAACT GACCCGGCAG TCGGGCTTCT ATGACAAGAA CCCGGGCGCC GACGTGGCCG TCAAGCAGAT GATCGTCAGG ACGACCGACA AGTCGCGCGG CATCCGCCTG GGCAACTTCC CGCAGATCCG CTCGGTGATC GACGAAGAAC TCGAAGCCGT GTGGGCGGGC AAGAAGTCGC CGAAGGAAGC GCTGGACAGC GCGGTCGCGC GCGGCAACGA TCTGCTGGCC CGCTTCGAGA AGACCGTCAA GGAGTAA
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Protein sequence | MMIRKIAGAV AVLAACTFAQ AAHAVTEIQW WHSMEGALND KVNELANKFN ASQPDYKVVP VYKGQYDESL AAGIAAFRAG NAPAILQVFE VGTATMMNAR GAIVPIAKVM KDAGEKFDPK AYVPAVAGYY TSNKGDMLSF PFNSSTTILY YNKDAFKKAG LDPNKPPATW QEVAIDAAKL KAAGFACGYT TDWQSWVHLE SFSAWHNVAF ATENNGFGGA KARLIFNGPV QVQHIEHLLD MEKKGYFTYA GRKDEPKAKF IAGECAMHTG SSAALANIRK NARFSFSPAP LPYEAGVPGA PQNTIIGGAS LWVMGGHKPE EYKGVARFFS FLSRPEIQSD WHQSTGYLPV TMQAYELTRQ SGFYDKNPGA DVAVKQMIVR TTDKSRGIRL GNFPQIRSVI DEELEAVWAG KKSPKEALDS AVARGNDLLA RFEKTVKE
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